Lsi11G014610.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G014610.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_60
Location	chr11 : 23184203 .. 23184587 (-)
Sequence length	363

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCGCAGCAAAGTGGAACTTGACGATTATGAAACAGCATTGCCAATGCCCGCAAGGCAAAAGCTCGTATTTCCCTTACCTCCACCGGTTTGCACTGCTCATAATTTAGCCGAATCCGGGAGAGAAGATGAGCGAAGCAAGTCCTGTGAGAAGGAGAGAAAGTCCATGGGGGATGCCGGAGGGAGAGGATCGGCAACCTAAGCCTCACAGATGCAATGACAGAGTTGAGGATGTTATCCAAGTAAACTTTCACTTCTTTAATTTTTCTCTGTTTATCAGCATCGTTCGCGTTCTTTTCCACATTATTACATCTACTCTTCTTCTTGTTTATTCTGATCTCAATTTGTTTCTAATGGACGGATTTGAAAAATTGATATCGAAATGA

mRNA sequence

GTCCGCAGCAAAGTGGAACTTGACGATTATGAAACAGCATTGCCAATGCCCGCAAGGCAAAAGCTCGTATTTCCCTTACCTCCACCGCCGAATCCGGGAGAGAAGATGAGCGAAGCAAGTCCTGTGAGAAGGAGAGAAAGTCCATGGGGGATGCCGGAGGGAGAGGATCGGCAACCTAAGCCTCACAGATGCAATGACAGAGTTGAGGATGTTATCCAAGTAAACTTTCACTTCTTTAATTTTTCTCTGTTTATCAGCATCGTTCGCGTTCTTTTCCACATTATTACATCTACTCTTCTTCTTGTTTATTCTGATCTCAATTTGTTTCTAATGGACGGATTTGAAAAATTGATATCGAAATGA

Coding sequence (CDS)

GTCCGCAGCAAAGTGGAACTTGACGATTATGAAACAGCATTGCCAATGCCCGCAAGGCAAAAGCTCGTATTTCCCTTACCTCCACCGCCGAATCCGGGAGAGAAGATGAGCGAAGCAAGTCCTGTGAGAAGGAGAGAAAGTCCATGGGGGATGCCGGAGGGAGAGGATCGGCAACCTAAGCCTCACAGATGCAATGACAGAGTTGAGGATGTTATCCAAGTAAACTTTCACTTCTTTAATTTTTCTCTGTTTATCAGCATCGTTCGCGTTCTTTTCCACATTATTACATCTACTCTTCTTCTTGTTTATTCTGATCTCAATTTGTTTCTAATGGACGGATTTGAAAAATTGATATCGAAATGA

Protein sequence

VRSKVELDDYETALPMPARQKLVFPLPPPPNPGEKMSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNFHFFNFSLFISIVRVLFHIITSTLLLVYSDLNLFLMDGFEKLISK

Homology

[Close]

BLAST of Lsi11G014610.1 vs. TrEMBL
Match: A0A0A0K6V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044220 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEG+DRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGDDRQPKAHRCNDRAEDVIQACF 41

[Close]

BLAST of Lsi11G014610.1 vs. TrEMBL
Match: A0A0Q3H2Q8_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_1g32821 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.2e-10
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1


Query: 33 GEKMSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          G +MSE  PV RRESPWG+PEG+ RQPK HRCNDRVEDV+Q  F
Sbjct: 45 GGRMSEERPVPRRESPWGLPEGDKRQPKAHRCNDRVEDVVQACF 88

[Close]

BLAST of Lsi11G014610.1 vs. TrEMBL
Match: A0A0J8BCW2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g123640 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.4e-10
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1


Query: 30 PNPGEKMSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          P+P   +S  SPVRRRESPWG+PEG+ R+PKPHRCNDR EDVIQ  F
Sbjct: 7  PSPSASVSP-SPVRRRESPWGLPEGDHREPKPHRCNDRAEDVIQACF 52

[Close]

BLAST of Lsi11G014610.1 vs. TrEMBL
Match: A0A0Q3L1P0_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_1g32821 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 35 KMSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          +MSE  PV RRESPWG+PEG+ RQPK HRCNDRVEDV+Q  F
Sbjct: 52 RMSEERPVPRRESPWGLPEGDKRQPKAHRCNDRVEDVVQACF 93

[Close]

BLAST of Lsi11G014610.1 vs. TrEMBL
Match: A0A061EY29_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025380 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 1


Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV RRESPWG+PEGE RQPK HRCNDR EDVIQ  F
Sbjct: 1  MSETRPVPRRESPWGLPEGEHRQPKAHRCNDRAEDVIQACF 41

[Close]

BLAST of Lsi11G014610.1 vs. TAIR10
Match: AT1G05205.1 (AT1G05205.1 unknown protein)

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-11
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 1


Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV RRESPWG+PEG  R+PK HRCNDRVEDVIQ  F
Sbjct: 1  MSETRPVPRRESPWGLPEGH-REPKAHRCNDRVEDVIQALF 40

[Close]

BLAST of Lsi11G014610.1 vs. NCBI nr
Match: gi|659110822|ref|XP_008455429.1| (PREDICTED: uncharacterized protein LOC103495588 isoform X4 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-11
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

[Close]

BLAST of Lsi11G014610.1 vs. NCBI nr
Match: gi|659110820|ref|XP_008455428.1| (PREDICTED: uncharacterized protein LOC103495588 isoform X3 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-11
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

[Close]

BLAST of Lsi11G014610.1 vs. NCBI nr
Match: gi|659110816|ref|XP_008455426.1| (PREDICTED: uncharacterized protein LOC103495588 isoform X1 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-11
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

[Close]

BLAST of Lsi11G014610.1 vs. NCBI nr
Match: gi|659110818|ref|XP_008455427.1| (PREDICTED: uncharacterized protein LOC103495588 isoform X2 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-11
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

[Close]

BLAST of Lsi11G014610.1 vs. NCBI nr
Match: gi|659110824|ref|XP_008455430.1| (PREDICTED: uncharacterized protein LOC103495588 isoform X5 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-11
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

The following BLAST results are available for this feature:

BLAST of Lsi11G014610.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi11G014610.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6V3_CUCSA	1.1e-10	80.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044220 PE=4 SV=1	[more]
A0A0Q3H2Q8_BRADI	4.2e-10	72.73	Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_1g32821 PE=4 SV=1	[more]
A0A0J8BCW2_BETVU	9.4e-10	70.21	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g123640 PE=4 S...	[more]
A0A0Q3L1P0_BRADI	1.6e-09	73.81	Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_1g32821 PE=4 SV=1	[more]
A0A061EY29_THECC	1.6e-09	78.05	Uncharacterized protein OS=Theobroma cacao GN=TCM_025380 PE=4 SV=1	[more]

BLAST of Lsi11G014610.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05205.1	4.4e-11	75.61	unknown protein	[more]

BLAST of Lsi11G014610.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110822\|ref\|XP_008455429.1\|	7.1e-11	82.93	PREDICTED: uncharacterized protein LOC103495588 isoform X4 [Cucumis melo]	[more]
gi\|659110820\|ref\|XP_008455428.1\|	7.1e-11	82.93	PREDICTED: uncharacterized protein LOC103495588 isoform X3 [Cucumis melo]	[more]
gi\|659110816\|ref\|XP_008455426.1\|	7.1e-11	82.93	PREDICTED: uncharacterized protein LOC103495588 isoform X1 [Cucumis melo]	[more]
gi\|659110818\|ref\|XP_008455427.1\|	7.1e-11	82.93	PREDICTED: uncharacterized protein LOC103495588 isoform X2 [Cucumis melo]	[more]
gi\|659110824\|ref\|XP_008455430.1\|	7.1e-11	82.93	PREDICTED: uncharacterized protein LOC103495588 isoform X5 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi11G014610	Lsi11G014610	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G014610.1.CDS.2	Lsi11G014610.1.CDS.2	CDS
Lsi11G014610.1.CDS.1	Lsi11G014610.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi11G014610.1	Lsi11G014610.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36706	FAMILY NOT NAMED	coord: 24..74 score: 4.3