Lsi08G015650 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.CGGAGATCATGGTTTATATCTAAAAGGATCTTCTAGCTCAATCCTAACAGGCCCCACGGCTTCGCACTTTTGCCCCTTCTCTTCTTGACTCTATGATTTCAGAGAAATCCATGAATTAAGCCTTACCCCTTCTTCTTCTTTCTCTTTCTTCCCGATTCCGTTGTCCCGTTATCGATTTCTCCTCTTTCATCGTTGCTTCTCACTCTCTTCATCTTCTTCTTCTGTTTAACGATTCATATCCTTTTGCTTTCTTGTCCATCCATTTTGGTCTCAAGTTTGAGCTCAATTCGATCGGATTTGAATTCCGGGTAAGTTGTTGGTTCTTGATACATACAAGAAAGAGAGTTCAATTCTGTCCGTTGGTTTATTTGTATTTTGTAGTATGAAAACTTGGTTGTAGGAAATCTTCTAGACTTTGAGCTCTTAATTAGGGGCTTGCAATTTCCGAGCTGATTTCAGGTGGATAGCTTCTGGGTTTGAATGAAGTTAGACTATTTTATAGATTTTATCGACTTATAAGCTTAATTTCTAGCTCCTCGAAGTATGTTTTTGGTATTGGAGGTCGAAATGACTGGGAAACCATGTCTCTGTAAGTGTTCTTTGGGTTGAATTTGGGAGAAGAAACGATGAAGAGAGGAAAGGATGACGAGAAGACGATGGAACCTATGTTCCCTAGGCTCCATGTTAATGACACCGAGAAAGGTTGGCCAAGAGCGCCTCCAAGGAATAAGATGGCCCTCTATGAACAGTTCACTGTACCATCCAAACGTTCGAGTCCCGGGGCTCTCCCTCTTAAGGCAGATATCTCCAGCAAATCAGTTACCACACCATCCTCAAGCCAGGTAGACAGTAGTCTGTGTTTTATATGTTTGAAAATTGCATCTGAGCTTTTTATCTGATGTGGGATTTGGGGAAGTTCACAGTATATTCTTGAATTCATCGGTCCAATATGGTTAACAGACCTAACGATATCAATTTCAATAGTCTGGTATTTTACTTTTAACTGTGATCATTTGGTTCATGTTTGTTTATTGCTTTGCTGGAGCATGGAATATACCGGTTATTTTGTGAGTTTATCGTTGGCTAATCATTATCCCCTTACTCCTAATTTATTTAATTCACGGCTAACAATCATGAATCAGACTAATCATTGCAAACTCGAGTTCAATGGTTTTATTTTTTCCCATGACAGACAGACACTACTTACATTAGTGAAAATATGTGTTCACATATAAGGAGCTACTAGATTCATGAGAGTTTGGTTGTTCGGAAAATGGTGCTCTTAACACCCCAACTGAAAATCTTTTCAGGGTACAGGAACCGACGGAAATCTGCGCCTGCCGTTAAACCTGCCTTCACCAACTTCTACTAATCAGGTTGAAAATTCTCAAGCTCTCCCATCTGGTGAAGTAAATGAGAATCCTCCATCAGTTCAGAGTCAGCAGACAACAGAAGCAGAAGATGAAGATGATTTCACGGTTCCAGTATACGACCGATCCAGCATGGTTAAAAGTAGAGTTCAAAATAGTGACCACAAGGAAAAATTGTCTTCTCCTGGATCAAAACATTCTGATTGTTCTACCATTTTGCAAGCTGGTAATGAAAAAGTTCAAAGTCATCTTACATCCTCTAGTGCCCACTCGAGACAAGTAACAATTGGGAAGAAGATGAATGACAAAAGTAGGGTTCATCCTGCAAAGTCCACAACAAATTTATTGGACAGAGGAAATACTATTGGACTTCAGAAGGAAACCAATGTATCTAAAGATCAAATATCTCAGGATAAATCCAATACTAGATTGCAAGATAGTGATGTTTGGCTACAGCGGCATTCCAGATCCAGTATTCAATTGGATGAGAGTGGATTTGTCGTTGATGTAGTTGAGCCTACAAGATTTGGGGAGGTAGACAGTGTTCCCTGCTCAAGAGTGGACTCTCATTCTTTGGGAAAGAATGAGAGCTTGAACATTCTTGTTGACAATGTTGAGAATCATGTAGAAAGGACTTATAGTTCCATGCAGGTGGGGAATGCAGACAAAAGTGACATTGTCTCTGAGAATTCAATGATTGACTCAATTTCTGGCTCGGATATCTGTCCAGATGATGTTGTAGGAATAATAGGTCAAAAACATTTTTGGAAAGCCAGAAGAGCAATTATCAAGTAAGTTTCCTGCTAATGATATTATAGCTGTCTTTTTTGTTTCCCTGTGGTGATGCATCTGAATGTCATGCTTATTATATAACTGATATAAAAATTGAAAGTTTTCTGAATCTCTAGAGAAGTTAGATGATATGCATTTCAAGTACCAGTGCTTACTTTCAATGAACTATTTCATTTCTGTCTAATCCCTTGTGATGTTTTGTGCTCACATTGTTCTTTCATTTAATTCTGTGCTCAAGTACTAAAGTTGGAAGTATAGAAGTAGATATGTTTGAATGACGAATCACTTTATGCCTTAGAAACGGTAAGAACTCATAATCTCAGGTACCCTTTTAAGTGAATCTTTGGCCCTCAATAATATTTTGACATGGCTACTGGATCATCTTATAGCAGGAACTATGCAATGTGCATACAGTTACTTTGTGCTGGGCAACCTCCGAGACAACTGATTATCTGA CGGAGATCATGGTTTATATCTAAAAGGATCTTCTAGCTCAATCCTAACAGGCCCCACGGCTTCGCACTTTTGCCCCTTCTCTTCTTGACTCTATGATTTCAGAGAAATCCATGAATTAAGCCTTACCCCTTCTTCTTCTTTCTCTTTCTTCCCGATTCCGTTGTCCCGTTATCGATTTCTCCTCTTTCATCGTTGCTTCTCACTCTCTTCATCTTCTTCTTCTGTTTAACGATTCATATCCTTTTGCTTTCTTGTCCATCCATTTTGGTCTCAAGTTTGAGCTCAATTCGATCGGATTTGAATTCCGGGTGGATAGCTTCTGGGTTTGAATGAAGTTAGACTATTTTATAGATTTTATCGACTTATAAGCTTAATTTCTAGCTCCTCGAAGTATGTTTTTGGTATTGGAGGTCGAAATGACTGGGAAACCATGTCTCTGTAAGTGTTCTTTGGGTTGAATTTGGGAGAAGAAACGATGAAGAGAGGAAAGGATGACGAGAAGACGATGGAACCTATGTTCCCTAGGCTCCATGTTAATGACACCGAGAAAGGTTGGCCAAGAGCGCCTCCAAGGAATAAGATGGCCCTCTATGAACAGTTCACTGTACCATCCAAACGTTCGAGTCCCGGGGCTCTCCCTCTTAAGGCAGATATCTCCAGCAAATCAGTTACCACACCATCCTCAAGCCAGTATATTCTTGAATTCATCGGTCCAATATGGTTAACAGACCTAACGATATCAATTTCAATAGTCTGGTATTTTACTTTTAACTGTGATCATTTGGTTCATGTTTGTTTATTGCTTTGCTGGAGCATGGAATATACCGGTTATTTTGTGAGTTTATCGTTGGCTAATCATTATCCCCTTACTCCTAATTTATTTAATTCACGGCTAACAATCATGAATCAGACTAATCATTGCAAACTCGAGTTCAATGGTTTTATTTTTTCCCATGACAGACAGACACTACTTACATTAGGTACAGGAACCGACGGAAATCTGCGCCTGCCGTTAAACCTGCCTTCACCAACTTCTACTAATCAGGTTGAAAATTCTCAAGCTCTCCCATCTGGTGAAGTAAATGAGAATCCTCCATCAGTTCAGAGTCAGCAGACAACAGAAGCAGAAGATGAAGATGATTTCACGGTTCCAGTATACGACCGATCCAGCATGGTTAAAAGTAGAGTTCAAAATAGTGACCACAAGGAAAAATTGTCTTCTCCTGGATCAAAACATTCTGATTGTTCTACCATTTTGCAAGCTGGTAATGAAAAAGTTCAAAGTCATCTTACATCCTCTAGTGCCCACTCGAGACAAGTAACAATTGGGAAGAAGATGAATGACAAAAGTAGGGTTCATCCTGCAAAGTCCACAACAAATTTATTGGACAGAGGAAATACTATTGGACTTCAGAAGGAAACCAATGTATCTAAAGATCAAATATCTCAGGATAAATCCAATACTAGATTGCAAGATAGTGATGTTTGGCTACAGCGGCATTCCAGATCCAGTATTCAATTGGATGAGAGTGGATTTGTCGTTGATGTAGTTGAGCCTACAAGATTTGGGGAGGTAGACAGTGTTCCCTGCTCAAGAGTGGACTCTCATTCTTTGGGAAAGAATGAGAGCTTGAACATTCTTGTTGACAATGTTGAGAATCATGTAGAAAGGACTTATAGTTCCATGCAGGTGGGGAATGCAGACAAAAGTGACATTGTCTCTGAGAATTCAATGATTGACTCAATTTCTGGCTCGGATATCTGTCCAGATGATGTTGTAGGAATAATAGGTCAAAAACATTTTTGGAAAGCCAGAAGAGCAATTATCAAGAACTATGCAATGTGCATACAGTTACTTTGTGCTGGGCAACCTCCGAGACAACTGATTATCTGA ATGAAGAGAGGAAAGGATGACGAGAAGACGATGGAACCTATGTTCCCTAGGCTCCATGTTAATGACACCGAGAAAGGTTGGCCAAGAGCGCCTCCAAGGAATAAGATGGCCCTCTATGAACAGTTCACTGTACCATCCAAACGTTCGAGTCCCGGGGCTCTCCCTCTTAAGGCAGATATCTCCAGCAAATCAGTTACCACACCATCCTCAAGCCAGTATATTCTTGAATTCATCGGTCCAATATGGTTAACAGACCTAACGATATCAATTTCAATAGTCTGGTATTTTACTTTTAACTGTGATCATTTGGTTCATGTTTGTTTATTGCTTTGCTGGAGCATGGAATATACCGGTTATTTTGTGAGTTTATCGTTGGCTAATCATTATCCCCTTACTCCTAATTTATTTAATTCACGGCTAACAATCATGAATCAGACTAATCATTGCAAACTCGAGTTCAATGGTTTTATTTTTTCCCATGACAGACAGACACTACTTACATTAGGTACAGGAACCGACGGAAATCTGCGCCTGCCGTTAAACCTGCCTTCACCAACTTCTACTAATCAGGTTGAAAATTCTCAAGCTCTCCCATCTGGTGAAGTAAATGAGAATCCTCCATCAGTTCAGAGTCAGCAGACAACAGAAGCAGAAGATGAAGATGATTTCACGGTTCCAGTATACGACCGATCCAGCATGGTTAAAAGTAGAGTTCAAAATAGTGACCACAAGGAAAAATTGTCTTCTCCTGGATCAAAACATTCTGATTGTTCTACCATTTTGCAAGCTGGTAATGAAAAAGTTCAAAGTCATCTTACATCCTCTAGTGCCCACTCGAGACAAGTAACAATTGGGAAGAAGATGAATGACAAAAGTAGGGTTCATCCTGCAAAGTCCACAACAAATTTATTGGACAGAGGAAATACTATTGGACTTCAGAAGGAAACCAATGTATCTAAAGATCAAATATCTCAGGATAAATCCAATACTAGATTGCAAGATAGTGATGTTTGGCTACAGCGGCATTCCAGATCCAGTATTCAATTGGATGAGAGTGGATTTGTCGTTGATGTAGTTGAGCCTACAAGATTTGGGGAGGTAGACAGTGTTCCCTGCTCAAGAGTGGACTCTCATTCTTTGGGAAAGAATGAGAGCTTGAACATTCTTGTTGACAATGTTGAGAATCATGTAGAAAGGACTTATAGTTCCATGCAGGTGGGGAATGCAGACAAAAGTGACATTGTCTCTGAGAATTCAATGATTGACTCAATTTCTGGCTCGGATATCTGTCCAGATGATGTTGTAGGAATAATAGGTCAAAAACATTTTTGGAAAGCCAGAAGAGCAATTATCAAGAACTATGCAATGTGCATACAGTTACTTTGTGCTGGGCAACCTCCGAGACAACTGATTATCTGA MKRGKDDEKTMEPMFPRLHVNDTEKGWPRAPPRNKMALYEQFTVPSKRSSPGALPLKADISSKSVTTPSSSQYILEFIGPIWLTDLTISISIVWYFTFNCDHLVHVCLLLCWSMEYTGYFVSLSLANHYPLTPNLFNSRLTIMNQTNHCKLEFNGFIFSHDRQTLLTLGTGTDGNLRLPLNLPSPTSTNQVENSQALPSGEVNENPPSVQSQQTTEAEDEDDFTVPVYDRSSMVKSRVQNSDHKEKLSSPGSKHSDCSTILQAGNEKVQSHLTSSSAHSRQVTIGKKMNDKSRVHPAKSTTNLLDRGNTIGLQKETNVSKDQISQDKSNTRLQDSDVWLQRHSRSSIQLDESGFVVDVVEPTRFGEVDSVPCSRVDSHSLGKNESLNILVDNVENHVERTYSSMQVGNADKSDIVSENSMIDSISGSDICPDDVVGIIGQKHFWKARRAIIKNYAMCIQLLCAGQPPRQLII
BLAST of Lsi08G015650 vs. Swiss-Prot
Match: ELF3_ARATH (Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana GN=ELF3 PE=1 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 7.6e-16 Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1
BLAST of Lsi08G015650 vs. TrEMBL
Match: A0A0A0LNN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G352370 PE=4 SV=1) HSP 1 Score: 441.4 bits (1134), Expect = 1.4e-120 Identity = 242/291 (83.16%), Postives = 256/291 (87.97%), Query Frame = 1
BLAST of Lsi08G015650 vs. TrEMBL
Match: B9RRW1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0798500 PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28 Identity = 112/319 (35.11%), Postives = 164/319 (51.41%), Query Frame = 1
BLAST of Lsi08G015650 vs. TrEMBL
Match: A0A088PY80_9ROSI (EARLY FLOWERING 3 OS=Dimocarpus longan PE=2 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 2.6e-23 Identity = 112/293 (38.23%), Postives = 144/293 (49.15%), Query Frame = 1
BLAST of Lsi08G015650 vs. TrEMBL
Match: A0A067KDC6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07703 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 2.2e-22 Identity = 107/293 (36.52%), Postives = 154/293 (52.56%), Query Frame = 1
BLAST of Lsi08G015650 vs. TrEMBL
Match: A0A067GMR8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004928mg PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 3.8e-22 Identity = 101/297 (34.01%), Postives = 152/297 (51.18%), Query Frame = 1
BLAST of Lsi08G015650 vs. TAIR10
Match: AT2G25930.1 (AT2G25930.1 hydroxyproline-rich glycoprotein family protein) HSP 1 Score: 86.7 bits (213), Expect = 4.3e-17 Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1
BLAST of Lsi08G015650 vs. NCBI nr
Match: gi|659087521|ref|XP_008444497.1| (PREDICTED: protein EARLY FLOWERING 3 [Cucumis melo]) HSP 1 Score: 443.7 bits (1140), Expect = 3.9e-121 Identity = 244/291 (83.85%), Postives = 257/291 (88.32%), Query Frame = 1
BLAST of Lsi08G015650 vs. NCBI nr
Match: gi|449450572|ref|XP_004143036.1| (PREDICTED: protein EARLY FLOWERING 3 [Cucumis sativus]) HSP 1 Score: 441.4 bits (1134), Expect = 2.0e-120 Identity = 242/291 (83.16%), Postives = 256/291 (87.97%), Query Frame = 1
BLAST of Lsi08G015650 vs. NCBI nr
Match: gi|645227267|ref|XP_008220435.1| (PREDICTED: protein EARLY FLOWERING 3 [Prunus mume]) HSP 1 Score: 142.1 bits (357), Expect = 2.4e-30 Identity = 116/300 (38.67%), Postives = 159/300 (53.00%), Query Frame = 1
BLAST of Lsi08G015650 vs. NCBI nr
Match: gi|255550864|ref|XP_002516480.1| (PREDICTED: protein EARLY FLOWERING 3 [Ricinus communis]) HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28 Identity = 112/319 (35.11%), Postives = 164/319 (51.41%), Query Frame = 1
BLAST of Lsi08G015650 vs. NCBI nr
Match: gi|720035550|ref|XP_010267078.1| (PREDICTED: protein EARLY FLOWERING 3-like isoform X1 [Nelumbo nucifera]) HSP 1 Score: 131.0 bits (328), Expect = 5.6e-27 Identity = 145/495 (29.29%), Postives = 233/495 (47.07%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |