Lsi06G000560 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTTTCATCGCTATTTTATTATTATTATTATTATTATTATTATTATTTTTTTGGAGAAAATTAGAATTTAGTTCTTATAGTTTGATAAAACTTTCGTAAATAATCCTTATTGCGGGGTTTATTTATGAGGATTTTATCAAACTATATAGAGACTAAACTCTGACTTTTTCCAAACCATTAGAGGGAAGAAATTTGTAATTTAACCTATAAATTATTAAAATTCTATGAATCGGGTGATGTTTTAATATAGTATCAAAGTTAGAGGTTCAATATTTATACTATTCAAATGTAATCTTTTTTTTTTTTTTCTGGTAATTATGTAATAAGTAGCAATTTTAGGAATAATAACAAAGTGTATAGCAACATTTTAAAAAATTGCAAATATAGCAAAGTCTATCCGTGATAGAGTTTTATCGTTGATAGAGTTTTATGGTCTAGGTGGTCTATCACTGATAAACCATAAGAGTCTATCAGCGATAGAACTCTATCACGGATATACTTTGCTATATTTGCAATTTTTTTAAAATGTTGCTATATTTGCAATTGTCCCTTTTTTTTCTACGTAATTGGTAATCACTCGTCAGGTATTCTACAAGTTTTCAAGTAACCTACTAGTGTATTAAAAAAAAGGTTTTTTTTTTTTTTTTTTTTTTTTTGGGTAGGAAAAGTTGATGGAAACTCTCATGAAGTTGCCTGCAATTGGATTAAAGCTTCAAATTTCACCCTCTTTGGTAAAACAAATGCAAAGAAGCACACTATCCAAAAGGAAGAGGATAAATAACCATGCAGCAGAAGCAAGAACAGATCATGATGGTGAAAGGTTGAAGGCCTCTATTTTAGGTGCATTGATGCTTCAAATTGGGTCTTGGCAGGTAATTATAATAATTTTATCGAATCTTTGAAGCTTGTTCGATGATTCATGTTCGTAAAATTTCGAGACGGGTGACTTATAAATGTTAAGATTATTGTGCAACTATTGATAATATGGTGATTTTATGAGGTAACTTTGTAATGTTTGTTTTATGGTATACTTCTTCAGTTAGTGGCTAGAAATGAAGGTGACTTGGTGGCAAAATTCTATTTTGCAAAGAGGCAGCTTGTGTGGGAGATTTTGAGAAATGGGTTGAAAGAAAAAATTGAAATTGAATGGTCAAATATCATAGGAATCCAAGCTTTCTTGGAAGAAAACAAACCAGGAATCTTGGAAGTGGAGGTAATTAACTATTAGGATTATTTTTAAATATAGAAAAATGAGTCAAACTATTTACAAATATAGAAAAATATTACTGTCTATCAGCGATAAACCGCGATAGACTTCTACTGCTTGAGCGATAGACAGCGATAAAATTATATCGTGGTCTATCGTTGATAGACAGTAAAATTTTTCTATATTTATAAATAGTTTGATAATTTTTTTGTTTATAGTAATTTTCCTAACTATTACTTCTATTTTCATACTATAAGATTGACAGTCAATTACGATGTTATTTTGTTTATGAATTTAGTAAGACCAAGTGTTTCCATCTAAACACACAGTTTGTTTATAGTTTGTCCTCGTTTGTTCTTTTGAAATTTTGCAGTTACACCATCCGCCGAAATTTTACAAAGAGATCGAACCTGAGCCACGAAAACACACACAGTGGACCGACGGATCGGATTTTACGGAAGGCCAAGCTTATGTAAACAGGTTTATTCTTTTTGCAGTTTTTAGTTAGATTAATTATAATGATCAAAAGAAGTTTTGTAAAGTTAATGGAGAATTATTTTTTTGTTGTAAACTTTTAGGAGACATTGCATTGTGTTTCCTCCAAAAGTGTTGGACAAACACTATCAGAAACTAAAAGATAAGGATAAGCATTTGTTTGAGCTGAGCCAAAGGCCATTCCCAACTCTAAATTTCTCCTATTTCCCTTCAGAAATTGCTTTCAATCAAATTTCTTCTATTCAATTTGAGGAAATAATGTTCAAAATCCCTTCTTTTCCACCCCATCTTTCAGCTACTGCAATTCACAGCCTAACTTCACCAAAATCAGGTATGCATTTTCTCTATAATACTTAATAAAAAGGAAAATTTTTAAAAATAGAAAAATGAAGGAAACTATTTACACAAAATAGCAAAATTTGTAGATAGTTGTGATAGACACTGATAGAAATCTATCGGAGTCTATCAGTGATAGAAATGATAGAAGTCTATCAATGTCTATCCGTATTATTTTTTTTTTTTTTTTTTTTTTTTTTGCTATTTTCTATAAATATTTTAACATTTTTTCTATCTGTGAAAATTTTTCTAATAAAGAATAATATATTGTTAGTTGTTATCTCTATATATTAGAAATTTTTAGGATTTGTAACCTTTCCTTTTGAAACAATTTGGTTCTCGTTCTTTAGATGTATATTTCTTTGTAATTGCGAAATCACGTGAATCTTTAGATTATTGATGGAATTTTGATTTTAAACTTATTCTGTTCAACTAAGTACAATAGAGATAATATATTTATCTAGTTAAATTAAACATTTAATCTTATACTTTTAAGTATTATGACCAATCTATCTAGTCTCGAGAGACGAAAATTTCAATTATATTCATAAATTTTTTTACTGTTAACACTTGCTAACACAACAACTCTTTTGAAGATTTCACATAGCTGATATGAGCATAGTTCAAATGGTAAAAGACACACATATACTTTTTAACAAGAGGTCAGGGGGTCGAATCTAACTCTATGAAATGGAATAATATATTTACAACATGGCTAAGTAGATAAAAATAAATTATGATTTACATTTATTACAACTTTTGTAATTTTTCCTTACAAATTTGTCTTATAGTTGTTGATTACACGCCACATTTCAATGAGATCATAACCCATGAAGACCAAAGAATGGACGTGTTGAACAAAGGAAACACCATGAGAAGATATGAAGTTGAAGAATCATCAGCCAATTACTACAATGGGTATGATCCAATGGCTTCTTCTATGTTTTGGTTGGGACAAAATGGTGAAGCAGCAGCAACTAATTTGAGTGACCAACCAAACACAAATTATTATGATCATATTGAGTGTAGTTTCAATGGAACTGTTATGGACATGAGAGTCCCTCAAGTCCCAAGTGCCCACTTTTTTAAGTAATTCCACTTAACTAACCATCATGGGTTGGCTTAGTGGTAGTGGAAACATCCAAAAAAAGTCAAAGGACTAAGGGGTTGTGGGTTCAATCCATGGTGGAAACCTACCTAGAGCCCGCCTGTTGTAGGGTCGGGTGGGTTGTCCCGTGAGATTAGTCGAAGTGCGCGTAAGCTGGCAGCCCGTCAAAAAAAAAAAAAAAAAGTAATCCCACTTAACTCAAATAAATGTACTCTAAAACCTTCCAAATTAAATGAATGAATAATTGTCTATTACATTCTCGTAGTTTATTTCTATTAATTTGTATCATTACGGATCAACATCGTAAGTATTGTTGGAAGAGTTACAAATAACGGAGAAAATCGAAGTAAATAATGATAATGAGGTGTGAGTATCTCTCTCTTTTTCAGAAGATTCAAACTCTTTTGTAGTGTGTATATATAATGTTTTTCT ATGGGAAAAGTTGATGGAAACTCTCATGAAGTTGCCTGCAATTGGATTAAAGCTTCAAATTTCACCCTCTTTGCAGAAGCAAGAACAGATCATGATGGTGAAAGGTTGAAGGCCTCTATTTTAGGTGCATTGATGCTTCAAATTGGGTCTTGGCAGTTAGTGGCTAGAAATGAAGGTGACTTGGTGGCAAAATTCTATTTTGCAAAGAGGCAGCTTTTACACCATCCGCCGAAATTTTACAAAGAGATCGAACCTGAGCCACGAAAACACACACAGTGGACCGACGGATCGGATTTTACGGAAGGCCAAGCTTATGAGACATTGCATTGTGTTTCCTCCAAAATTGTTGATTACACGCCACATTTCAATGAGATCATAACCCATGAAGACCAAAGAATGGACGTGTTGAACAAAGGAAACACCATGAGAAGATATGAAGTTGAAGAATCATCAGCCAATTACTACAATGGGTATGATCCAATGGCTTCTTCTATGTTTTGGTTGGGACAAAATGGTGAAGCAGCAGCAACTAATTTGAGTGACCAACCAAACACAAATTATTATGATCATATTGAGTGTAGTTTCAATGGAACTGTTATGGACATGAGAGTCCCTCAAGTCCCAAGTGCCCACTTTTTTAAGTAATTCCACTTAACTAACCATCATGGGTTGGCTTAGTGGTAGTGGAAACATCCAAAAAAAGTCAAAGGACTAAGGGGTTGTGGGTTCAATCCATGGTGGAAACCTACCTAGAGCCCGCCTGTTGTAGGGTCGGGTGGGTTGTCCCGTGAGATTAGTCGAAGTGCGCGTAAGCTGGCAGCCCGTCAAAAAAAAAAAAAAAAAGTAATCCCACTTAACTCAAATAAATGTACTCTAAAACCTTCCAAATTAAATGAATGAATAATTGTCTATTACATTCTCGTAGTTTATTTCTATTAATTTGTATCATTACGGATCAACATCGTAAGTATTGTTGGAAGAGTTACAAATAACGGAGAAAATCGAAGTAAATAATGATAATGAGGTGTGAGTATCTCTCTCTTTTTCAGAAGATTCAAACTCTTTTGTAGTGTGTATATATAATGTTTTTCT ATGGGAAAAGTTGATGGAAACTCTCATGAAGTTGCCTGCAATTGGATTAAAGCTTCAAATTTCACCCTCTTTGCAGAAGCAAGAACAGATCATGATGGTGAAAGGTTGAAGGCCTCTATTTTAGGTGCATTGATGCTTCAAATTGGGTCTTGGCAGTTAGTGGCTAGAAATGAAGGTGACTTGGTGGCAAAATTCTATTTTGCAAAGAGGCAGCTTTTACACCATCCGCCGAAATTTTACAAAGAGATCGAACCTGAGCCACGAAAACACACACAGTGGACCGACGGATCGGATTTTACGGAAGGCCAAGCTTATGAGACATTGCATTGTGTTTCCTCCAAAATTGTTGATTACACGCCACATTTCAATGAGATCATAACCCATGAAGACCAAAGAATGGACGTGTTGAACAAAGGAAACACCATGAGAAGATATGAAGTTGAAGAATCATCAGCCAATTACTACAATGGGTATGATCCAATGGCTTCTTCTATGTTTTGGTTGGGACAAAATGGTGAAGCAGCAGCAACTAATTTGAGTGACCAACCAAACACAAATTATTATGATCATATTGAGTGTAGTTTCAATGGAACTGTTATGGACATGAGAGTCCCTCAAGTCCCAAGTGCCCACTTTTTTAAGTAA MGKVDGNSHEVACNWIKASNFTLFAEARTDHDGERLKASILGALMLQIGSWQLVARNEGDLVAKFYFAKRQLLHHPPKFYKEIEPEPRKHTQWTDGSDFTEGQAYETLHCVSSKIVDYTPHFNEIITHEDQRMDVLNKGNTMRRYEVEESSANYYNGYDPMASSMFWLGQNGEAAATNLSDQPNTNYYDHIECSFNGTVMDMRVPQVPSAHFFK
BLAST of Lsi06G000560 vs. TrEMBL
Match: A0A0A0M1F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561420 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 1.0e-30 Identity = 78/117 (66.67%), Postives = 92/117 (78.63%), Query Frame = 1
BLAST of Lsi06G000560 vs. TrEMBL
Match: A0A0D2UJX9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G001000 PE=4 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 8.9e-11 Identity = 51/130 (39.23%), Postives = 65/130 (50.00%), Query Frame = 1
BLAST of Lsi06G000560 vs. TrEMBL
Match: A0A067JHP3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23215 PE=4 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 6.4e-09 Identity = 45/139 (32.37%), Postives = 67/139 (48.20%), Query Frame = 1
BLAST of Lsi06G000560 vs. TrEMBL
Match: A0A067ENA4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012603mg PE=4 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.0e-06 Identity = 38/108 (35.19%), Postives = 49/108 (45.37%), Query Frame = 1
BLAST of Lsi06G000560 vs. TAIR10
Match: AT4G30780.1 (AT4G30780.1 unknown protein) HSP 1 Score: 48.5 bits (114), Expect = 5.9e-06 Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1
BLAST of Lsi06G000560 vs. TAIR10
Match: AT2G24100.1 (AT2G24100.1 unknown protein) HSP 1 Score: 48.5 bits (114), Expect = 5.9e-06 Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1
BLAST of Lsi06G000560 vs. NCBI nr
Match: gi|659099332|ref|XP_008450546.1| (PREDICTED: uncharacterized protein LOC103492114 isoform X1 [Cucumis melo]) HSP 1 Score: 142.9 bits (359), Expect = 6.5e-31 Identity = 78/119 (65.55%), Postives = 91/119 (76.47%), Query Frame = 1
BLAST of Lsi06G000560 vs. NCBI nr
Match: gi|659099334|ref|XP_008450547.1| (PREDICTED: uncharacterized protein LOC103492114 isoform X2 [Cucumis melo]) HSP 1 Score: 142.9 bits (359), Expect = 6.5e-31 Identity = 78/119 (65.55%), Postives = 91/119 (76.47%), Query Frame = 1
BLAST of Lsi06G000560 vs. NCBI nr
Match: gi|700210915|gb|KGN66011.1| (hypothetical protein Csa_1G561420 [Cucumis sativus]) HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30 Identity = 78/117 (66.67%), Postives = 92/117 (78.63%), Query Frame = 1
BLAST of Lsi06G000560 vs. NCBI nr
Match: gi|778662235|ref|XP_011659575.1| (PREDICTED: uncharacterized protein LOC105436206 [Cucumis sativus]) HSP 1 Score: 90.1 bits (222), Expect = 5.0e-15 Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 1
BLAST of Lsi06G000560 vs. NCBI nr
Match: gi|823247258|ref|XP_012456304.1| (PREDICTED: uncharacterized protein LOC105777522 isoform X2 [Gossypium raimondii]) HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10 Identity = 51/130 (39.23%), Postives = 65/130 (50.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |