Lsi11G014610 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G014610
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_60
Location	chr11 : 23184203 .. 23184587 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCGCAGCAAAGTGGAACTTGACGATTATGAAACAGCATTGCCAATGCCCGCAAGGCAAAAGCTCGTATTTCCCTTACCTCCACCGGTTTGCACTGCTCATAATTTAGCCGAATCCGGGAGAGAAGATGAGCGAAGCAAGTCCTGTGAGAAGGAGAGAAAGTCCATGGGGGATGCCGGAGGGAGAGGATCGGCAACCTAAGCCTCACAGATGCAATGACAGAGTTGAGGATGTTATCCAAGTAAACTTTCACTTCTTTAATTTTTCTCTGTTTATCAGCATCGTTCGCGTTCTTTTCCACATTATTACATCTACTCTTCTTCTTGTTTATTCTGATCTCAATTTGTTTCTAATGGACGGATTTGAAAAATTGATATCGAAATGA

mRNA sequence

GTCCGCAGCAAAGTGGAACTTGACGATTATGAAACAGCATTGCCAATGCCCGCAAGGCAAAAGCTCGTATTTCCCTTACCTCCACCGCCGAATCCGGGAGAGAAGATGAGCGAAGCAAGTCCTGTGAGAAGGAGAGAAAGTCCATGGGGGATGCCGGAGGGAGAGGATCGGCAACCTAAGCCTCACAGATGCAATGACAGAGTTGAGGATGTTATCCAAGTAAACTTTCACTTCTTTAATTTTTCTCTGTTTATCAGCATCGTTCGCGTTCTTTTCCACATTATTACATCTACTCTTCTTCTTGTTTATTCTGATCTCAATTTGTTTCTAATGGACGGATTTGAAAAATTGATATCGAAATGA

Coding sequence (CDS)

GTCCGCAGCAAAGTGGAACTTGACGATTATGAAACAGCATTGCCAATGCCCGCAAGGCAAAAGCTCGTATTTCCCTTACCTCCACCGCCGAATCCGGGAGAGAAGATGAGCGAAGCAAGTCCTGTGAGAAGGAGAGAAAGTCCATGGGGGATGCCGGAGGGAGAGGATCGGCAACCTAAGCCTCACAGATGCAATGACAGAGTTGAGGATGTTATCCAAGTAAACTTTCACTTCTTTAATTTTTCTCTGTTTATCAGCATCGTTCGCGTTCTTTTCCACATTATTACATCTACTCTTCTTCTTGTTTATTCTGATCTCAATTTGTTTCTAATGGACGGATTTGAAAAATTGATATCGAAATGA

Protein sequence

VRSKVELDDYETALPMPARQKLVFPLPPPPNPGEKMSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNFHFFNFSLFISIVRVLFHIITSTLLLVYSDLNLFLMDGFEKLISK

Homology

[Close]

BLAST of Lsi11G014610 vs. TrEMBL
Match: A0A0A0K6V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044220 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEG+DRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGDDRQPKAHRCNDRAEDVIQACF 41

[Close]

BLAST of Lsi11G014610 vs. TrEMBL
Match: A0A0Q3H2Q8_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_1g32821 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.2e-10
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1


Query: 33 GEKMSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          G +MSE  PV RRESPWG+PEG+ RQPK HRCNDRVEDV+Q  F
Sbjct: 45 GGRMSEERPVPRRESPWGLPEGDKRQPKAHRCNDRVEDVVQACF 88

[Close]

BLAST of Lsi11G014610 vs. TrEMBL
Match: A0A0J8BCW2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g123640 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.4e-10
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1


Query: 30 PNPGEKMSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          P+P   +S  SPVRRRESPWG+PEG+ R+PKPHRCNDR EDVIQ  F
Sbjct: 7  PSPSASVSP-SPVRRRESPWGLPEGDHREPKPHRCNDRAEDVIQACF 52

[Close]

BLAST of Lsi11G014610 vs. TrEMBL
Match: A0A0Q3L1P0_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_1g32821 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 35 KMSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          +MSE  PV RRESPWG+PEG+ RQPK HRCNDRVEDV+Q  F
Sbjct: 52 RMSEERPVPRRESPWGLPEGDKRQPKAHRCNDRVEDVVQACF 93

[Close]

BLAST of Lsi11G014610 vs. TrEMBL
Match: A0A061EY29_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025380 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 1


Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV RRESPWG+PEGE RQPK HRCNDR EDVIQ  F
Sbjct: 1  MSETRPVPRRESPWGLPEGEHRQPKAHRCNDRAEDVIQACF 41

[Close]

BLAST of Lsi11G014610 vs. TAIR10
Match: AT1G05205.1 (AT1G05205.1 unknown protein)

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-11
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 1


Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV RRESPWG+PEG  R+PK HRCNDRVEDVIQ  F
Sbjct: 1  MSETRPVPRRESPWGLPEGH-REPKAHRCNDRVEDVIQALF 40

[Close]

BLAST of Lsi11G014610 vs. NCBI nr
Match: gi|659110822|ref|XP_008455429.1| (PREDICTED: uncharacterized protein LOC103495588 isoform X4 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-11
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

[Close]

BLAST of Lsi11G014610 vs. NCBI nr
Match: gi|659110820|ref|XP_008455428.1| (PREDICTED: uncharacterized protein LOC103495588 isoform X3 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-11
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

[Close]

BLAST of Lsi11G014610 vs. NCBI nr
Match: gi|659110816|ref|XP_008455426.1| (PREDICTED: uncharacterized protein LOC103495588 isoform X1 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-11
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

[Close]

BLAST of Lsi11G014610 vs. NCBI nr
Match: gi|659110818|ref|XP_008455427.1| (PREDICTED: uncharacterized protein LOC103495588 isoform X2 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-11
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

[Close]

BLAST of Lsi11G014610 vs. NCBI nr
Match: gi|659110824|ref|XP_008455430.1| (PREDICTED: uncharacterized protein LOC103495588 isoform X5 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-11
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

The following BLAST results are available for this feature:

BLAST of Lsi11G014610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi11G014610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6V3_CUCSA	1.1e-10	80.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044220 PE=4 SV=1	[more]
A0A0Q3H2Q8_BRADI	4.2e-10	72.73	Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_1g32821 PE=4 SV=1	[more]
A0A0J8BCW2_BETVU	9.4e-10	70.21	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g123640 PE=4 S...	[more]
A0A0Q3L1P0_BRADI	1.6e-09	73.81	Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_1g32821 PE=4 SV=1	[more]
A0A061EY29_THECC	1.6e-09	78.05	Uncharacterized protein OS=Theobroma cacao GN=TCM_025380 PE=4 SV=1	[more]

BLAST of Lsi11G014610 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05205.1	4.4e-11	75.61	unknown protein	[more]

BLAST of Lsi11G014610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110822\|ref\|XP_008455429.1\|	7.1e-11	82.93	PREDICTED: uncharacterized protein LOC103495588 isoform X4 [Cucumis melo]	[more]
gi\|659110820\|ref\|XP_008455428.1\|	7.1e-11	82.93	PREDICTED: uncharacterized protein LOC103495588 isoform X3 [Cucumis melo]	[more]
gi\|659110816\|ref\|XP_008455426.1\|	7.1e-11	82.93	PREDICTED: uncharacterized protein LOC103495588 isoform X1 [Cucumis melo]	[more]
gi\|659110818\|ref\|XP_008455427.1\|	7.1e-11	82.93	PREDICTED: uncharacterized protein LOC103495588 isoform X2 [Cucumis melo]	[more]
gi\|659110824\|ref\|XP_008455430.1\|	7.1e-11	82.93	PREDICTED: uncharacterized protein LOC103495588 isoform X5 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G014610.1	Lsi11G014610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36706	FAMILY NOT NAMED	coord: 24..74 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G014610	Cla007675	Watermelon (97103) v1	lsiwmB100

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G014610	Bottle gourd (USVL1VR-Ls)	lsilsiB022
Lsi11G014610	Bottle gourd (USVL1VR-Ls)	lsilsiB048
Lsi11G014610	Cucumber (Gy14) v1	cgylsiB021
Lsi11G014610	Cucumber (Gy14) v1	cgylsiB072
Lsi11G014610	Cucumber (Gy14) v1	cgylsiB237
Lsi11G014610	Cucurbita maxima (Rimu)	cmalsiB091
Lsi11G014610	Cucurbita maxima (Rimu)	cmalsiB198
Lsi11G014610	Cucurbita maxima (Rimu)	cmalsiB472
Lsi11G014610	Cucurbita maxima (Rimu)	cmalsiB513
Lsi11G014610	Cucurbita maxima (Rimu)	cmalsiB561
Lsi11G014610	Cucurbita maxima (Rimu)	cmalsiB785
Lsi11G014610	Cucurbita moschata (Rifu)	cmolsiB080
Lsi11G014610	Cucurbita moschata (Rifu)	cmolsiB188
Lsi11G014610	Cucurbita moschata (Rifu)	cmolsiB457
Lsi11G014610	Cucurbita moschata (Rifu)	cmolsiB499
Lsi11G014610	Cucurbita moschata (Rifu)	cmolsiB544
Lsi11G014610	Cucurbita moschata (Rifu)	cmolsiB581
Lsi11G014610	Cucurbita pepo (Zucchini)	cpelsiB199
Lsi11G014610	Cucurbita pepo (Zucchini)	cpelsiB233
Lsi11G014610	Cucurbita pepo (Zucchini)	cpelsiB526
Lsi11G014610	Cucurbita pepo (Zucchini)	cpelsiB606
Lsi11G014610	Wild cucumber (PI 183967)	cpilsiB011
Lsi11G014610	Wild cucumber (PI 183967)	cpilsiB099
Lsi11G014610	Wild cucumber (PI 183967)	cpilsiB430
Lsi11G014610	Wild cucumber (PI 183967)	cpilsiB505
Lsi11G014610	Cucumber (Chinese Long) v2	culsiB099
Lsi11G014610	Cucumber (Chinese Long) v2	culsiB494
Lsi11G014610	Melon (DHL92) v3.5.1	lsimeB088
Lsi11G014610	Melon (DHL92) v3.5.1	lsimeB090
Lsi11G014610	Melon (DHL92) v3.5.1	lsimeB095
Lsi11G014610	Melon (DHL92) v3.5.1	lsimeB119
Lsi11G014610	Watermelon (Charleston Gray)	lsiwcgB104
Lsi11G014610	Watermelon (Charleston Gray)	lsiwcgB089
Lsi11G014610	Watermelon (Charleston Gray)	lsiwcgB097
Lsi11G014610	Watermelon (Charleston Gray)	lsiwcgB100
Lsi11G014610	Watermelon (97103) v1	lsiwmB093
Lsi11G014610	Watermelon (97103) v1	lsiwmB099
Lsi11G014610	Watermelon (97103) v1	lsiwmB102
Lsi11G014610	Cucumber (Gy14) v2	cgyblsiB092
Lsi11G014610	Cucumber (Gy14) v2	cgyblsiB391
Lsi11G014610	Cucumber (Gy14) v2	cgyblsiB462
Lsi11G014610	Melon (DHL92) v3.6.1	lsimedB095
Lsi11G014610	Melon (DHL92) v3.6.1	lsimedB101
Lsi11G014610	Melon (DHL92) v3.6.1	lsimedB126
Lsi11G014610	Silver-seed gourd	carlsiB028
Lsi11G014610	Silver-seed gourd	carlsiB307
Lsi11G014610	Silver-seed gourd	carlsiB584
Lsi11G014610	Silver-seed gourd	carlsiB659
Lsi11G014610	Silver-seed gourd	carlsiB795
Lsi11G014610	Cucumber (Chinese Long) v3	cuclsiB110
Lsi11G014610	Cucumber (Chinese Long) v3	cuclsiB453
Lsi11G014610	Cucumber (Chinese Long) v3	cuclsiB529
Lsi11G014610	Watermelon (97103) v2	lsiwmbB073
Lsi11G014610	Watermelon (97103) v2	lsiwmbB086
Lsi11G014610	Watermelon (97103) v2	lsiwmbB089
Lsi11G014610	Wax gourd	lsiwgoB131
Lsi11G014610	Wax gourd	lsiwgoB118
Lsi11G014610	Wax gourd	lsiwgoB127
Lsi11G014610	Wax gourd	lsiwgoB130