Lsi09G016830 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.CCTAATTCGAAACAGAGGGCAAGGGTTTTGTTCAATTCAGTTCCTATGCGATTCATCGCTGAAGTGAAAAGTGACCAAAGCTATTTTAGCATCCTTCCCCTCCCCAACTTGTCTTTCACTATTGCGTTAACCTCGAAGCTCTCTGGCGATTCGAAAATGGCGAAGGCCCCTCCCGATTCGCAGAGCAACAGAGCAGCGGTGCAGGCCACCAACGACGACGCCTCTGCCAGTAAACTGTGAGCAAACTCATTTTAACGCATTATTCTGTCATTATCTTTACGCGTTCGTGATCCATTCTGAGCATTTTCCAGTTTTCAAATTCGGCGCTTCAAATTTTGCTTTAGATTGCCTTTTTTTTCCCGCCTTCTCAACGCCGTCGAGGTGGTCTTTTGTTTTCACGAGTCGATGTTGATTGCATGAAAGCACTCTTCATCCTTAAGGAACTTTCCAGTTGGTGTACACGCTAAGATTTCGTTATTTTGGTTGGCACTTGGTGAAGAATCCTCACTCTATCATATGGGATGGGATGCAATCATGCTAGAATTAATTTTAGTTCCATGCTCGTAGTTGGACTCTGTTCTCACAAAAACAATTTTGATCCATCATTTATTTATGAACATTGAATCTGGTCCATTCTTTGGTAGAGTTTAAAAATGAGCTGGGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATTTATGCGTCAGGATGTAATATGAGCTTCCCCTGTTTGGTTAACAGATCATGTGTTAGAAAGGGATACATGAAAGACGACTACATACACCTTTTTGTACGAAGGCCTGTCAAGAGATCTCCAATTATCAATCGAGGTACAATCTTGTGTTGCTTCCCTTAAATATATCATTTTTTAGAACTTTCTTTTATTCACTTTGTAGTAATTTTCTTTACGTTGTTGCTAATAAGGTTATTTTGCCCGGTGGGCCGCACTGAGGAAGCTCCTCTTTCAATTCCTCAATGTTGGAAGTAATACAGAGGAACATACAAAGAAGCAGATATTATCGCTTGGAGCTGGCTTTGACACAACGTACTTCCAATTGCAGGCAAGCTGCTTAATTAGGTCACGGGCTACAACATCTTTAGCCTAG CCTAATTCGAAACAGAGGGCAAGGGTTTTGTTCAATTCAGTTCCTATGCGATTCATCGCTGAAGTGAAAAGTGACCAAAGCTATTTTAGCATCCTTCCCCTCCCCAACTTGTCTTTCACTATTGCGTTAACCTCGAAGCTCTCTGGCGATTCGAAAATGGCGAAGGCCCCTCCCGATTCGCAGAGCAACAGAGCAGCGGTGCAGGCCACCAACGACGACGCCTCTGCCAGTAAACTATCATGTGTTAGAAAGGGATACATGAAAGACGACTACATACACCTTTTTGTACGAAGGCCTGTCAAGAGATCTCCAATTATCAATCGAGGTTATTTTGCCCGGTGGGCCGCACTGAGGAAGCTCCTCTTTCAATTCCTCAATGTTGGAAGTAATACAGAGGAACATACAAAGAAGCAGATATTATCGCTTGGAGCTGGCTTTGACACAACGTACTTCCAATTGCAGGCAAGCTGCTTAATTAGGTCACGGGCTACAACATCTTTAGCCTAG CCTAATTCGAAACAGAGGGCAAGGGTTTTGTTCAATTCAGTTCCTATGCGATTCATCGCTGAAGTGAAAAGTGACCAAAGCTATTTTAGCATCCTTCCCCTCCCCAACTTGTCTTTCACTATTGCGTTAACCTCGAAGCTCTCTGGCGATTCGAAAATGGCGAAGGCCCCTCCCGATTCGCAGAGCAACAGAGCAGCGGTGCAGGCCACCAACGACGACGCCTCTGCCAGTAAACTATCATGTGTTAGAAAGGGATACATGAAAGACGACTACATACACCTTTTTGTACGAAGGCCTGTCAAGAGATCTCCAATTATCAATCGAGGTTATTTTGCCCGGTGGGCCGCACTGAGGAAGCTCCTCTTTCAATTCCTCAATGTTGGAAGTAATACAGAGGAACATACAAAGAAGCAGATATTATCGCTTGGAGCTGGCTTTGACACAACGTACTTCCAATTGCAGGCAAGCTGCTTAATTAGGTCACGGGCTACAACATCTTTAGCCTAG PNSKQRARVLFNSVPMRFIAEVKSDQSYFSILPLPNLSFTIALTSKLSGDSKMAKAPPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRRPVKRSPIINRGYFARWAALRKLLFQFLNVGSNTEEHTKKQILSLGAGFDTTYFQLQASCLIRSRATTSLA
BLAST of Lsi09G016830 vs. Swiss-Prot
Match: TYW4_MOUSE (tRNA wybutosine-synthesizing protein 4 OS=Mus musculus GN=Lcmt2 PE=2 SV=4) HSP 1 Score: 83.6 bits (205), Expect = 2.3e-15 Identity = 45/107 (42.06%), Postives = 65/107 (60.75%), Query Frame = 1
BLAST of Lsi09G016830 vs. Swiss-Prot
Match: TYW4_RAT (tRNA wybutosine-synthesizing protein 4 OS=Rattus norvegicus GN=Lcmt2 PE=2 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 9.7e-14 Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 1
BLAST of Lsi09G016830 vs. Swiss-Prot
Match: TYW4_HUMAN (tRNA wybutosine-synthesizing protein 4 OS=Homo sapiens GN=LCMT2 PE=1 SV=3) HSP 1 Score: 75.1 bits (183), Expect = 8.2e-13 Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 1
BLAST of Lsi09G016830 vs. Swiss-Prot
Match: LCMT1_GIBZE (Leucine carboxyl methyltransferase 1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PPM1 PE=3 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.8e-12 Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 1
BLAST of Lsi09G016830 vs. Swiss-Prot
Match: LCMT1_NEUCR (Leucine carboxyl methyltransferase 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ppm-1 PE=3 SV=2) HSP 1 Score: 70.1 bits (170), Expect = 2.6e-11 Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = 1
BLAST of Lsi09G016830 vs. TrEMBL
Match: A0A0A0KCH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G104610 PE=4 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 4.2e-48 Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 1
BLAST of Lsi09G016830 vs. TrEMBL
Match: B9RCZ7_RICCO (Leucine carboxyl methyltransferase, putative OS=Ricinus communis GN=RCOM_1608280 PE=4 SV=1) HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40 Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 1
BLAST of Lsi09G016830 vs. TrEMBL
Match: V4VYW4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021096mg PE=4 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 1.4e-40 Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 1
BLAST of Lsi09G016830 vs. TrEMBL
Match: A0A067H0I8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018210mg PE=4 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 1.4e-40 Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 1
BLAST of Lsi09G016830 vs. TrEMBL
Match: A0A067HCC6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018210mg PE=4 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 1.4e-40 Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 1
BLAST of Lsi09G016830 vs. TAIR10
Match: AT1G02100.3 (AT1G02100.3 Leucine carboxyl methyltransferase) HSP 1 Score: 152.9 bits (385), Expect = 1.7e-37 Identity = 76/95 (80.00%), Postives = 87/95 (91.58%), Query Frame = 1
BLAST of Lsi09G016830 vs. NCBI nr
Match: gi|659119671|ref|XP_008459781.1| (PREDICTED: tRNA wybutosine-synthesizing protein 4 [Cucumis melo]) HSP 1 Score: 200.3 bits (508), Expect = 2.7e-48 Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 1
BLAST of Lsi09G016830 vs. NCBI nr
Match: gi|449445505|ref|XP_004140513.1| (PREDICTED: tRNA wybutosine-synthesizing protein 4 [Cucumis sativus]) HSP 1 Score: 199.1 bits (505), Expect = 6.0e-48 Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 1
BLAST of Lsi09G016830 vs. NCBI nr
Match: gi|700191300|gb|KGN46504.1| (hypothetical protein Csa_6G104610 [Cucumis sativus]) HSP 1 Score: 199.1 bits (505), Expect = 6.0e-48 Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 1
BLAST of Lsi09G016830 vs. NCBI nr
Match: gi|255541044|ref|XP_002511586.1| (PREDICTED: tRNA wybutosine-synthesizing protein 4 [Ricinus communis]) HSP 1 Score: 174.5 bits (441), Expect = 1.6e-40 Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 1
BLAST of Lsi09G016830 vs. NCBI nr
Match: gi|641866829|gb|KDO85513.1| (hypothetical protein CISIN_1g018210mg [Citrus sinensis]) HSP 1 Score: 174.1 bits (440), Expect = 2.1e-40 Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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