Lsi08G015650.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G015650.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	EARLY FLOWERING 3
Location	chr08 : 23713770 .. 23716387 (+)
Sequence length	1894

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGAGATCATGGTTTATATCTAAAAGGATCTTCTAGCTCAATCCTAACAGGCCCCACGGCTTCGCACTTTTGCCCCTTCTCTTCTTGACTCTATGATTTCAGAGAAATCCATGAATTAAGCCTTACCCCTTCTTCTTCTTTCTCTTTCTTCCCGATTCCGTTGTCCCGTTATCGATTTCTCCTCTTTCATCGTTGCTTCTCACTCTCTTCATCTTCTTCTTCTGTTTAACGATTCATATCCTTTTGCTTTCTTGTCCATCCATTTTGGTCTCAAGTTTGAGCTCAATTCGATCGGATTTGAATTCCGGGTAAGTTGTTGGTTCTTGATACATACAAGAAAGAGAGTTCAATTCTGTCCGTTGGTTTATTTGTATTTTGTAGTATGAAAACTTGGTTGTAGGAAATCTTCTAGACTTTGAGCTCTTAATTAGGGGCTTGCAATTTCCGAGCTGATTTCAGGTGGATAGCTTCTGGGTTTGAATGAAGTTAGACTATTTTATAGATTTTATCGACTTATAAGCTTAATTTCTAGCTCCTCGAAGTATGTTTTTGGTATTGGAGGTCGAAATGACTGGGAAACCATGTCTCTGTAAGTGTTCTTTGGGTTGAATTTGGGAGAAGAAACGATGAAGAGAGGAAAGGATGACGAGAAGACGATGGAACCTATGTTCCCTAGGCTCCATGTTAATGACACCGAGAAAGGTTGGCCAAGAGCGCCTCCAAGGAATAAGATGGCCCTCTATGAACAGTTCACTGTACCATCCAAACGTTCGAGTCCCGGGGCTCTCCCTCTTAAGGCAGATATCTCCAGCAAATCAGTTACCACACCATCCTCAAGCCAGGTAGACAGTAGTCTGTGTTTTATATGTTTGAAAATTGCATCTGAGCTTTTTATCTGATGTGGGATTTGGGGAAGTTCACAGTATATTCTTGAATTCATCGGTCCAATATGGTTAACAGACCTAACGATATCAATTTCAATAGTCTGGTATTTTACTTTTAACTGTGATCATTTGGTTCATGTTTGTTTATTGCTTTGCTGGAGCATGGAATATACCGGTTATTTTGTGAGTTTATCGTTGGCTAATCATTATCCCCTTACTCCTAATTTATTTAATTCACGGCTAACAATCATGAATCAGACTAATCATTGCAAACTCGAGTTCAATGGTTTTATTTTTTCCCATGACAGACAGACACTACTTACATTAGTGAAAATATGTGTTCACATATAAGGAGCTACTAGATTCATGAGAGTTTGGTTGTTCGGAAAATGGTGCTCTTAACACCCCAACTGAAAATCTTTTCAGGGTACAGGAACCGACGGAAATCTGCGCCTGCCGTTAAACCTGCCTTCACCAACTTCTACTAATCAGGTTGAAAATTCTCAAGCTCTCCCATCTGGTGAAGTAAATGAGAATCCTCCATCAGTTCAGAGTCAGCAGACAACAGAAGCAGAAGATGAAGATGATTTCACGGTTCCAGTATACGACCGATCCAGCATGGTTAAAAGTAGAGTTCAAAATAGTGACCACAAGGAAAAATTGTCTTCTCCTGGATCAAAACATTCTGATTGTTCTACCATTTTGCAAGCTGGTAATGAAAAAGTTCAAAGTCATCTTACATCCTCTAGTGCCCACTCGAGACAAGTAACAATTGGGAAGAAGATGAATGACAAAAGTAGGGTTCATCCTGCAAAGTCCACAACAAATTTATTGGACAGAGGAAATACTATTGGACTTCAGAAGGAAACCAATGTATCTAAAGATCAAATATCTCAGGATAAATCCAATACTAGATTGCAAGATAGTGATGTTTGGCTACAGCGGCATTCCAGATCCAGTATTCAATTGGATGAGAGTGGATTTGTCGTTGATGTAGTTGAGCCTACAAGATTTGGGGAGGTAGACAGTGTTCCCTGCTCAAGAGTGGACTCTCATTCTTTGGGAAAGAATGAGAGCTTGAACATTCTTGTTGACAATGTTGAGAATCATGTAGAAAGGACTTATAGTTCCATGCAGGTGGGGAATGCAGACAAAAGTGACATTGTCTCTGAGAATTCAATGATTGACTCAATTTCTGGCTCGGATATCTGTCCAGATGATGTTGTAGGAATAATAGGTCAAAAACATTTTTGGAAAGCCAGAAGAGCAATTATCAAGTAAGTTTCCTGCTAATGATATTATAGCTGTCTTTTTTGTTTCCCTGTGGTGATGCATCTGAATGTCATGCTTATTATATAACTGATATAAAAATTGAAAGTTTTCTGAATCTCTAGAGAAGTTAGATGATATGCATTTCAAGTACCAGTGCTTACTTTCAATGAACTATTTCATTTCTGTCTAATCCCTTGTGATGTTTTGTGCTCACATTGTTCTTTCATTTAATTCTGTGCTCAAGTACTAAAGTTGGAAGTATAGAAGTAGATATGTTTGAATGACGAATCACTTTATGCCTTAGAAACGGTAAGAACTCATAATCTCAGGTACCCTTTTAAGTGAATCTTTGGCCCTCAATAATATTTTGACATGGCTACTGGATCATCTTATAGCAGGAACTATGCAATGTGCATACAGTTACTTTGTGCTGGGCAACCTCCGAGACAACTGATTATCTGA

mRNA sequence

CGGAGATCATGGTTTATATCTAAAAGGATCTTCTAGCTCAATCCTAACAGGCCCCACGGCTTCGCACTTTTGCCCCTTCTCTTCTTGACTCTATGATTTCAGAGAAATCCATGAATTAAGCCTTACCCCTTCTTCTTCTTTCTCTTTCTTCCCGATTCCGTTGTCCCGTTATCGATTTCTCCTCTTTCATCGTTGCTTCTCACTCTCTTCATCTTCTTCTTCTGTTTAACGATTCATATCCTTTTGCTTTCTTGTCCATCCATTTTGGTCTCAAGTTTGAGCTCAATTCGATCGGATTTGAATTCCGGGTGGATAGCTTCTGGGTTTGAATGAAGTTAGACTATTTTATAGATTTTATCGACTTATAAGCTTAATTTCTAGCTCCTCGAAGTATGTTTTTGGTATTGGAGGTCGAAATGACTGGGAAACCATGTCTCTGTAAGTGTTCTTTGGGTTGAATTTGGGAGAAGAAACGATGAAGAGAGGAAAGGATGACGAGAAGACGATGGAACCTATGTTCCCTAGGCTCCATGTTAATGACACCGAGAAAGGTTGGCCAAGAGCGCCTCCAAGGAATAAGATGGCCCTCTATGAACAGTTCACTGTACCATCCAAACGTTCGAGTCCCGGGGCTCTCCCTCTTAAGGCAGATATCTCCAGCAAATCAGTTACCACACCATCCTCAAGCCAGTATATTCTTGAATTCATCGGTCCAATATGGTTAACAGACCTAACGATATCAATTTCAATAGTCTGGTATTTTACTTTTAACTGTGATCATTTGGTTCATGTTTGTTTATTGCTTTGCTGGAGCATGGAATATACCGGTTATTTTGTGAGTTTATCGTTGGCTAATCATTATCCCCTTACTCCTAATTTATTTAATTCACGGCTAACAATCATGAATCAGACTAATCATTGCAAACTCGAGTTCAATGGTTTTATTTTTTCCCATGACAGACAGACACTACTTACATTAGGTACAGGAACCGACGGAAATCTGCGCCTGCCGTTAAACCTGCCTTCACCAACTTCTACTAATCAGGTTGAAAATTCTCAAGCTCTCCCATCTGGTGAAGTAAATGAGAATCCTCCATCAGTTCAGAGTCAGCAGACAACAGAAGCAGAAGATGAAGATGATTTCACGGTTCCAGTATACGACCGATCCAGCATGGTTAAAAGTAGAGTTCAAAATAGTGACCACAAGGAAAAATTGTCTTCTCCTGGATCAAAACATTCTGATTGTTCTACCATTTTGCAAGCTGGTAATGAAAAAGTTCAAAGTCATCTTACATCCTCTAGTGCCCACTCGAGACAAGTAACAATTGGGAAGAAGATGAATGACAAAAGTAGGGTTCATCCTGCAAAGTCCACAACAAATTTATTGGACAGAGGAAATACTATTGGACTTCAGAAGGAAACCAATGTATCTAAAGATCAAATATCTCAGGATAAATCCAATACTAGATTGCAAGATAGTGATGTTTGGCTACAGCGGCATTCCAGATCCAGTATTCAATTGGATGAGAGTGGATTTGTCGTTGATGTAGTTGAGCCTACAAGATTTGGGGAGGTAGACAGTGTTCCCTGCTCAAGAGTGGACTCTCATTCTTTGGGAAAGAATGAGAGCTTGAACATTCTTGTTGACAATGTTGAGAATCATGTAGAAAGGACTTATAGTTCCATGCAGGTGGGGAATGCAGACAAAAGTGACATTGTCTCTGAGAATTCAATGATTGACTCAATTTCTGGCTCGGATATCTGTCCAGATGATGTTGTAGGAATAATAGGTCAAAAACATTTTTGGAAAGCCAGAAGAGCAATTATCAAGAACTATGCAATGTGCATACAGTTACTTTGTGCTGGGCAACCTCCGAGACAACTGATTATCTGA

Coding sequence (CDS)

ATGAAGAGAGGAAAGGATGACGAGAAGACGATGGAACCTATGTTCCCTAGGCTCCATGTTAATGACACCGAGAAAGGTTGGCCAAGAGCGCCTCCAAGGAATAAGATGGCCCTCTATGAACAGTTCACTGTACCATCCAAACGTTCGAGTCCCGGGGCTCTCCCTCTTAAGGCAGATATCTCCAGCAAATCAGTTACCACACCATCCTCAAGCCAGTATATTCTTGAATTCATCGGTCCAATATGGTTAACAGACCTAACGATATCAATTTCAATAGTCTGGTATTTTACTTTTAACTGTGATCATTTGGTTCATGTTTGTTTATTGCTTTGCTGGAGCATGGAATATACCGGTTATTTTGTGAGTTTATCGTTGGCTAATCATTATCCCCTTACTCCTAATTTATTTAATTCACGGCTAACAATCATGAATCAGACTAATCATTGCAAACTCGAGTTCAATGGTTTTATTTTTTCCCATGACAGACAGACACTACTTACATTAGGTACAGGAACCGACGGAAATCTGCGCCTGCCGTTAAACCTGCCTTCACCAACTTCTACTAATCAGGTTGAAAATTCTCAAGCTCTCCCATCTGGTGAAGTAAATGAGAATCCTCCATCAGTTCAGAGTCAGCAGACAACAGAAGCAGAAGATGAAGATGATTTCACGGTTCCAGTATACGACCGATCCAGCATGGTTAAAAGTAGAGTTCAAAATAGTGACCACAAGGAAAAATTGTCTTCTCCTGGATCAAAACATTCTGATTGTTCTACCATTTTGCAAGCTGGTAATGAAAAAGTTCAAAGTCATCTTACATCCTCTAGTGCCCACTCGAGACAAGTAACAATTGGGAAGAAGATGAATGACAAAAGTAGGGTTCATCCTGCAAAGTCCACAACAAATTTATTGGACAGAGGAAATACTATTGGACTTCAGAAGGAAACCAATGTATCTAAAGATCAAATATCTCAGGATAAATCCAATACTAGATTGCAAGATAGTGATGTTTGGCTACAGCGGCATTCCAGATCCAGTATTCAATTGGATGAGAGTGGATTTGTCGTTGATGTAGTTGAGCCTACAAGATTTGGGGAGGTAGACAGTGTTCCCTGCTCAAGAGTGGACTCTCATTCTTTGGGAAAGAATGAGAGCTTGAACATTCTTGTTGACAATGTTGAGAATCATGTAGAAAGGACTTATAGTTCCATGCAGGTGGGGAATGCAGACAAAAGTGACATTGTCTCTGAGAATTCAATGATTGACTCAATTTCTGGCTCGGATATCTGTCCAGATGATGTTGTAGGAATAATAGGTCAAAAACATTTTTGGAAAGCCAGAAGAGCAATTATCAAGAACTATGCAATGTGCATACAGTTACTTTGTGCTGGGCAACCTCCGAGACAACTGATTATCTGA

Protein sequence

MKRGKDDEKTMEPMFPRLHVNDTEKGWPRAPPRNKMALYEQFTVPSKRSSPGALPLKADISSKSVTTPSSSQYILEFIGPIWLTDLTISISIVWYFTFNCDHLVHVCLLLCWSMEYTGYFVSLSLANHYPLTPNLFNSRLTIMNQTNHCKLEFNGFIFSHDRQTLLTLGTGTDGNLRLPLNLPSPTSTNQVENSQALPSGEVNENPPSVQSQQTTEAEDEDDFTVPVYDRSSMVKSRVQNSDHKEKLSSPGSKHSDCSTILQAGNEKVQSHLTSSSAHSRQVTIGKKMNDKSRVHPAKSTTNLLDRGNTIGLQKETNVSKDQISQDKSNTRLQDSDVWLQRHSRSSIQLDESGFVVDVVEPTRFGEVDSVPCSRVDSHSLGKNESLNILVDNVENHVERTYSSMQVGNADKSDIVSENSMIDSISGSDICPDDVVGIIGQKHFWKARRAIIKNYAMCIQLLCAGQPPRQLII

Homology

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BLAST of Lsi08G015650.1 vs. Swiss-Prot
Match: ELF3_ARATH (Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana GN=ELF3 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.6e-16
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1


Query: 1  MKRGKDDEKTMEPMFPRLHVNDTEKGWPRAPPRNKMALYEQFTVPSKR-SSPGALPLKAD 60
          MKRGKD+EK +EPMFPRLHVND +KG PRAPPRNKMALYEQ ++PS+R    G +  +++
Sbjct: 1  MKRGKDEEKILEPMFPRLHVNDADKGGPRAPPRNKMALYEQLSIPSQRFGDHGTMNSRSN 60

Query: 61 ISSKSVTTPSSSQ 73
           +S  V    SSQ
Sbjct: 61 NTSTLVHPGPSSQ 73

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BLAST of Lsi08G015650.1 vs. TrEMBL
Match: A0A0A0LNN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G352370 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 1.4e-120
Identity = 242/291 (83.16%), Postives = 256/291 (87.97%), Query Frame = 1


Query: 169 GTGTDGNLRLPLNLPSPTSTNQVENSQALPSGEVNENPPSVQ---SQQTTEAEDEDDFTV 228
           GTG DGNLRLPLNL SPTST+QV N+QALPSGEVNENPP VQ   S+QTTEAEDEDDF V
Sbjct: 73  GTGADGNLRLPLNLSSPTSTSQVGNTQALPSGEVNENPPLVQPEQSRQTTEAEDEDDFMV 132

Query: 229 PVYDRSSMVKSRVQNSDHKEKLSSPGSKHSDCSTILQAGNEKVQSHL--TSSSAHSRQVT 288
           PVYD+S M  S VQNSDHKEKLSSPG KHSDCSTILQAG EK Q+ L  TSSSAHSRQVT
Sbjct: 133 PVYDQSRMGISGVQNSDHKEKLSSPGPKHSDCSTILQAGYEKGQNDLDLTSSSAHSRQVT 192

Query: 289 IGKKMNDKSRVHPAKSTTNLLDRGNTIGLQKETNVSKDQISQDKSNTR---LQDSDVWLQ 348
            G K+N+KSRVHP KSTTNLLDRGNT GLQKETN+SKDQI QDKSNTR   LQDSDV L 
Sbjct: 193 NGNKVNEKSRVHPRKSTTNLLDRGNTDGLQKETNISKDQIFQDKSNTRFDKLQDSDVRLH 252

Query: 349 RHSRSSIQLDESGFVVDVVEPTRFGEVDSVPCSRVDSHSLGKNESLNILVDNVENHVERT 408
           RHSRS+IQLDESG VVDVVEPTRFGE DSVPCSRVD+HS  KNE L + VDNVENHVERT
Sbjct: 253 RHSRSNIQLDESGCVVDVVEPTRFGEADSVPCSRVDTHSSLKNERLIVPVDNVENHVERT 312

Query: 409 YSSMQVGNADKSDIVSENSMIDSISGSDICPDDVVGIIGQKHFWKARRAII 452
           YSSMQVGNADKSDIVSENSM+DS+SGS+ICPDDVVGIIGQKHFWKARRAII
Sbjct: 313 YSSMQVGNADKSDIVSENSMVDSLSGSEICPDDVVGIIGQKHFWKARRAII 363

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BLAST of Lsi08G015650.1 vs. TrEMBL
Match: B9RRW1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0798500 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 112/319 (35.11%), Postives = 164/319 (51.41%), Query Frame = 1


Query: 169 GTGTDGNLRLPLNLPSPTSTNQVENSQALPSGEVNENPPSVQSQQTTEAEDEDDFTVPVY 228
           G+G + NL LPL++P  T ++  E   +      N N  S Q +Q  +  DEDDF VPV+
Sbjct: 78  GSGYERNLHLPLHVPPSTHSHLDEKLHSRQPDGGNSNAASAQIEQRKKKGDEDDFRVPVF 137

Query: 229 DRSSMVKS--RVQNSDHKEKLSSPGSKHSDCSTILQAGNEKVQSHLTSSSAHSRQVTIGK 288
             S M +S  + Q+    E  +S G  +   ST L+   +K Q +  S   + RQ    +
Sbjct: 138 LHSGMGQSLGKTQSGIDMENSTSFGQNYLGHSTRLRDAGDKDQKNNISRGPNLRQDARNQ 197

Query: 289 KMND-----KSRVHPAKSTTNLLDRGNTIGLQKETNVSKDQISQD-KSNTRLQDSDVWLQ 348
              +      SR H  +S T+   +   I   ++ + S+  +     S++ L ++DV LQ
Sbjct: 198 SKENLEACVSSRGHSVRSFTSSPSKELMIVRPEDASPSQQNLDDPVASSSSLCENDVCLQ 257

Query: 349 RHSRSSI-QLDESGFVVDVVEPTRFGEVDSVPCSRVDSHSLGKNESLNILVDNVENHVER 408
           + + +++ Q ++SG    V E TR  E  + P    DSHS     S N    + E+H +R
Sbjct: 258 QEASAALLQQNDSGHDEGVPELTRELEKGNGPQPMSDSHSTEDLNSPNEPEIDSEHHGDR 317

Query: 409 TYSSMQVGNADKSDIVSENSMIDSISGSDICPDDVVGIIGQKHFWKARRAIIKNYAMC-- 467
           +Y S+Q GN DKSD VSE SM+DS+S  D+ PDDVVGIIGQKHFWKARRAI+    +   
Sbjct: 318 SYMSVQFGNGDKSDDVSEISMLDSVSALDVSPDDVVGIIGQKHFWKARRAIVSQQRLFAV 377

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BLAST of Lsi08G015650.1 vs. TrEMBL
Match: A0A088PY80_9ROSI (EARLY FLOWERING 3 OS=Dimocarpus longan PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.6e-23
Identity = 112/293 (38.23%), Postives = 144/293 (49.15%), Query Frame = 1


Query: 169 GTGTDGNLRLPLNLPSPTSTNQVENSQALPSGEVNENPPSVQSQQTTEAEDEDDFTVPVY 228
           G+G + N+  P+++P  T +   E   A  S       P  Q +Q  +A DEDDFTVPVY
Sbjct: 73  GSGPERNVPFPISVPHKTPSRLTEKFHARQSAGSTLTIPLPQLEQRKKAGDEDDFTVPVY 132

Query: 229 DRS--SMVKSRVQNSDHKEKLSSPGSKHSDCSTILQA--GNEKVQSHLTSSSAHSR---Q 288
             S  +   S+  N     KLS  G  +   S   Q    N+  +S L+  +       Q
Sbjct: 133 VHSGKNQNSSKTHNGVDGGKLSPYGPPYPGHSLKSQNVYDNDPKRSSLSDLNLRQEARHQ 192

Query: 289 VTIGKKMNDKSRVHPAKSTTNLLDRGNTIGLQKETNVSKDQISQDKSNT---RLQDSDVW 348
                  N  SR H  K +  L  R    GL KE + S  Q S+D   +   R  D+D  
Sbjct: 193 SEENPNTNFSSRDHSLKPSATLSSREKIDGLVKEASASPIQESRDLPESHFNRPNDNDTS 252

Query: 349 LQRHSRSSIQLDESGFVVDVVEPTRFGEVDSVPCSRVDSHSLGKNESLNILVD-NVENHV 408
           L+  +R+  Q  +     D VE  R      V  SR  SHS   N S  I  D + E   
Sbjct: 253 LRPETRTRSQPVDRR-CGDGVESMRDINKGVVHQSRSGSHSREDN-SCPIEPDIDSEYRE 312

Query: 409 ERTYSSMQVGNADKSDIVSENSMIDSISGSDICPDDVVGIIGQKHFWKARRAI 451
           E+T  S+Q+G+ DKSD VSE SM+DSISG DI PDDVVGIIGQKHFWKAR+AI
Sbjct: 313 EKTCGSLQLGDRDKSDAVSETSMVDSISGLDISPDDVVGIIGQKHFWKARKAI 363

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BLAST of Lsi08G015650.1 vs. TrEMBL
Match: A0A067KDC6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07703 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-22
Identity = 107/293 (36.52%), Postives = 154/293 (52.56%), Query Frame = 1


Query: 169 GTGTDGNLRLPLNLPSPTSTNQVENSQALPSGEVNENPPSVQSQQTTEAEDEDDFTVPVY 228
           G+G + +L+ P ++P PTS++ VEN  +  SG  N N  S Q +Q  +   EDDF VPV+
Sbjct: 73  GSGFERSLQFPNHVP-PTSSHLVENLHSHSSGG-NLNASSPQLEQRKKVGYEDDFRVPVF 132

Query: 229 DRSSM--VKSRVQNSDHKEKLSSPGSKH--SDCSTILQAGNEKVQSHLTSSSAHSRQVTI 288
            +S M     + QN     K  +P S++  S    +  AG+   +++  SS   + ++  
Sbjct: 133 VQSGMGGCLPKSQNGIDGGK-PTPFSQNYLSHSVKVKDAGDSDKKNY--SSRVPNLRLDT 192

Query: 289 GKKMNDK------SRVHPAKSTTNLLDRGNTIGLQKETNVSKDQISQDKSNTRLQDSDVW 348
             +  +K      SR H  +S+T    R     L       ++      + +R  ++D +
Sbjct: 193 RNQSEEKLEVCVSSRDHSVRSSTKFATRKKIASLGDAYQNQQNPDLPGANFSRFCENDDF 252

Query: 349 LQRHSRSSIQLDESGFVVDVVEPTRFGEVDSVPCSRVDSHSLGKNESLNILVDNVENHVE 408
           LQ+ S + +Q D SG    V E TR  E  ++ C R DS S     S N    + E   E
Sbjct: 253 LQQESTAFLQQDNSGNGEGVPELTREIEKGNIFCPRSDSLSREDCSSPNKPEIDCELSGE 312

Query: 409 RTYSSMQVGNADKSDIVSENSMIDSISGSDICPDDVVGIIGQKHFWKARRAII 452
           +T  S+Q GN DKSD VSE SM+DSIS  DI PD+VVGIIGQKHFWKARRAI+
Sbjct: 313 KTCRSLQFGNGDKSDDVSETSMVDSISALDISPDEVVGIIGQKHFWKARRAIV 360

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BLAST of Lsi08G015650.1 vs. TrEMBL
Match: A0A067GMR8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004928mg PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.8e-22
Identity = 101/297 (34.01%), Postives = 152/297 (51.18%), Query Frame = 1


Query: 169 GTGTDGNLRLPLNLPSPTSTNQVENSQALPSGEVNENPPSVQSQQTTEAEDEDDFTVPVY 228
           G G + NL    ++   T T+  E   +        N      +Q+ +  +EDDF VP++
Sbjct: 73  GNGLERNLLFAHSVHPSTPTHLDEKCHSDQPAGATLNTHLQHHEQSKKVSEEDDFAVPIF 132

Query: 229 DRSSMVK--SRVQNSDHKEKLSSPGSKHSDCSTILQAGNEKVQSHLTSSSAHSRQVTIGK 288
           D++ M +   + Q+   K  LS     ++  ST  Q   +K     +SSS   RQ   G 
Sbjct: 133 DQAGMGQCHGKSQSDVDKGNLSPFNPSNTRKSTKFQNACDKNPKRSSSSSISLRQQG-GH 192

Query: 289 KMNDKSRV------HPAKSTTNLLDRGNTIGLQKETNVSKDQISQDKSNT---RLQDSDV 348
              +  ++       PAKS+ NL  R    G+ KE + S +Q  ++ S +   R+ DSD 
Sbjct: 193 VCQENPKICISIGNFPAKSSVNLSIREKIDGIVKEVSASPNQEYREISGSDFSRINDSDA 252

Query: 349 WLQRHSRSSIQLDESGFV-VDVVEPTRFGEVDSVPCSRVDSHSLGKNESLNILVDNVENH 408
            L+  S +   L  +G    D V+ T   + + V   R D+HS       + L ++   H
Sbjct: 253 SLRLESGAG--LPPNGCCRYDDVDSTGDFQKEVVLQPRGDTHSTEDCGHRSGLHNDSRYH 312

Query: 409 VERTYSSMQVGNADKSDIVSENSMIDSISGSDICPDDVVGIIGQKHFWKARRAIIKN 454
           V++T  S+Q+G+ DKSD VSE SM+DS+SG D+ PDDVVGIIG KHFWKARRAI+K+
Sbjct: 313 VDKTCGSLQLGSGDKSDDVSETSMVDSMSGVDMSPDDVVGIIGHKHFWKARRAIVKS 366

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BLAST of Lsi08G015650.1 vs. TAIR10
Match: AT2G25930.1 (AT2G25930.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 86.7 bits (213), Expect = 4.3e-17
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1


Query: 1  MKRGKDDEKTMEPMFPRLHVNDTEKGWPRAPPRNKMALYEQFTVPSKR-SSPGALPLKAD 60
          MKRGKD+EK +EPMFPRLHVND +KG PRAPPRNKMALYEQ ++PS+R    G +  +++
Sbjct: 1  MKRGKDEEKILEPMFPRLHVNDADKGGPRAPPRNKMALYEQLSIPSQRFGDHGTMNSRSN 60

Query: 61 ISSKSVTTPSSSQ 73
           +S  V    SSQ
Sbjct: 61 NTSTLVHPGPSSQ 73

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BLAST of Lsi08G015650.1 vs. NCBI nr
Match: gi|659087521|ref|XP_008444497.1| (PREDICTED: protein EARLY FLOWERING 3 [Cucumis melo])

HSP 1 Score: 443.7 bits (1140), Expect = 3.9e-121
Identity = 244/291 (83.85%), Postives = 257/291 (88.32%), Query Frame = 1


Query: 169 GTGTDGNLRLPLNLPSPTSTNQVENSQALPSGEVNENPPSVQ---SQQTTEAEDEDDFTV 228
           GTG DGNLRLPLNL S TST+QV NSQALPSGEVNENPP VQ   SQQTTEAEDEDDF V
Sbjct: 73  GTGADGNLRLPLNLSSTTSTSQVGNSQALPSGEVNENPPLVQPEQSQQTTEAEDEDDFMV 132

Query: 229 PVYDRSSMVKSRVQNSDHKEKLSSPGSKHSDCSTILQAGNEKVQSHL--TSSSAHSRQVT 288
           PVY++S M KS VQNSDHKEKLSSPG KHSDCSTILQAG EK Q+ L  TSSSAHSRQVT
Sbjct: 133 PVYNQSRMGKSGVQNSDHKEKLSSPGPKHSDCSTILQAGYEKGQNDLDLTSSSAHSRQVT 192

Query: 289 IGKKMNDKSRVHPAKSTTNLLDRGNTIGLQKETNVSKDQISQDKSNTR---LQDSDVWLQ 348
            GKK+N+KS VHP KSTTNL DRGNT GLQKETN+SKD+I QDKSNTR   LQDS V LQ
Sbjct: 193 NGKKVNEKSGVHPRKSTTNLSDRGNTDGLQKETNISKDKIFQDKSNTRFDKLQDSGVRLQ 252

Query: 349 RHSRSSIQLDESGFVVDVVEPTRFGEVDSVPCSRVDSHSLGKNESLNILVDNVENHVERT 408
           RHSRS+IQLDESG VVDV+EPTRFGEVDSVPCSRVDSHS  KNES N+ VDNVENHVERT
Sbjct: 253 RHSRSNIQLDESGCVVDVIEPTRFGEVDSVPCSRVDSHSSLKNESFNVPVDNVENHVERT 312

Query: 409 YSSMQVGNADKSDIVSENSMIDSISGSDICPDDVVGIIGQKHFWKARRAII 452
           YSSMQVGNADKSDIVSENSM+DSISGS+ICPDDVVGIIGQKHFWKARRAII
Sbjct: 313 YSSMQVGNADKSDIVSENSMVDSISGSEICPDDVVGIIGQKHFWKARRAII 363

[Close]

BLAST of Lsi08G015650.1 vs. NCBI nr
Match: gi|449450572|ref|XP_004143036.1| (PREDICTED: protein EARLY FLOWERING 3 [Cucumis sativus])

HSP 1 Score: 441.4 bits (1134), Expect = 2.0e-120
Identity = 242/291 (83.16%), Postives = 256/291 (87.97%), Query Frame = 1


Query: 169 GTGTDGNLRLPLNLPSPTSTNQVENSQALPSGEVNENPPSVQ---SQQTTEAEDEDDFTV 228
           GTG DGNLRLPLNL SPTST+QV N+QALPSGEVNENPP VQ   S+QTTEAEDEDDF V
Sbjct: 73  GTGADGNLRLPLNLSSPTSTSQVGNTQALPSGEVNENPPLVQPEQSRQTTEAEDEDDFMV 132

Query: 229 PVYDRSSMVKSRVQNSDHKEKLSSPGSKHSDCSTILQAGNEKVQSHL--TSSSAHSRQVT 288
           PVYD+S M  S VQNSDHKEKLSSPG KHSDCSTILQAG EK Q+ L  TSSSAHSRQVT
Sbjct: 133 PVYDQSRMGISGVQNSDHKEKLSSPGPKHSDCSTILQAGYEKGQNDLDLTSSSAHSRQVT 192

Query: 289 IGKKMNDKSRVHPAKSTTNLLDRGNTIGLQKETNVSKDQISQDKSNTR---LQDSDVWLQ 348
            G K+N+KSRVHP KSTTNLLDRGNT GLQKETN+SKDQI QDKSNTR   LQDSDV L 
Sbjct: 193 NGNKVNEKSRVHPRKSTTNLLDRGNTDGLQKETNISKDQIFQDKSNTRFDKLQDSDVRLH 252

Query: 349 RHSRSSIQLDESGFVVDVVEPTRFGEVDSVPCSRVDSHSLGKNESLNILVDNVENHVERT 408
           RHSRS+IQLDESG VVDVVEPTRFGE DSVPCSRVD+HS  KNE L + VDNVENHVERT
Sbjct: 253 RHSRSNIQLDESGCVVDVVEPTRFGEADSVPCSRVDTHSSLKNERLIVPVDNVENHVERT 312

Query: 409 YSSMQVGNADKSDIVSENSMIDSISGSDICPDDVVGIIGQKHFWKARRAII 452
           YSSMQVGNADKSDIVSENSM+DS+SGS+ICPDDVVGIIGQKHFWKARRAII
Sbjct: 313 YSSMQVGNADKSDIVSENSMVDSLSGSEICPDDVVGIIGQKHFWKARRAII 363

[Close]

BLAST of Lsi08G015650.1 vs. NCBI nr
Match: gi|645227267|ref|XP_008220435.1| (PREDICTED: protein EARLY FLOWERING 3 [Prunus mume])

HSP 1 Score: 142.1 bits (357), Expect = 2.4e-30
Identity = 116/300 (38.67%), Postives = 159/300 (53.00%), Query Frame = 1


Query: 169 GTGTDGNLRLPLNLPSPTSTNQVENSQALPSGEVNENPPSVQSQQTTEAEDEDDFTVPVY 228
           G+ ++GNL +PL++   T T Q E   A  S   NEN P  Q  Q  +  +EDDF VPV+
Sbjct: 72  GSRSEGNLPVPLHVRPSTPTRQAEMFHARQSDGANENTPLTQPDQRKKVGEEDDFRVPVF 131

Query: 229 DRSSM--VKSRVQNSDHKEKL-----SSPGSKHSDCSTILQAGNEKVQSHLTSSSAHSRQ 288
            +S M    S+ Q    KEKL     S  G  HS  +  L+   +     L+S +  + +
Sbjct: 132 VQSRMGLCHSKTQIGIDKEKLAPIGPSHSGHTHSGHTVKLKNVGKNDPKQLSSPTTFNLR 191

Query: 289 VTIGK-------KMNDKSRVHPAKSTTNLLDRGNTIGLQKETNVSKDQISQD---KSNTR 348
             +         K++  +R H AKS T +  R    G  +E + S +Q   D      +R
Sbjct: 192 RELRSEREEDLIKVSGPARDHSAKSATKISCRQKIDGPAEEVSASPNQEYADCPVPRFSR 251

Query: 349 LQDSDVWLQRHSRSSIQLDESGFVVDVVEPTRFGEVDSVPCSRVDSHSLGKNESLNILVD 408
           L +SD  LQ+ SRS  Q + +G    +VE TR  E  +V   R  S+S       N L +
Sbjct: 252 LSESDACLQQESRSGSQPNITGQGDGLVECTRDAEKGAVFQERSLSYSGEDPGGPNELDN 311

Query: 409 NVENHVERTYSSMQVGNADKSDIVSENSMIDSISGSDICPDDVVGIIGQKHFWKARRAII 452
           + E H +RT  S Q+G+ DKSD VSE SM+DS+SG DI PDDVVGIIGQKHFWKAR+AI+
Sbjct: 312 DSEYHGDRTCISPQMGHVDKSDDVSETSMVDSVSGLDISPDDVVGIIGQKHFWKARKAIV 371

[Close]

BLAST of Lsi08G015650.1 vs. NCBI nr
Match: gi|255550864|ref|XP_002516480.1| (PREDICTED: protein EARLY FLOWERING 3 [Ricinus communis])

HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28
Identity = 112/319 (35.11%), Postives = 164/319 (51.41%), Query Frame = 1


Query: 169 GTGTDGNLRLPLNLPSPTSTNQVENSQALPSGEVNENPPSVQSQQTTEAEDEDDFTVPVY 228
           G+G + NL LPL++P  T ++  E   +      N N  S Q +Q  +  DEDDF VPV+
Sbjct: 78  GSGYERNLHLPLHVPPSTHSHLDEKLHSRQPDGGNSNAASAQIEQRKKKGDEDDFRVPVF 137

Query: 229 DRSSMVKS--RVQNSDHKEKLSSPGSKHSDCSTILQAGNEKVQSHLTSSSAHSRQVTIGK 288
             S M +S  + Q+    E  +S G  +   ST L+   +K Q +  S   + RQ    +
Sbjct: 138 LHSGMGQSLGKTQSGIDMENSTSFGQNYLGHSTRLRDAGDKDQKNNISRGPNLRQDARNQ 197

Query: 289 KMND-----KSRVHPAKSTTNLLDRGNTIGLQKETNVSKDQISQD-KSNTRLQDSDVWLQ 348
              +      SR H  +S T+   +   I   ++ + S+  +     S++ L ++DV LQ
Sbjct: 198 SKENLEACVSSRGHSVRSFTSSPSKELMIVRPEDASPSQQNLDDPVASSSSLCENDVCLQ 257

Query: 349 RHSRSSI-QLDESGFVVDVVEPTRFGEVDSVPCSRVDSHSLGKNESLNILVDNVENHVER 408
           + + +++ Q ++SG    V E TR  E  + P    DSHS     S N    + E+H +R
Sbjct: 258 QEASAALLQQNDSGHDEGVPELTRELEKGNGPQPMSDSHSTEDLNSPNEPEIDSEHHGDR 317

Query: 409 TYSSMQVGNADKSDIVSENSMIDSISGSDICPDDVVGIIGQKHFWKARRAIIKNYAMC-- 467
           +Y S+Q GN DKSD VSE SM+DS+S  D+ PDDVVGIIGQKHFWKARRAI+    +   
Sbjct: 318 SYMSVQFGNGDKSDDVSEISMLDSVSALDVSPDDVVGIIGQKHFWKARRAIVSQQRLFAV 377

[Close]

BLAST of Lsi08G015650.1 vs. NCBI nr
Match: gi|720035550|ref|XP_010267078.1| (PREDICTED: protein EARLY FLOWERING 3-like isoform X1 [Nelumbo nucifera])

HSP 1 Score: 131.0 bits (328), Expect = 5.6e-27
Identity = 145/495 (29.29%), Postives = 233/495 (47.07%), Query Frame = 1


Query: 1   MKRGKDDEKTMEPMFPRLHVNDTEKGWPRAPPRNKMALYEQFTVPSKRSSPG---ALPLK 60
           MKRG+D+EK   P+FPRLHVNDTEKG PRAPPRNKMALYE  ++PS+R +P     LPL 
Sbjct: 1   MKRGRDEEKITGPLFPRLHVNDTEKGGPRAPPRNKMALYELLSIPSQRFNPRLAPTLPLP 60

Query: 61  ADISSKSVTTPSSSQ---YILEFIGPIWLTDLTISISIVWYFTFNCDHLVHVCLLLCWSM 120
            + S  SV++ SSSQ   +    + P +L   T + S     + + D       +  +  
Sbjct: 61  PNNSCTSVSSISSSQSGGHERSVLSPFYLQPPTSTHSAGKLHSSSSDGANLNGTMAEFDR 120

Query: 121 EYTGYFVSLSLANHYPLTPNLFNSRLTIMNQTNHCKLEFNGFIFSHDRQTLLTLGTGTDG 180
           + T         NH P       + L   +  + C    +   FS+ R+ +     G + 
Sbjct: 121 KST------KNVNHRPSNAT---TGLLSTSDRSSC----HSHAFSNLRKRI----PGDED 180

Query: 181 NLRLPL---NLPSPTSTNQVENSQALPSGEVNENPPSVQSQQTTEAEDEDDFTVPVYDRS 240
           +LR+P+   +  SP S   + N+    S E      S  S ++T AED      P+   +
Sbjct: 181 DLRVPVFVHSQVSPCSDKDIPNT----SRERFSPFISTNSDRSTVAEDNS----PLKTAA 240

Query: 241 SMVKSRVQNSDHKEKLSSPGSKHSDCSTILQAGNEKVQSHLTSSSAHSRQVTIGKKMNDK 300
           +   S +Q  +  +K   P           +  + K + H+ +    + + T+  K +  
Sbjct: 241 ATCNSSMQPQNACDKSQKP----------TRTTDMKSKQHVRNQFKENLKETVTGKNH-- 300

Query: 301 SRVHPAKSTTNLLDRGNTIG---LQKETNVSKDQISQDKSNTRLQDSDVWLQRHSRSSIQ 360
                A+++T++   G  I       +T+ +++  +    + RL D+D    + + S++ 
Sbjct: 301 -----AENSTSISSMGERIAEPLKHDKTSGNQELQNGQVGSRRLCDADAERHQENGSAMF 360

Query: 361 LDESGFV-VDVVEPTRFGEVDSVPCSRVDSHSLGKNESLNILVDNVEN----HVERTYSS 420
               G   V +VEP    E +++   R +S S     + +   +  EN    H E  + S
Sbjct: 361 PKICGDADVHLVEPNEV-EKENISRERNESCSEASPVNSHRNPERAENGGHYHEEMVHES 420

Query: 421 MQVGNADKSDIVSENSMIDSISGSDICPDDVVGIIGQKHFWKARRAIIKNYAMC------ 467
           +QVG+ D +D  SE+SM+DS+ G+DI PDD VG+IG+K FWKARRAI+    +       
Sbjct: 421 LQVGDVDGNDDASESSMVDSVLGADISPDDAVGVIGKKRFWKARRAIVNQQKLFAVQVFE 452

The following BLAST results are available for this feature:

BLAST of Lsi08G015650.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ELF3_ARATH	7.6e-16	60.27	Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana GN=ELF3 PE=1 SV=1	[more]

BLAST of Lsi08G015650.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNN2_CUCSA	1.4e-120	83.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G352370 PE=4 SV=1	[more]
B9RRW1_RICCO	1.6e-28	35.11	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0798500 PE=4 SV=1	[more]
A0A088PY80_9ROSI	2.6e-23	38.23	EARLY FLOWERING 3 OS=Dimocarpus longan PE=2 SV=1	[more]
A0A067KDC6_JATCU	2.2e-22	36.52	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07703 PE=4 SV=1	[more]
A0A067GMR8_CITSI	3.8e-22	34.01	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004928mg PE=4 SV=1	[more]

BLAST of Lsi08G015650.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G25930.1	4.3e-17	60.27	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of Lsi08G015650.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659087521\|ref\|XP_008444497.1\|	3.9e-121	83.85	PREDICTED: protein EARLY FLOWERING 3 [Cucumis melo]	[more]
gi\|449450572\|ref\|XP_004143036.1\|	2.0e-120	83.16	PREDICTED: protein EARLY FLOWERING 3 [Cucumis sativus]	[more]
gi\|645227267\|ref\|XP_008220435.1\|	2.4e-30	38.67	PREDICTED: protein EARLY FLOWERING 3 [Prunus mume]	[more]
gi\|255550864\|ref\|XP_002516480.1\|	2.3e-28	35.11	PREDICTED: protein EARLY FLOWERING 3 [Ricinus communis]	[more]
gi\|720035550\|ref\|XP_010267078.1\|	5.6e-27	29.29	PREDICTED: protein EARLY FLOWERING 3-like isoform X1 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi08G015650	Lsi08G015650	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi08G015650.1	Lsi08G015650.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi08G015650.1.five_prime_UTR.1	Lsi08G015650.1.five_prime_UTR.1	five_prime_UTR
Lsi08G015650.1.five_prime_UTR.2	Lsi08G015650.1.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi08G015650.1.CDS.1	Lsi08G015650.1.CDS.1	CDS
Lsi08G015650.1.CDS.2	Lsi08G015650.1.CDS.2	CDS
Lsi08G015650.1.CDS.3	Lsi08G015650.1.CDS.3	CDS
Lsi08G015650.1.CDS.4	Lsi08G015650.1.CDS.4	CDS

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34281	FAMILY NOT NAMED	coord: 113..452 score: 2.1E-52coord: 1..93 score: 2.1
None	No IPR available	PANTHER	PTHR34281:SF2	SUBFAMILY NOT NAMED	coord: 1..93 score: 2.1E-52coord: 113..452 score: 2.1