Lsi10G009170 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATCCGATTTTGTTATTTAGGACCAAAGAAATTCCAAGAGGGAAGAGCAGAGAAGGAAGGCTGAGTCCAATCTCACAGAAATGCATTTACCTCCGACTCCAATTCTCCTCTGAGCTGAAGAATTTTGATTTCTTCCACAATGTCTTTAGCTCCCCATTATCTGTATTCTTCCCATTCACTTCCCAAATTTTGCCCTCCTAACCATTCCTCTTCCTTCACTCTATGCTCTCAATCCCATCCCAAACTCTTTCCCTCCAATTCTCTCTTTCATCTCGCTTTTTCAACCCCTAATTCCCTTAAACCCTCACCTTTCATCCTTAGAGCATCCGATACAGAATCCAAAAGCGACACTGGACTCGGTGATTCAGATGATGCAAACCAACCTTATGAAGAGTATGAAGTGGAGTTGCTGCAGCCGTATGGTTTGAAATTCGCCAAGGGCCGAGATGGTGGAACTTATATCGACGCCATTGCACCTGGTGGTTTTGCCGACAAAACTGGATTGTTCACCGTTGGGGATAAAGTTATTGCTACTAGGTTATTCTTTACCTACTACTCTCTTTTCTTTTCAGTTCAACCTCTGCTCCCTAAATCTTCCCCACTATGTTCATCAACAAATTCACCTCTATATTTATTTGAATTGTGAAATCAAAACTATAGGATCTGCCTTGCTTCTTCATTTCACACGTGCATTATCTGTACTACTTTCCAGAATGGTGTATGCAGGGTTAATGCATAACATTTGCTTAGTACTCTAAGATTACATCAAACCTTTGGGTTATGGTTGCTATTTTCAAAATTTCTTATGAAACTAAAAGGTTATTTTGACGTTGAAATTATCACAAACTAGAAAGGCTTAAGCTGATAGGTTACAATATTACAAGTAATTCATACCCTTGACGCTAATGTCAAAGTTGAATGATACTTCAAAATTTTCCTCTTGTTGATTTGTGTATTCATCCTAATGGAAGTTAAATGGAGAAAAGAAAAAGAAAAGTTCTAGGCTTCTTAAATCTGCCATGTGTTTATTCCATAGGCTTAAGTGAAGGGTGAATTAGAATGCCGTGTGCTCATAACTTCTGTCTTCTTCTTGTTGTTGCGTGGTGTATTTTTGTTTCCAAAGAAAGTTAAAAGGAGAAAAGAAAAAGAAAAGATATAGTTTTCATGATTTCTACATATCTCCAACAAACATGACTTAGCCTAGTATGAAAAAAATGTGTGAAGAAAAGTCCTAGCAGAAACATTTGCAGCTTTTCTTACATTGGTTAGGATATAATAAACAAAATAGTTACATCAATGCAGTGCAGTATTTGGGACAGAAATATGGCCTGCTGCTGAATACGGAAGGACAATGTACACAATTCGACAAAGAATTGGTCCATTACTCATGAGAATGCAGAAGAGATATGGTTAGTAATCAATCACACTCGACACATGAATAACGAATACCAAATCAAAATGAATGATGACCAGATTTATTATCTTAAATTGGCTGAAAACCTGTATATATCGGAGTTCGCTAATAAACATAATACTCTTAACATCTTCCATGAATTGTTTGTGATTGTTTTTCCAGGAAAAACAGATAGTTTCGGTGAGTTAACGGAAAAGGAGATAATCAGAGCAGAAAGAAACTCAGGCGTAGTCAGTAATAAAGTGAGAGAAATTCAAGTAAGTGAATGTTTTCTAATAGCTAATGATATCCTATTGAAGCAAGTAACAGCTCCGTTCTCTTTCCTCATTTCTGGGAGTTTTTTCCAAGCTTGGCAAGTAGGTATTGTGCAATACTTCACAGTTCGCAGGATGTCACTAGGGACTTATCTGAAAAAATAGGACCTGCAAAAGATTGATCTAGCATTTAAAAAGTCTACTAAATTGTTAACATATTATTGATCTAATTGTTACAGTTGCAAAATGCCTTAAGGTTGAAGGAGCAGAAAGCACGTAGAGAAAATGACCTACGCCAAGGACTGCGTCTGTATAAGTATGTGCTGCATAACCAACCTGTCCTCTCCTCGTATTGTTTACTTTTGAAGTGCAGACACATCAATGCCCCAACCTATCTTTCTTTCTGTTTTTTCCTCTCCAGGAATGCTAAATATGAGGAAGCATTAGAGAAATTCGAATCAGTGTTGGGATCAAAACCAACTTCAGACGAAGCTTCTGTTGCCAGTTACAATGTTGCATGCTGTTATTCCCAACTAAATCAGGTAATGCTTTTGCTTTAACGTAGAATTCTTTGCAACAATAACTAAAATTGCAATCTCATGTTCAGTATGAAACTTCGGCTTAGATTGAGATTGTTGTAGCTTATAAAAATAATAGTTGGCGGCTGTTCATTTAGAAAAATAGTTGTGAAATGAAATAAAAATAGTATTTGACATATTTTCAATTTTAAATAAGAAAAAAACAGTTAGGGTTTAGTAAATGAAAATATTATATTAGCGTAATTTAGTAATAAGAACCAAAGTAGGCTTATTATTTCAAAGTACGCTATGTTTACCGTACTTTCTATAGACACATTTGTCTGTTTACAGTTTCCATCTTCCTGGACAAAATCACACCAAATGGGGATAACTGATTAGTGCCCCTATATAATTTTCGAACAGTTAAAAGCTGGGCTATCAGCACTTGAAGACGCCTTGGAAGCAGGATTTGAAGACTTTAAGGTAACAGTCACTTCAAGTTTTGATATTCAAATAAAATATTACTTGCCCTCGAGAATATATGTGGAAGTTGTGAACATATTACTCGTATGTTTGTCAGAGAGTTCGGACGGATCCTGATCTATCAAACCTAAGGACCTTGGAGGAATTTGAGCCTCTCGTGAAAAGGTTTGACGAATCATTTATCAATGAGAATGCGATCAATGCCATCAAGTCGCTATTCGGCTTCAAAAAATGAAAACCAGATTCTTCTACAGTCATCTTTTATTAAATAATTCACATTCTTGTTGTCACATCTTGTATAAAAGTATTCAGAGCTTCTAGCTTTTAGATCAGTAACAAAAGAATTTCAATGGAATTTGTTCCCATAAAAATCTTTATTTATGCATATTAGTGTTATACACAATAAACCTATGTTGAGGAAACCTGCTTATGTTCAATTAATTCAGAGATGGTCAGTGTGGAAGCTGAAACTTGATTCCAAGTTCAAGTTATAAAAGTTATTGTTAAACTGCAGCAACTAAAAGAGATTCTGGGGGTGCAAG ATCCGATTTTGTTATTTAGGACCAAAGAAATTCCAAGAGGGAAGAGCAGAGAAGGAAGGCTGAGTCCAATCTCACAGAAATGCATTTACCTCCGACTCCAATTCTCCTCTGAGCTGAAGAATTTTGATTTCTTCCACAATGTCTTTAGCTCCCCATTATCTGTATTCTTCCCATTCACTTCCCAAATTTTGCCCTCCTAACCATTCCTCTTCCTTCACTCTATGCTCTCAATCCCATCCCAAACTCTTTCCCTCCAATTCTCTCTTTCATCTCGCTTTTTCAACCCCTAATTCCCTTAAACCCTCACCTTTCATCCTTAGAGCATCCGATACAGAATCCAAAAGCGACACTGGACTCGGTGATTCAGATGATGCAAACCAACCTTATGAAGAGTATGAAGTGGAGTTGCTGCAGCCGTATGGTTTGAAATTCGCCAAGGGCCGAGATGGTGGAACTTATATCGACGCCATTGCACCTGGTGGTTTTGCCGACAAAACTGGATTGTTCACCGTTGGGGATAAAGTTATTGCTACTAGTGCAGTATTTGGGACAGAAATATGGCCTGCTGCTGAATACGGAAGGACAATGTACACAATTCGACAAAGAATTGGTCCATTACTCATGAGAATGCAGAAGAGATATGGAAAAACAGATAGTTTCGGTGAGTTAACGGAAAAGGAGATAATCAGAGCAGAAAGAAACTCAGGCGTAGTCAGTAATAAAGTGAGAGAAATTCAATTGCAAAATGCCTTAAGGTTGAAGGAGCAGAAAGCACGTAGAGAAAATGACCTACGCCAAGGACTGCGTCTGTATAAGAATGCTAAATATGAGGAAGCATTAGAGAAATTCGAATCAGTGTTGGGATCAAAACCAACTTCAGACGAAGCTTCTGTTGCCAGTTACAATGTTGCATGCTGTTATTCCCAACTAAATCAGTTAAAAGCTGGGCTATCAGCACTTGAAGACGCCTTGGAAGCAGGATTTGAAGACTTTAAGAGAGTTCGGACGGATCCTGATCTATCAAACCTAAGGACCTTGGAGGAATTTGAGCCTCTCGTGAAAAGGTTTGACGAATCATTTATCAATGAGAATGCGATCAATGCCATCAAGTCGCTATTCGGCTTCAAAAAATGAAAACCAGATTCTTCTACAGTCATCTTTTATTAAATAATTCACATTCTTGTTGTCACATCTTGTATAAAAGTATTCAGAGCTTCTAGCTTTTAGATCAGTAACAAAAGAATTTCAATGGAATTTGTTCCCATAAAAATCTTTATTTATGCATATTAGTGTTATACACAATAAACCTATGTTGAGGAAACCTGCTTATGTTCAATTAATTCAGAGATGGTCAGTGTGGAAGCTGAAACTTGATTCCAAGTTCAAGTTATAAAAGTTATTGTTAAACTGCAGCAACTAAAAGAGATTCTGGGGGTGCAAG ATGTCTTTAGCTCCCCATTATCTGTATTCTTCCCATTCACTTCCCAAATTTTGCCCTCCTAACCATTCCTCTTCCTTCACTCTATGCTCTCAATCCCATCCCAAACTCTTTCCCTCCAATTCTCTCTTTCATCTCGCTTTTTCAACCCCTAATTCCCTTAAACCCTCACCTTTCATCCTTAGAGCATCCGATACAGAATCCAAAAGCGACACTGGACTCGGTGATTCAGATGATGCAAACCAACCTTATGAAGAGTATGAAGTGGAGTTGCTGCAGCCGTATGGTTTGAAATTCGCCAAGGGCCGAGATGGTGGAACTTATATCGACGCCATTGCACCTGGTGGTTTTGCCGACAAAACTGGATTGTTCACCGTTGGGGATAAAGTTATTGCTACTAGTGCAGTATTTGGGACAGAAATATGGCCTGCTGCTGAATACGGAAGGACAATGTACACAATTCGACAAAGAATTGGTCCATTACTCATGAGAATGCAGAAGAGATATGGAAAAACAGATAGTTTCGGTGAGTTAACGGAAAAGGAGATAATCAGAGCAGAAAGAAACTCAGGCGTAGTCAGTAATAAAGTGAGAGAAATTCAATTGCAAAATGCCTTAAGGTTGAAGGAGCAGAAAGCACGTAGAGAAAATGACCTACGCCAAGGACTGCGTCTGTATAAGAATGCTAAATATGAGGAAGCATTAGAGAAATTCGAATCAGTGTTGGGATCAAAACCAACTTCAGACGAAGCTTCTGTTGCCAGTTACAATGTTGCATGCTGTTATTCCCAACTAAATCAGTTAAAAGCTGGGCTATCAGCACTTGAAGACGCCTTGGAAGCAGGATTTGAAGACTTTAAGAGAGTTCGGACGGATCCTGATCTATCAAACCTAAGGACCTTGGAGGAATTTGAGCCTCTCGTGAAAAGGTTTGACGAATCATTTATCAATGAGAATGCGATCAATGCCATCAAGTCGCTATTCGGCTTCAAAAAATGA MSLAPHYLYSSHSLPKFCPPNHSSSFTLCSQSHPKLFPSNSLFHLAFSTPNSLKPSPFILRASDTESKSDTGLGDSDDANQPYEEYEVELLQPYGLKFAKGRDGGTYIDAIAPGGFADKTGLFTVGDKVIATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMRMQKRYGKTDSFGELTEKEIIRAERNSGVVSNKVREIQLQNALRLKEQKARRENDLRQGLRLYKNAKYEEALEKFESVLGSKPTSDEASVASYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKSLFGFKK
BLAST of Lsi10G009170 vs. Swiss-Prot
Match: LPA1_ARATH (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 PE=1 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 4.5e-07 Identity = 31/86 (36.05%), Postives = 46/86 (53.49%), Query Frame = 1
BLAST of Lsi10G009170 vs. TrEMBL
Match: A0A0A0KWR6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268040 PE=4 SV=1) HSP 1 Score: 566.6 bits (1459), Expect = 2.0e-158 Identity = 304/337 (90.21%), Postives = 312/337 (92.58%), Query Frame = 1
BLAST of Lsi10G009170 vs. TrEMBL
Match: B9SBN8_RICCO (Protein binding protein, putative OS=Ricinus communis GN=RCOM_0342940 PE=4 SV=1) HSP 1 Score: 451.8 bits (1161), Expect = 7.1e-124 Identity = 247/339 (72.86%), Postives = 282/339 (83.19%), Query Frame = 1
BLAST of Lsi10G009170 vs. TrEMBL
Match: A0A067K3A5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16187 PE=4 SV=1) HSP 1 Score: 445.3 bits (1144), Expect = 6.6e-122 Identity = 243/332 (73.19%), Postives = 274/332 (82.53%), Query Frame = 1
BLAST of Lsi10G009170 vs. TrEMBL
Match: B9GXY1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s20890g PE=4 SV=1) HSP 1 Score: 437.2 bits (1123), Expect = 1.8e-119 Identity = 243/352 (69.03%), Postives = 275/352 (78.12%), Query Frame = 1
BLAST of Lsi10G009170 vs. TrEMBL
Match: W9SBD7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019127 PE=4 SV=1) HSP 1 Score: 433.0 bits (1112), Expect = 3.4e-118 Identity = 241/347 (69.45%), Postives = 275/347 (79.25%), Query Frame = 1
BLAST of Lsi10G009170 vs. TAIR10
Match: AT1G55480.1 (AT1G55480.1 protein containing PDZ domain, a K-box domain, and a TPR region) HSP 1 Score: 406.4 bits (1043), Expect = 1.7e-113 Identity = 220/336 (65.48%), Postives = 263/336 (78.27%), Query Frame = 1
BLAST of Lsi10G009170 vs. TAIR10
Match: AT1G02910.1 (AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein) HSP 1 Score: 57.0 bits (136), Expect = 2.6e-08 Identity = 31/86 (36.05%), Postives = 46/86 (53.49%), Query Frame = 1
BLAST of Lsi10G009170 vs. TAIR10
Match: AT5G17170.1 (AT5G17170.1 rubredoxin family protein) HSP 1 Score: 53.9 bits (128), Expect = 2.2e-07 Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 1
BLAST of Lsi10G009170 vs. NCBI nr
Match: gi|449463844|ref|XP_004149641.1| (PREDICTED: uncharacterized protein LOC101217229 [Cucumis sativus]) HSP 1 Score: 566.6 bits (1459), Expect = 2.8e-158 Identity = 304/337 (90.21%), Postives = 312/337 (92.58%), Query Frame = 1
BLAST of Lsi10G009170 vs. NCBI nr
Match: gi|659097949|ref|XP_008449894.1| (PREDICTED: uncharacterized protein LOC103491636 [Cucumis melo]) HSP 1 Score: 563.5 bits (1451), Expect = 2.4e-157 Identity = 302/335 (90.15%), Postives = 310/335 (92.54%), Query Frame = 1
BLAST of Lsi10G009170 vs. NCBI nr
Match: gi|255564826|ref|XP_002523407.1| (PREDICTED: uncharacterized protein LOC8282165 [Ricinus communis]) HSP 1 Score: 451.8 bits (1161), Expect = 1.0e-123 Identity = 247/339 (72.86%), Postives = 282/339 (83.19%), Query Frame = 1
BLAST of Lsi10G009170 vs. NCBI nr
Match: gi|802659250|ref|XP_012080818.1| (PREDICTED: uncharacterized protein LOC105640994 [Jatropha curcas]) HSP 1 Score: 445.3 bits (1144), Expect = 9.5e-122 Identity = 243/332 (73.19%), Postives = 274/332 (82.53%), Query Frame = 1
BLAST of Lsi10G009170 vs. NCBI nr
Match: gi|470117615|ref|XP_004294949.1| (PREDICTED: uncharacterized protein LOC101313964 [Fragaria vesca subsp. vesca]) HSP 1 Score: 443.0 bits (1138), Expect = 4.7e-121 Identity = 235/334 (70.36%), Postives = 272/334 (81.44%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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