Lsi08G016840 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G016840
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	BnaCnng31780D protein
Location	chr08 : 24581280 .. 24584734 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGATCTTCTCTTCTTTACTTCCAAATTTTGACTTGAAAGTTGAATCAGATAGCCAAGGGAACATGGCGGCTTGCTGTTCCTGGAAAACCCTACGAATTTCTTCCTCTTCCGCTAGAGCTCTCCTTCACCGTTCCTCACCCTCTCCCTCTGCATCTCATTTTGTGTCCAAACCTACTATATCTGCCGGACTTCCTTTCGCAAAGCCGTCCGCATCTTCCCGCTTATCTGTTCAGAAGCTTACAAACTTCAGGTTATTTTACTTATTTATTTTTCCTTTTTTGCTATTCGCTCTTTTTCGATTTGGAGGTATGTTGGAACTATACGAGTCAGTAATGTAATGTCGTCTTCTTCGGCTCCAAGATTTGGCATTTCTCAATTTCAATGGCCACAACTTTTTATTTTTTTTAAAACTAGTTTCTTGGATTTAATCCATGCTATTTTCTGCTTCTATTTCCCTAGAGAGGTGATAAATTTTCTTTTCTAAAATATAAGTATTGACCCCAGTTCTTTAAAGTACACTTACTGGGTTGGCTCATCTATTTTTACCCATCCACGATCAAGATATGGGATTTTATGCATTTCTCTACTTACTGAAGATAATCATCATGACGGCTCAGTGTTTTTATGCTAAATGTCGCTGCTTCTTTAGGCTTCCAGTGGAGTTATCAAGCGTGCAGTCTCTAATGCCATTGCACAATGTTACTGCTTCTGCCTTGTTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGGTAACCTTTCTAGTTTTAGGCTTTTAGCTCATTCCATATTGTCAAAATTAGCTCACCTGAAATTTCTAACATATACACTTCGATAAGATATTAAGATCTTTGAGGTTTATTGTAGTTAGACGATTCTTCAAGTTATTGCAATCTGATATTCGTGTTTTGTAATTGATACATGTTTTGTTAAACCACCTATCAGAACCATATTCTAACTTTTTATTGATTCCATAATCCACTGAGGTAATCATGTTCCGTTATGCCCCCATTTGTTCGGACGTAACCGGTTGTTATGGTAAATAGCGATTTCCCGTTTTTCATGCTTCCAAAAAGACATAAGTATGAACTTGTCGTGTGATAAATTGATCGAGAGGCCTTCCAATTGTTTGTTAATCTATAGTTTCTGTCTCTATGTTAAATTACTGTTACCATTAGAAACATAACTGCTTGGTTAGAGTTAATTCAAAAAAGGAAAAAAAAAGTAACATTTGATAAATTTATAGAAATGCCATGCAATTGTGTTTTAACCTTTGTTTTCTGTTTCTATGTTAAATTACTGCTACTAGAAGACTAATTGTTTGGTTAGACTTAATTTAAGATCTTGGATTGTTTGTGCTATTTTCCCGTGGGTTTGAATTTTTGTTTGTTAATGAGGTTTGATACATTTACTGTTGATTTTGAAATCTTGATCAGATGCCTGTGCAAGAATTTTTAATTCAATATCTTCTGATTCAGTATCATTTTTAAGTTATCACTAATTCCGGACAACATACTAATGACAAGCAGTGATTTAACTCTATGAATTGTTAAAGTTTCTGGTGTAATATTAATTTCTAGAATTGAATCAAATGAATCTCTACCTCTAAATGAGGGGAGATGACCTTTATTTATAGGAAAAATGTGAGTACAAGTTTGTTAAAGAAAGCTAACAAATCAAAATAACAAACAAACTATTTAACAACTAACTCACTTAACAACTAACAATTGACTGTTTGACTAACAAACTAAAACTTACAAACTGTAGTTTTGTTATTACACCATATTCCACCCCCTTAAGATTAGACTCATCCTCAAGGAAATTATGATGCCAATTGGAAATCATCAGGGGCAAAGTAAGGCTTTAAGTTAGCAACATTAAATACCGGATTGATAGGTAAATCACTTGGTAATTCAATGCGGTATGCATTGGAACCATACTTCTCCAACACTTTGAAGGGTCCCAATTGTCTATCTTTCAATTTGTTGTAAGTGCCGGTAGGAAATCTAGCTTTTTGTAGATGAATCATGACTAAGTCTCCTTCTTCAAAATCAACTACCCTTCGAGATTTGTCTTTAGTTTCTTTGTGAGATAAAGTGGTCTTCTCTAAATGATCGTGGACTTCTCGATGAAGCTCTTCAATTCATTCAACCATGTTCTCCGCTTCGATGCTAACATCCACAAATGAAGGAAGATTAGCAAGGTCAAAAGTGAGACGAGGAGCTCAAATGTATACTACTTCAAAAGGACATCTTCCGGTAGATCTATTCTTCATGTTATTAAAAGCAAATCGGCTTGTGCTAGGGACAAATTCCATTGTTTTGGCCTTGAACCACTTAAGCATCGAATGAGATTCCCCAACGTTCTATTAGTCACCTCTGTTTAACCGTTAGTTTGAGGATGTGAAGTAGTGCTGAATTTCAAAGTAGTATCAAATTTCTTCCACATAGTGCGCCAGAAATGGCTAAAGAACTTCACATTTCGATCTGAAACAATTGTCTTAGGAACTTTATGAAGTCGAACAACTTCTCTAAAGAAGAGATTGGCTATATAAATTGCATCGTTTGTCTTCTTACAAGCCAAGAAGTGAGCCATCTTGCTGAATCGATCTACGACTACCATTACAGCATCATAACCTCTTTGTGTCTTTGGTAATCCAAGGACAAAATCAATAGACAAATCCTCCCAAATAGATGTAGGTATAGGCAGCGGCGAATATAGGCCAACATTAGTGCTTGTGCCTTTGGCAAATGGAACATCTTTTAACAAAGTTATTTGTATCTCTTTGAAGTTGCGGCCAATAAAACTGAGTTGATACTATTTCAAATGTTTTATTTTGGCCAAAATGTCCAGCCGAGCCTCCTGAATGGGCGTTTTTTATAAGTGCCTCTCGAAGAGAAGTATGTGGAATACACAGTTGTTCTCCTTTGAATAAGAAACCATCCACAATATGGAAGTCCTTCAACCTGAACATAGGTGGGCAACGTGTGCAAGACCAAGTGGCGGAGGAAACACCCGTCCTTTCTTCAAGAAGTACAACGGTATGCTTGCTGTCCGTTGAAGACTCTTTGGGAGATATTCATGAAAAGTTGGATAGTGTGCAAGAATCGATGAAAACACTAGCGAGAAAGATGGAATTACTGACATCTCCTCAACATAGCGAAAATGTCCCGACATTCATTCAAGAATGAGGGAGTTGGGAGGAGAGGCAGGCATGGTGCTGGTCGACCAGGGTATGTGCAACATCAGCAAGAAGAAGTCCAAGAAAGGGCTCAAAGAAATCACCTACCTTGGAGACAATTCCAAGAAATCCAAAGACCATGACAAGATCTTCAAGAAAGACATCAAGAATTCCAAGACTGGGATTCTTCAAGCGAATACGACCAAGAAGATGAGTTCAATGATCCAAGAGGAAGGCAAGAAGAACGATATGAAGTAA

mRNA sequence

CGATCTTCTCTTCTTTACTTCCAAATTTTGACTTGAAAGTTGAATCAGATAGCCAAGGGAACATGGCGGCTTGCTGTTCCTGGAAAACCCTACGAATTTCTTCCTCTTCCGCTAGAGCTCTCCTTCACCGTTCCTCACCCTCTCCCTCTGCATCTCATTTTGTGTCCAAACCTACTATATCTGCCGGACTTCCTTTCGCAAAGCCGTCCGCATCTTCCCGCTTATCTGTTCAGAAGCTTACAAACTTCAGGCTTCCAGTGGAGTTATCAAGCGTGCAGTCTCTAATGCCATTGCACAATGTTACTGCTTCTGCCTTGTTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGGCATGGTGCTGGTCGACCAGGGTATGTGCAACATCAGCAAGAAGAAGTCCAAGAAAGGGCTCAAAGAAATCACCTACCTTGGAGACAATTCCAAGAAATCCAAAGACCATGACAAGATCTTCAAGAAAGACATCAAGAATTCCAAGACTGGGATTCTTCAAGCGAATACGACCAAGAAGATGAGTTCAATGATCCAAGAGGAAGGCAAGAAGAACGATATGAAGTAA

Coding sequence (CDS)

ATGGCGGCTTGCTGTTCCTGGAAAACCCTACGAATTTCTTCCTCTTCCGCTAGAGCTCTCCTTCACCGTTCCTCACCCTCTCCCTCTGCATCTCATTTTGTGTCCAAACCTACTATATCTGCCGGACTTCCTTTCGCAAAGCCGTCCGCATCTTCCCGCTTATCTGTTCAGAAGCTTACAAACTTCAGGCTTCCAGTGGAGTTATCAAGCGTGCAGTCTCTAATGCCATTGCACAATGTTACTGCTTCTGCCTTGTTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGGCATGGTGCTGGTCGACCAGGGTATGTGCAACATCAGCAAGAAGAAGTCCAAGAAAGGGCTCAAAGAAATCACCTACCTTGGAGACAATTCCAAGAAATCCAAAGACCATGACAAGATCTTCAAGAAAGACATCAAGAATTCCAAGACTGGGATTCTTCAAGCGAATACGACCAAGAAGATGAGTTCAATGATCCAAGAGGAAGGCAAGAAGAACGATATGAAGTAA

Protein sequence

MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEGMVLVDQGMCNISKKKSKKGLKEITYLGDNSKKSKDHDKIFKKDIKNSKTGILQANTTKKMSSMIQEEGKKNDMK

Homology

[Close]

BLAST of Lsi08G016840 vs. TrEMBL
Match: A0A0A0L605_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G667190 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.3e-36
Identity = 84/104 (80.77%), Postives = 91/104 (87.50%), Query Frame = 1


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAACCSWKT+ ISSSSAR LLHRSS SPSASHFVS PT+S GLP AKP ASSR SV +LT
Sbjct: 1   MAACCSWKTIPISSSSARGLLHRSSSSPSASHFVSNPTMSGGLPSAKPPASSRFSVHRLT 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEGM 105
           NFRLPVEL+S+QSLMPL +VTAS LFTSLLS HNNSWGCLS+ M
Sbjct: 61  NFRLPVELASMQSLMPLRSVTASPLFTSLLSFHNNSWGCLSKAM 104

[Close]

BLAST of Lsi08G016840 vs. TrEMBL
Match: W9S1U8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027782 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.7e-21
Identity = 73/138 (52.90%), Postives = 96/138 (69.57%), Query Frame = 1


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTIS-AGLPFAKPSASSRLSVQKL 60
           MAA C  +TLR+SS+SA+ LL RSS SPS   F SK     AGL  +KPS++SR S+ KL
Sbjct: 1   MAANCVRQTLRVSSASAKILL-RSSSSPSL--FASKAASKLAGLAASKPSSASRFSLHKL 60

Query: 61  TNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEGMVLVDQGMCNISKKKS 120
            + RLPVEL+S+QSLMPLH+VTASALFTS+LSLHNN WGCLSE +  ++   C  + +  
Sbjct: 61  NSSRLPVELASLQSLMPLHSVTASALFTSMLSLHNNKWGCLSEDLD-IELNKCGDAAEWI 120

Query: 121 KKGLKEITYLGDNSKKSK 138
           ++    +T   D  ++SK
Sbjct: 121 ERDFTGLTRTEDGPQQSK 134

[Close]

BLAST of Lsi08G016840 vs. TrEMBL
Match: M5XZ31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013767mg PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.6e-19
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 1


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAA C+ +TL+ SSSSA+ LL  +  SP    F SK +    L   K +++SRL+ QKL 
Sbjct: 1   MAANCARRTLQFSSSSAKTLLCSTPSSP----FASKASNLIELTAVKSTSASRLAAQKLK 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEG 104
             R PVEL+ VQSL+PLH+ TASALFTSLLSLHNNSWGCLSEG
Sbjct: 61  LSRFPVELAGVQSLIPLHSATASALFTSLLSLHNNSWGCLSEG 99

[Close]

BLAST of Lsi08G016840 vs. TrEMBL
Match: M5WSP4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025390mg PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-18
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 1


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAA  + +TL+ SSSSA+ LL R+  SP    F SK +    L   KP+++ RL+ QKL 
Sbjct: 1   MAANSTRRTLQFSSSSAKTLLCRTPSSP----FASKASNLIELTAVKPTSAPRLAAQKLK 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEG 104
             R PVEL+ VQSL+PLH+ TASALFTSLLSLHNNSWGCLSEG
Sbjct: 61  LSRFPVELAGVQSLIPLHSATASALFTSLLSLHNNSWGCLSEG 99

[Close]

BLAST of Lsi08G016840 vs. TrEMBL
Match: B9SHB5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0528610 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-17
Identity = 59/103 (57.28%), Postives = 75/103 (72.82%), Query Frame = 1


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAA  + +TL++SS+SA+ LL  S+     S F SK   SAGL  ++PS+S+R    KL 
Sbjct: 1   MAAIGARRTLQLSSASAKTLLTNSTKKAPTSSFASKAATSAGLS-SRPSSSTRF---KLN 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEG 104
           + RLP+EL +  SLMP+H+VTASALFTSLLSLHN SWGCLSEG
Sbjct: 61  SSRLPLELGAALSLMPMHSVTASALFTSLLSLHNQSWGCLSEG 99

[Close]

BLAST of Lsi08G016840 vs. TAIR10
Match: AT1G70350.1 (AT1G70350.1 unknown protein)

HSP 1 Score: 79.0 bits (193), Expect = 3.4e-15
Identity = 57/104 (54.81%), Postives = 71/104 (68.27%), Query Frame = 1


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASS-RLSVQKL 60
           MAA    + L+ SSSS + L  RSS + SAS    K   SAG+ F   S+SS R S+++L
Sbjct: 1   MAANGVRRALQASSSSGKILFGRSSAATSAS----KIGKSAGIAFGNGSSSSTRPSLRRL 60

Query: 61  TNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEG 104
           T  R+PVELS+  SL+PLH+VTASAL TSLLSL N +W CLSEG
Sbjct: 61  TFSRVPVELSAGISLIPLHSVTASALLTSLLSLSNQNWSCLSEG 100

[Close]

BLAST of Lsi08G016840 vs. NCBI nr
Match: gi|449455661|ref|XP_004145570.1| (PREDICTED: uncharacterized protein LOC101210124 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 1.9e-36
Identity = 84/104 (80.77%), Postives = 91/104 (87.50%), Query Frame = 1


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAACCSWKT+ ISSSSAR LLHRSS SPSASHFVS PT+S GLP AKP ASSR SV +LT
Sbjct: 1   MAACCSWKTIPISSSSARGLLHRSSSSPSASHFVSNPTMSGGLPSAKPPASSRFSVHRLT 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEGM 105
           NFRLPVEL+S+QSLMPL +VTAS LFTSLLS HNNSWGCLS+ M
Sbjct: 61  NFRLPVELASMQSLMPLRSVTASPLFTSLLSFHNNSWGCLSKAM 104

[Close]

BLAST of Lsi08G016840 vs. NCBI nr
Match: gi|659105255|ref|XP_008453050.1| (PREDICTED: uncharacterized protein LOC103493873 isoform X1 [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 9.8e-33
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 1


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAACCSWKT+ ISSSSARALLHR S SPSASHFVS PT+S GL  A+P+ASSR SVQ+LT
Sbjct: 1   MAACCSWKTIPISSSSARALLHRPSSSPSASHFVSIPTMSGGLHSARPAASSRFSVQRLT 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEGM 105
           NF LPVEL+S+QSLMPL +VTASALFTSLLS HNNS  CLS+ M
Sbjct: 61  NFSLPVELASMQSLMPLRSVTASALFTSLLSFHNNSRRCLSKAM 104

[Close]

BLAST of Lsi08G016840 vs. NCBI nr
Match: gi|703113779|ref|XP_010100470.1| (hypothetical protein L484_027782 [Morus notabilis])

HSP 1 Score: 110.2 bits (274), Expect = 3.9e-21
Identity = 73/138 (52.90%), Postives = 96/138 (69.57%), Query Frame = 1


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTIS-AGLPFAKPSASSRLSVQKL 60
           MAA C  +TLR+SS+SA+ LL RSS SPS   F SK     AGL  +KPS++SR S+ KL
Sbjct: 1   MAANCVRQTLRVSSASAKILL-RSSSSPSL--FASKAASKLAGLAASKPSSASRFSLHKL 60

Query: 61  TNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEGMVLVDQGMCNISKKKS 120
            + RLPVEL+S+QSLMPLH+VTASALFTS+LSLHNN WGCLSE +  ++   C  + +  
Sbjct: 61  NSSRLPVELASLQSLMPLHSVTASALFTSMLSLHNNKWGCLSEDLD-IELNKCGDAAEWI 120

Query: 121 KKGLKEITYLGDNSKKSK 138
           ++    +T   D  ++SK
Sbjct: 121 ERDFTGLTRTEDGPQQSK 134

[Close]

BLAST of Lsi08G016840 vs. NCBI nr
Match: gi|1009153763|ref|XP_015894802.1| (PREDICTED: uncharacterized protein LOC107428731 [Ziziphus jujuba])

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-19
Identity = 60/103 (58.25%), Postives = 78/103 (75.73%), Query Frame = 1


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAA C+ +T+++SS S + LL  SS   S S F S+ +  +GL  +KP+ +SR SV KL 
Sbjct: 1   MAANCARRTVQVSSGSVKTLLSFSS---SPSSFASRASKLSGLAASKPNFASRFSVPKLR 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEG 104
             R+PVEL+S+QSLMP+H+VTA+ALFTSLLSLHNN WGCLSEG
Sbjct: 61  FSRIPVELASMQSLMPMHSVTAAALFTSLLSLHNNKWGCLSEG 100

[Close]

BLAST of Lsi08G016840 vs. NCBI nr
Match: gi|645230169|ref|XP_008221809.1| (PREDICTED: uncharacterized protein LOC103321758 [Prunus mume])

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-18
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 1


Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAA C+ +TL+ SSSSA+ LL  +  SP    F SK +    L   KP+++ RL+ QKL 
Sbjct: 1   MAANCARRTLQFSSSSAKTLLCCTPSSP----FASKASNLIELTAVKPTSAPRLAAQKLK 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEG 104
             R PVEL+ VQSL+PLH+ TASALFTSLLSLHNNSWGCLSEG
Sbjct: 61  LSRFPVELAGVQSLIPLHSATASALFTSLLSLHNNSWGCLSEG 99

The following BLAST results are available for this feature:

BLAST of Lsi08G016840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi08G016840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L605_CUCSA	1.3e-36	80.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G667190 PE=4 SV=1	[more]
W9S1U8_9ROSA	2.7e-21	52.90	Uncharacterized protein OS=Morus notabilis GN=L484_027782 PE=4 SV=1	[more]
M5XZ31_PRUPE	9.6e-19	59.22	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013767mg PE=4 SV=1	[more]
M5WSP4_PRUPE	1.3e-18	59.22	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025390mg PE=4 SV=1	[more]
B9SHB5_RICCO	2.4e-17	57.28	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0528610 PE=4 SV=1	[more]

BLAST of Lsi08G016840 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70350.1	3.4e-15	54.81	unknown protein	[more]

BLAST of Lsi08G016840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455661\|ref\|XP_004145570.1\|	1.9e-36	80.77	PREDICTED: uncharacterized protein LOC101210124 [Cucumis sativus]	[more]
gi\|659105255\|ref\|XP_008453050.1\|	9.8e-33	77.88	PREDICTED: uncharacterized protein LOC103493873 isoform X1 [Cucumis melo]	[more]
gi\|703113779\|ref\|XP_010100470.1\|	3.9e-21	52.90	hypothetical protein L484_027782 [Morus notabilis]	[more]
gi\|1009153763\|ref\|XP_015894802.1\|	1.6e-19	58.25	PREDICTED: uncharacterized protein LOC107428731 [Ziziphus jujuba]	[more]
gi\|645230169\|ref\|XP_008221809.1\|	1.1e-18	59.22	PREDICTED: uncharacterized protein LOC103321758 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006364	rRNA processing
biological_process	GO:0008150	biological_process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0008173	RNA methyltransferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G016840.1	Lsi08G016840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156	FAMILY NOT NAMED	coord: 1..117 score: 3.4
None	No IPR available	PANTHER	PTHR33156:SF11	SUBFAMILY NOT NAMED	coord: 1..117 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G016840	CmaCh05G000080	Cucurbita maxima (Rimu)	cmalsiB739
Lsi08G016840	Cla000795	Watermelon (97103) v1	lsiwmB462
Lsi08G016840	ClCG08G018060	Watermelon (Charleston Gray)	lsiwcgB438
Lsi08G016840	Cla97C08G161840	Watermelon (97103) v2	lsiwmbB444
Lsi08G016840	Bhi11G001409	Wax gourd	lsiwgoB583
Lsi08G016840	Cp4.1LG11g00630	Cucurbita pepo (Zucchini)	cpelsiB100
Lsi08G016840	Carg21806	Silver-seed gourd	carlsiB454

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G016840	Cucumber (Gy14) v1	cgylsiB637
Lsi08G016840	Cucurbita maxima (Rimu)	cmalsiB188
Lsi08G016840	Cucurbita moschata (Rifu)	cmolsiB178
Lsi08G016840	Cucurbita moschata (Rifu)	cmolsiB731
Lsi08G016840	Cucurbita pepo (Zucchini)	cpelsiB691
Lsi08G016840	Wild cucumber (PI 183967)	cpilsiB141
Lsi08G016840	Cucumber (Chinese Long) v2	culsiB142
Lsi08G016840	Melon (DHL92) v3.5.1	lsimeB469
Lsi08G016840	Cucumber (Gy14) v2	cgyblsiB129
Lsi08G016840	Melon (DHL92) v3.6.1	lsimedB489
Lsi08G016840	Silver-seed gourd	carlsiB568
Lsi08G016840	Cucumber (Chinese Long) v3	cuclsiB155