Carg21806 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21806
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial
Location	Cucurbita_argyrosperma_scaffold_192 : 32290 .. 33287 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGCAGGCCCAGTTTGGAACAGCCCAAGGAAACTCCATAGGCTTAGTTTTCGTCCCAGAGGTCTATCAGATCGCTCCTCTTCCACTTCTTACTTCCAAGCTCTCGCTTCACACAGACAGCCAACCAAATATGGCGGCTTGCTCTACCTGGAAAACCCTACGAATTTCCTCCTCTTCCGCAAGAACCCTCCTTCAACGTTCCTCCTCCTCCCCCCCCTCTGCGTCTCATCTTGTGTCCAAACCTACGATGTCTGCGCCACTTCCTTCTGCAAAGCCGTCCGCATCTTCCCGCTTCTCTGTTCCGAAGCTTACCAACTTCAGGTATGTTTTTGGTTGTTTTGCTTTACTTATGGTATCCGCTCCTTTTCGATTTGGAGTTATGTTGGAAATATATAGTTCAGTAATGTAATGCCGTTTTCTTCGGCTCCAAGATTTGGCATTTCTCAATTTCAATGGCCACAACCTTTTCCATTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAACTAGTTTCTTGGATTTAATCCATGTTATCAGTTTCTATTTCCCTTAAGAGGTGATCGTTTCTCTTTTCTAAAATCTAAGTAATTGCCCGTTCTTTAAGTACATTTACTGGGTTAGCTCATCTATTTTTACCCATCCACGATCGAATTTTTGCGATTCTATGCATTCTATACTTACTGAAGATAATCATCATGAAGACTCAAGAGTTTTTATGCTAAATGCTGCTGCTCCTTTAGGCTTCCAGTGGAGTTGTCAAGCGTGCAGTCTCTAATGCCATTGCACAGTGCTACTGCTTCTGCCTTGTTTACTTCCCTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGGTAACCTTTCTACCTTACTTCCTTGCGTCAATGTTAAATTACGCTATTAGAACATGCGATAAATTTATAGAATTGCCTTGCAATTGTGTTGACCTTTAATTTCTGAGTTTCTATATTAAATTACGCTATTAGA

mRNA sequence

ACGCAGGCCCAGTTTGGAACAGCCCAAGGAAACTCCATAGGCTTAGTTTTCGTCCCAGAGGTCTATCAGATCGCTCCTCTTCCACTTCTTACTTCCAAGCTCTCGCTTCACACAGACAGCCAACCAAATATGGCGGCTTGCTCTACCTGGAAAACCCTACGAATTTCCTCCTCTTCCGCAAGAACCCTCCTTCAACGTTCCTCCTCCTCCCCCCCCTCTGCGTCTCATCTTGTGTCCAAACCTACGATGTCTGCGCCACTTCCTTCTGCAAAGCCGTCCGCATCTTCCCGCTTCTCTGTTCCGAAGCTTACCAACTTCAGGCTTCCAGTGGAGTTGTCAAGCGTGCAGTCTCTAATGCCATTGCACAGTGCTACTGCTTCTGCCTTGTTTACTTCCCTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGGTAACCTTTCTACCTTACTTCCTTGCGTCAATGTTAAATTACGCTATTAGAACATGCGATAAATTTATAGAATTGCCTTGCAATTGTGTTGACCTTTAATTTCTGAGTTTCTATATTAAATTACGCTATTAGA

Coding sequence (CDS)

ACGCAGGCCCAGTTTGGAACAGCCCAAGGAAACTCCATAGGCTTAGTTTTCGTCCCAGAGGTCTATCAGATCGCTCCTCTTCCACTTCTTACTTCCAAGCTCTCGCTTCACACAGACAGCCAACCAAATATGGCGGCTTGCTCTACCTGGAAAACCCTACGAATTTCCTCCTCTTCCGCAAGAACCCTCCTTCAACGTTCCTCCTCCTCCCCCCCCTCTGCGTCTCATCTTGTGTCCAAACCTACGATGTCTGCGCCACTTCCTTCTGCAAAGCCGTCCGCATCTTCCCGCTTCTCTGTTCCGAAGCTTACCAACTTCAGGCTTCCAGTGGAGTTGTCAAGCGTGCAGTCTCTAATGCCATTGCACAGTGCTACTGCTTCTGCCTTGTTTACTTCCCTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGGTAACCTTTCTACCTTACTTCCTTGCGTCAATGTTAAATTACGCTATTAG

Protein sequence

TQAQFGTAQGNSIGLVFVPEVYQIAPLPLLTSKLSLHTDSQPNMAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEGNLSTLLPCVNVKLRY

Homology

[Close]

BLAST of Carg21806 vs. NCBI nr
Match: XP_022961783.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita moschata])

HSP 1 Score: 184.9 bits (468), Expect = 2.2e-43
Identity = 102/104 (98.08%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 44  MAACSTWKTLRISSSSARTLLQRXXXXXPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 103
           MAACSTWKTLRISSSSARTLLQR XXX PSASHLVSKPTMSAPLPSAKPSASSRFSVPKL
Sbjct: 1   MAACSTWKTLRISSSSARTLLQRSXXXPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60

Query: 104 TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEG 148
           TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEG
Sbjct: 61  TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEG 104

[Close]

BLAST of Carg21806 vs. NCBI nr
Match: XP_022996536.1 (uncharacterized protein LOC111491756 isoform X2 [Cucurbita maxima] >XP_023546953.1 uncharacterized protein LOC111805899 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.9 bits (450), Expect = 2.7e-41
Identity = 98/103 (95.15%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 44  MAACSTWKTLRISSSSARTLLQRXXXXXPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 103
           MAACSTWKTLRISSSSARTLLQR     PSASHLVSKPTMSAPLPSAKPSASSRFSVPKL
Sbjct: 1   MAACSTWKTLRISSSSARTLLQR-SSSSPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60

Query: 104 TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE 147
           TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE
Sbjct: 61  TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE 102

[Close]

BLAST of Carg21806 vs. NCBI nr
Match: XP_022159141.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 145.2 bits (365), Expect = 1.9e-31
Identity = 83/104 (79.81%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 44  MAACSTWKTLRISSSSARTLLQRXXXXXPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 103
           MAAC TWKTLR+SSSS RTL+ R   XX  ASH VS+PT    LPSAKP+AS RFSV KL
Sbjct: 1   MAACCTWKTLRMSSSSTRTLICR-SSXXXXASHFVSRPTKPTGLPSAKPAASPRFSVQKL 60

Query: 104 TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEG 148
           TN RLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWGCLSEG
Sbjct: 61  TNLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSEG 103

[Close]

BLAST of Carg21806 vs. NCBI nr
Match: XP_004145570.1 (PREDICTED: uncharacterized protein LOC101210124 [Cucumis sativus] >KGN55566.1 hypothetical protein Csa_4G667190 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 78/103 (75.73%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 44  MAACSTWKTLRISSSSARTLLQRXXXXXPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 103
           MAAC +WKT+ ISSSSAR LL R     PSASH VS PTMS  LPSAKP ASSRFSV +L
Sbjct: 1   MAACCSWKTIPISSSSARGLLHR-SSSSPSASHFVSNPTMSGGLPSAKPPASSRFSVHRL 60

Query: 104 TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE 147
           TNFRLPVEL+S+QSLMPL S TAS LFTSLLS HNNSWGCLS+
Sbjct: 61  TNFRLPVELASMQSLMPLRSVTASPLFTSLLSFHNNSWGCLSK 102

[Close]

BLAST of Carg21806 vs. NCBI nr
Match: XP_008453050.1 (PREDICTED: dual-specificity RNA methyltransferase RlmN isoform X1 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 7.1e-26
Identity = 74/103 (71.84%), Postives = 82/103 (79.61%), Query Frame = 0


Query: 44  MAACSTWKTLRISSSSARTLLQRXXXXXPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 103
           MAAC +WKT+ ISSSSAR LL R     PSASH VS PTMS  L SA+P+ASSRFSV +L
Sbjct: 1   MAACCSWKTIPISSSSARALLHR-PSSSPSASHFVSIPTMSGGLHSARPAASSRFSVQRL 60

Query: 104 TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE 147
           TNF LPVEL+S+QSLMPL S TASALFTSLLS HNNS  CLS+
Sbjct: 61  TNFSLPVELASMQSLMPLRSVTASALFTSLLSFHNNSRRCLSK 102

[Close]

BLAST of Carg21806 vs. TAIR10
Match: AT1G70350.1 (unknown protein)

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-13
Identity = 56/110 (50.91%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 44  MAACSTWKTLRISSSSARTLLQRXXXXXPSASHLVSKPTMSAPLPSAKPSASS-RFSVPK 103
           MAA    + L+ SSSS + L  R      SA+   SK   SA +     S+SS R S+ +
Sbjct: 1   MAANGVRRALQASSSSGKILFGR-----SSAATSASKIGKSAGIAFGNGSSSSTRPSLRR 60

Query: 104 LTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEGNLSTL 153
           LT  R+PVELS+  SL+PLHS TASAL TSLLSL N +W CLSEG  STL
Sbjct: 61  LTFSRVPVELSAGISLIPLHSVTASALLTSLLSLSNQNWSCLSEGFASTL 105

[Close]

BLAST of Carg21806 vs. TAIR10
Match: AT1G55205.2 (unknown protein)

HSP 1 Score: 51.6 bits (122), Expect = 5.3e-07
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 76  HLVSKPTMSAPLPSAKP-SASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLL 135
           H+ S P   +P+ S+ P SA+SR +     +FRLPVELS   S++PLHSA ASA   S L
Sbjct: 27  HISSLP---SPIKSSSPSSATSRIN----QSFRLPVELSCCLSMLPLHSAIASARLISSL 86

Query: 136 SLHNNSWGCLSEG 148
           S+ + SWG + +G
Sbjct: 87  SVESKSWGLVPQG 92

[Close]

BLAST of Carg21806 vs. TAIR10
Match: AT1G28395.2 (unknown protein)

HSP 1 Score: 44.7 bits (104), Expect = 6.4e-05
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 86  PLPSAKPSASSRFSVPK---LTN--FRLPVELS-SVQSLMPLHSATASALFTSLLSLHNN 142
           P+PS   SA + F +PK   LTN  FR PVELS  V++++P H+ATASAL  S+LS+   
Sbjct: 28  PMPS---SARTAFRMPKQSPLTNRIFRSPVELSCCVETMLPYHTATASALLNSMLSVSRR 86

[Close]

BLAST of Carg21806 vs. TAIR10
Match: AT5G11630.1 (unknown protein)

HSP 1 Score: 44.3 bits (103), Expect = 8.4e-05
Identity = 36/86 (41.86%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 78  VSKPTMSA-----PLPSAKP-SASSRFSVPKLTNFRLPV-ELSSVQSLMPLHSATASALF 137
           +SKP  SA       PS +P SASS   VP    F  P+ +L S+QSL+PL+SA ASA  
Sbjct: 8   LSKPAFSAFRSAMNKPSIRPKSASSFIGVPPSPGFSRPIGQLGSLQSLLPLYSAVASARL 67

Query: 138 TSLLSLHNNSWGCLSEGNLSTLLPCV 157
           TS L + + +   L++G L +  P V
Sbjct: 68  TSCLGIDSQNSRSLAQGMLCSANPGV 93

[Close]

BLAST of Carg21806 vs. TAIR10
Match: AT2G20585.1 (nuclear fusion defective 6)

HSP 1 Score: 42.7 bits (99), Expect = 2.4e-04
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 58  SSARTLLQRXXXXXPSASHLVSKPTMSAPLPSAKP--SASSRFSVPKLTNFRLPVELS-S 117
           S AR++L+       S S   S    ++   SA P   A++R S P L+  R PVELS  
Sbjct: 8   SGARSMLR----AASSRSAAASTGRFASQAKSAPPLFRATARRS-PLLSPLRNPVELSFC 67

Query: 118 VQSLMPLHSATASALFTSLLSLHNNSWGCLSE 147
           V+SL+P HSATASAL TS LS+   ++G LS+
Sbjct: 68  VESLLPYHSATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of Carg21806 vs. TrEMBL
Match: tr|A0A0A0L605|A0A0A0L605_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G667190 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.0e-30
Identity = 78/103 (75.73%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 44  MAACSTWKTLRISSSSARTLLQRXXXXXPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 103
           MAAC +WKT+ ISSSSAR LL R     PSASH VS PTMS  LPSAKP ASSRFSV +L
Sbjct: 1   MAACCSWKTIPISSSSARGLLHR-SSSSPSASHFVSNPTMSGGLPSAKPPASSRFSVHRL 60

Query: 104 TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE 147
           TNFRLPVEL+S+QSLMPL S TAS LFTSLLS HNNSWGCLS+
Sbjct: 61  TNFRLPVELASMQSLMPLRSVTASPLFTSLLSFHNNSWGCLSK 102

[Close]

BLAST of Carg21806 vs. TrEMBL
Match: tr|A0A1S3BVB5|A0A1S3BVB5_CUCME (dual-specificity RNA methyltransferase RlmN isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493873 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.7e-26
Identity = 74/103 (71.84%), Postives = 82/103 (79.61%), Query Frame = 0


Query: 44  MAACSTWKTLRISSSSARTLLQRXXXXXPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 103
           MAAC +WKT+ ISSSSAR LL R     PSASH VS PTMS  L SA+P+ASSRFSV +L
Sbjct: 1   MAACCSWKTIPISSSSARALLHR-PSSSPSASHFVSIPTMSGGLHSARPAASSRFSVQRL 60

Query: 104 TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE 147
           TNF LPVEL+S+QSLMPL S TASALFTSLLS HNNS  CLS+
Sbjct: 61  TNFSLPVELASMQSLMPLRSVTASALFTSLLSFHNNSRRCLSK 102

[Close]

BLAST of Carg21806 vs. TrEMBL
Match: tr|A0A2P5CEA1|A0A2P5CEA1_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_160860 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-19
Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = 0


Query: 44  MAACSTWKTLRISSSSARTLLQRXXXXXPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 103
           MAA    +TLR+SS+SA+TL        PSAS   SK +  + L ++KP+++SRFS  KL
Sbjct: 1   MAANCVRQTLRVSSASAKTL----WTSSPSASAFASKASKLSGLAASKPNSASRFSFQKL 60

Query: 104 TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEGNLSTLLP 155
            + RLPVEL+S+QSLMPLHSATASALFTSLLSLHN +WGCLSE ++ T+ P
Sbjct: 61  NSSRLPVELASLQSLMPLHSATASALFTSLLSLHNVNWGCLSE-DIITIWP 106

[Close]

BLAST of Carg21806 vs. TrEMBL
Match: tr|A0A2P5FME0|A0A2P5FME0_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_051810 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.9e-19
Identity = 63/103 (61.17%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 44  MAACSTWKTLRISSSSARTLLQRXXXXXPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 103
           MAA    +TLR+SS+SA+TL        PSAS   SK +  + L ++KP+++SRFS  KL
Sbjct: 1   MAANCVRQTLRVSSASAKTL----WTSSPSASAFASKASKLSGLAASKPNSASRFSFQKL 60

Query: 104 TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE 147
            + RLPVEL+S+QSLMPLHSATASALFTSLLSLHN +WGCLSE
Sbjct: 61  NSSRLPVELASLQSLMPLHSATASALFTSLLSLHNVNWGCLSE 99

[Close]

BLAST of Carg21806 vs. TrEMBL
Match: tr|W9S1U8|W9S1U8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_027782 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 44  MAACSTWKTLRISSSSARTLLQRXXXXXPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 103
           MAA    +TLR+SS+SA+ LL+        AS   SK    A L ++KPS++SRFS+ KL
Sbjct: 1   MAANCVRQTLRVSSASAKILLRSSSSPSLFASKAASK---LAGLAASKPSSASRFSLHKL 60

Query: 104 TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE 147
            + RLPVEL+S+QSLMPLHS TASALFTS+LSLHNN WGCLSE
Sbjct: 61  NSSRLPVELASLQSLMPLHSVTASALFTSMLSLHNNKWGCLSE 100

The following BLAST results are available for this feature:

BLAST of Carg21806 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961783.1	2.2e-43	98.08	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita mosch...	[more]
XP_022996536.1	2.7e-41	95.15	uncharacterized protein LOC111491756 isoform X2 [Cucurbita maxima] >XP_023546953...	[more]
XP_022159141.1	1.9e-31	79.81	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica chara...	[more]
XP_004145570.1	1.1e-29	75.73	PREDICTED: uncharacterized protein LOC101210124 [Cucumis sativus] >KGN55566.1 hy...	[more]
XP_008453050.1	7.1e-26	71.84	PREDICTED: dual-specificity RNA methyltransferase RlmN isoform X1 [Cucumis melo]	[more]

BLAST of Carg21806 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70350.1	3.8e-13	50.91	unknown protein	[more]
AT1G55205.2	5.3e-07	46.58	unknown protein	[more]
AT1G28395.2	6.4e-05	50.00	unknown protein	[more]
AT5G11630.1	8.4e-05	41.86	unknown protein	[more]
AT2G20585.1	2.4e-04	43.48	nuclear fusion defective 6	[more]

BLAST of Carg21806 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg21806 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L605\|A0A0A0L605_CUCSA	7.0e-30	75.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G667190 PE=4 SV=1	[more]
tr\|A0A1S3BVB5\|A0A1S3BVB5_CUCME	4.7e-26	71.84	dual-specificity RNA methyltransferase RlmN isoform X1 OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A2P5CEA1\|A0A2P5CEA1_PARAD	1.5e-19	58.56	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_160860 PE...	[more]
tr\|A0A2P5FME0\|A0A2P5FME0_9ROSA	1.9e-19	61.17	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_051810 PE=4 S...	[more]
tr\|W9S1U8\|W9S1U8_9ROSA	1.2e-18	60.19	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_027782 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21806-RA	Carg21806-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..97
None	No IPR available	PANTHER	PTHR33156	FAMILY NOT NAMED	coord: 44..151
None	No IPR available	PANTHER	PTHR33156:SF11	SUBFAMILY NOT NAMED	coord: 44..151

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21806	Cla000795	Watermelon (97103) v1	carwmB0499
Carg21806	ClCG08G018060	Watermelon (Charleston Gray)	carwcgB0490
Carg21806	CmaCh05G000080	Cucurbita maxima (Rimu)	carcmaB0707
Carg21806	CmoCh05G000090	Cucurbita moschata (Rifu)	carcmoB0686
Carg21806	Lsi08G016840	Bottle gourd (USVL1VR-Ls)	carlsiB454
Carg21806	Cla97C08G161840	Watermelon (97103) v2	carwmbB0528

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21806	Wax gourd	carwgoB0610
Carg21806	Wax gourd	carwgoB0613
Carg21806	Silver-seed gourd	carcarB283
Carg21806	Silver-seed gourd	carcarB488
Carg21806	Cucumber (Gy14) v2	carcgybB0506
Carg21806	Cucumber (Gy14) v2	carcgybB0507
Carg21806	Cucumber (Gy14) v1	carcgyB0575
Carg21806	Cucumber (Gy14) v1	carcgyB0576
Carg21806	Cucurbita maxima (Rimu)	carcmaB0704
Carg21806	Cucurbita maxima (Rimu)	carcmaB0706
Carg21806	Cucurbita moschata (Rifu)	carcmoB0684
Carg21806	Cucurbita moschata (Rifu)	carcmoB0685
Carg21806	Cucurbita pepo (Zucchini)	carcpeB0709
Carg21806	Cucurbita pepo (Zucchini)	carcpeB0710
Carg21806	Cucurbita pepo (Zucchini)	carcpeB0711
Carg21806	Wild cucumber (PI 183967)	carcpiB0537
Carg21806	Wild cucumber (PI 183967)	carcpiB0538
Carg21806	Cucumber (Chinese Long) v2	carcuB0529
Carg21806	Cucumber (Chinese Long) v2	carcuB0530
Carg21806	Cucumber (Chinese Long) v3	carcucB0535
Carg21806	Cucumber (Chinese Long) v3	carcucB0536
Carg21806	Bottle gourd (USVL1VR-Ls)	carlsiB453
Carg21806	Melon (DHL92) v3.5.1	carmeB0505
Carg21806	Melon (DHL92) v3.5.1	carmeB0506
Carg21806	Melon (DHL92) v3.6.1	carmedB0510
Carg21806	Melon (DHL92) v3.6.1	carmedB0511
Carg21806	Watermelon (Charleston Gray)	carwcgB0489
Carg21806	Watermelon (97103) v1	carwmB0501
Carg21806	Watermelon (97103) v2	carwmbB0527