Lsi11G014610 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi11G014610
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_60
Locationchr11 : 23184203 .. 23184587 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCCGCAGCAAAGTGGAACTTGACGATTATGAAACAGCATTGCCAATGCCCGCAAGGCAAAAGCTCGTATTTCCCTTACCTCCACCGGTTTGCACTGCTCATAATTTAGCCGAATCCGGGAGAGAAGATGAGCGAAGCAAGTCCTGTGAGAAGGAGAGAAAGTCCATGGGGGATGCCGGAGGGAGAGGATCGGCAACCTAAGCCTCACAGATGCAATGACAGAGTTGAGGATGTTATCCAAGTAAACTTTCACTTCTTTAATTTTTCTCTGTTTATCAGCATCGTTCGCGTTCTTTTCCACATTATTACATCTACTCTTCTTCTTGTTTATTCTGATCTCAATTTGTTTCTAATGGACGGATTTGAAAAATTGATATCGAAATGA

mRNA sequence

GTCCGCAGCAAAGTGGAACTTGACGATTATGAAACAGCATTGCCAATGCCCGCAAGGCAAAAGCTCGTATTTCCCTTACCTCCACCGCCGAATCCGGGAGAGAAGATGAGCGAAGCAAGTCCTGTGAGAAGGAGAGAAAGTCCATGGGGGATGCCGGAGGGAGAGGATCGGCAACCTAAGCCTCACAGATGCAATGACAGAGTTGAGGATGTTATCCAAGTAAACTTTCACTTCTTTAATTTTTCTCTGTTTATCAGCATCGTTCGCGTTCTTTTCCACATTATTACATCTACTCTTCTTCTTGTTTATTCTGATCTCAATTTGTTTCTAATGGACGGATTTGAAAAATTGATATCGAAATGA

Coding sequence (CDS)

GTCCGCAGCAAAGTGGAACTTGACGATTATGAAACAGCATTGCCAATGCCCGCAAGGCAAAAGCTCGTATTTCCCTTACCTCCACCGCCGAATCCGGGAGAGAAGATGAGCGAAGCAAGTCCTGTGAGAAGGAGAGAAAGTCCATGGGGGATGCCGGAGGGAGAGGATCGGCAACCTAAGCCTCACAGATGCAATGACAGAGTTGAGGATGTTATCCAAGTAAACTTTCACTTCTTTAATTTTTCTCTGTTTATCAGCATCGTTCGCGTTCTTTTCCACATTATTACATCTACTCTTCTTCTTGTTTATTCTGATCTCAATTTGTTTCTAATGGACGGATTTGAAAAATTGATATCGAAATGA

Protein sequence

VRSKVELDDYETALPMPARQKLVFPLPPPPNPGEKMSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNFHFFNFSLFISIVRVLFHIITSTLLLVYSDLNLFLMDGFEKLISK
Homology
[Close]
BLAST of Lsi11G014610 vs. TrEMBL
Match: A0A0A0K6V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044220 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 1 

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEG+DRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGDDRQPKAHRCNDRAEDVIQACF 41

[Close]
BLAST of Lsi11G014610 vs. TrEMBL
Match: A0A0Q3H2Q8_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_1g32821 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.2e-10
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1 

Query: 33 GEKMSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          G +MSE  PV RRESPWG+PEG+ RQPK HRCNDRVEDV+Q  F
Sbjct: 45 GGRMSEERPVPRRESPWGLPEGDKRQPKAHRCNDRVEDVVQACF 88

[Close]
BLAST of Lsi11G014610 vs. TrEMBL
Match: A0A0J8BCW2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g123640 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.4e-10
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1 

Query: 30 PNPGEKMSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          P+P   +S  SPVRRRESPWG+PEG+ R+PKPHRCNDR EDVIQ  F
Sbjct: 7  PSPSASVSP-SPVRRRESPWGLPEGDHREPKPHRCNDRAEDVIQACF 52

[Close]
BLAST of Lsi11G014610 vs. TrEMBL
Match: A0A0Q3L1P0_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_1g32821 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 

Query: 35 KMSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          +MSE  PV RRESPWG+PEG+ RQPK HRCNDRVEDV+Q  F
Sbjct: 52 RMSEERPVPRRESPWGLPEGDKRQPKAHRCNDRVEDVVQACF 93

[Close]
BLAST of Lsi11G014610 vs. TrEMBL
Match: A0A061EY29_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025380 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 1 

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV RRESPWG+PEGE RQPK HRCNDR EDVIQ  F
Sbjct: 1  MSETRPVPRRESPWGLPEGEHRQPKAHRCNDRAEDVIQACF 41

[Close]
BLAST of Lsi11G014610 vs. TAIR10
Match: AT1G05205.1 (AT1G05205.1 unknown protein)

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-11
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 1 

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV RRESPWG+PEG  R+PK HRCNDRVEDVIQ  F
Sbjct: 1  MSETRPVPRRESPWGLPEGH-REPKAHRCNDRVEDVIQALF 40

[Close]
BLAST of Lsi11G014610 vs. NCBI nr
Match: gi|659110822|ref|XP_008455429.1| (PREDICTED: uncharacterized protein LOC103495588 isoform X4 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-11
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1 

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

[Close]
BLAST of Lsi11G014610 vs. NCBI nr
Match: gi|659110820|ref|XP_008455428.1| (PREDICTED: uncharacterized protein LOC103495588 isoform X3 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-11
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1 

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

[Close]
BLAST of Lsi11G014610 vs. NCBI nr
Match: gi|659110816|ref|XP_008455426.1| (PREDICTED: uncharacterized protein LOC103495588 isoform X1 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-11
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1 

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

[Close]
BLAST of Lsi11G014610 vs. NCBI nr
Match: gi|659110818|ref|XP_008455427.1| (PREDICTED: uncharacterized protein LOC103495588 isoform X2 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-11
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1 

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

[Close]
BLAST of Lsi11G014610 vs. NCBI nr
Match: gi|659110824|ref|XP_008455430.1| (PREDICTED: uncharacterized protein LOC103495588 isoform X5 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-11
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1 

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

The following BLAST results are available for this feature:
BLAST of Lsi11G014610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi11G014610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6V3_CUCSA1.1e-1080.49Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044220 PE=4 SV=1[more]
A0A0Q3H2Q8_BRADI4.2e-1072.73Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_1g32821 PE=4 SV=1[more]
A0A0J8BCW2_BETVU9.4e-1070.21Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g123640 PE=4 S... [more]
A0A0Q3L1P0_BRADI1.6e-0973.81Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_1g32821 PE=4 SV=1[more]
A0A061EY29_THECC1.6e-0978.05Uncharacterized protein OS=Theobroma cacao GN=TCM_025380 PE=4 SV=1[more]
BLAST of Lsi11G014610 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G05205.14.4e-1175.61 unknown protein[more]
BLAST of Lsi11G014610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110822|ref|XP_008455429.1|7.1e-1182.93PREDICTED: uncharacterized protein LOC103495588 isoform X4 [Cucumis melo][more]
gi|659110820|ref|XP_008455428.1|7.1e-1182.93PREDICTED: uncharacterized protein LOC103495588 isoform X3 [Cucumis melo][more]
gi|659110816|ref|XP_008455426.1|7.1e-1182.93PREDICTED: uncharacterized protein LOC103495588 isoform X1 [Cucumis melo][more]
gi|659110818|ref|XP_008455427.1|7.1e-1182.93PREDICTED: uncharacterized protein LOC103495588 isoform X2 [Cucumis melo][more]
gi|659110824|ref|XP_008455430.1|7.1e-1182.93PREDICTED: uncharacterized protein LOC103495588 isoform X5 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G014610.1Lsi11G014610.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36706FAMILY NOT NAMEDcoord: 24..74
score: 4.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi11G014610Cla007675Watermelon (97103) v1lsiwmB100
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi11G014610Watermelon (97103) v2lsiwmbB073
Lsi11G014610Watermelon (97103) v2lsiwmbB086
Lsi11G014610Watermelon (97103) v2lsiwmbB089
Lsi11G014610Wax gourdlsiwgoB131
Lsi11G014610Wax gourdlsiwgoB118
Lsi11G014610Wax gourdlsiwgoB127
Lsi11G014610Wax gourdlsiwgoB130
Lsi11G014610Bottle gourd (USVL1VR-Ls)lsilsiB022
Lsi11G014610Bottle gourd (USVL1VR-Ls)lsilsiB048
Lsi11G014610Cucumber (Gy14) v1cgylsiB021
Lsi11G014610Cucumber (Gy14) v1cgylsiB072
Lsi11G014610Cucumber (Gy14) v1cgylsiB237
Lsi11G014610Cucurbita maxima (Rimu)cmalsiB091
Lsi11G014610Cucurbita maxima (Rimu)cmalsiB198
Lsi11G014610Cucurbita maxima (Rimu)cmalsiB472
Lsi11G014610Cucurbita maxima (Rimu)cmalsiB513
Lsi11G014610Cucurbita maxima (Rimu)cmalsiB561
Lsi11G014610Cucurbita maxima (Rimu)cmalsiB785
Lsi11G014610Cucurbita moschata (Rifu)cmolsiB080
Lsi11G014610Cucurbita moschata (Rifu)cmolsiB188
Lsi11G014610Cucurbita moschata (Rifu)cmolsiB457
Lsi11G014610Cucurbita moschata (Rifu)cmolsiB499
Lsi11G014610Cucurbita moschata (Rifu)cmolsiB544
Lsi11G014610Cucurbita moschata (Rifu)cmolsiB581
Lsi11G014610Cucurbita pepo (Zucchini)cpelsiB199
Lsi11G014610Cucurbita pepo (Zucchini)cpelsiB233
Lsi11G014610Cucurbita pepo (Zucchini)cpelsiB526
Lsi11G014610Cucurbita pepo (Zucchini)cpelsiB606
Lsi11G014610Wild cucumber (PI 183967)cpilsiB011
Lsi11G014610Wild cucumber (PI 183967)cpilsiB099
Lsi11G014610Wild cucumber (PI 183967)cpilsiB430
Lsi11G014610Wild cucumber (PI 183967)cpilsiB505
Lsi11G014610Cucumber (Chinese Long) v2culsiB099
Lsi11G014610Cucumber (Chinese Long) v2culsiB494
Lsi11G014610Melon (DHL92) v3.5.1lsimeB088
Lsi11G014610Melon (DHL92) v3.5.1lsimeB090
Lsi11G014610Melon (DHL92) v3.5.1lsimeB095
Lsi11G014610Melon (DHL92) v3.5.1lsimeB119
Lsi11G014610Watermelon (Charleston Gray)lsiwcgB104
Lsi11G014610Watermelon (Charleston Gray)lsiwcgB089
Lsi11G014610Watermelon (Charleston Gray)lsiwcgB097
Lsi11G014610Watermelon (Charleston Gray)lsiwcgB100
Lsi11G014610Watermelon (97103) v1lsiwmB093
Lsi11G014610Watermelon (97103) v1lsiwmB099
Lsi11G014610Watermelon (97103) v1lsiwmB102
Lsi11G014610Cucumber (Gy14) v2cgyblsiB092
Lsi11G014610Cucumber (Gy14) v2cgyblsiB391
Lsi11G014610Cucumber (Gy14) v2cgyblsiB462
Lsi11G014610Melon (DHL92) v3.6.1lsimedB095
Lsi11G014610Melon (DHL92) v3.6.1lsimedB101
Lsi11G014610Melon (DHL92) v3.6.1lsimedB126
Lsi11G014610Silver-seed gourdcarlsiB028
Lsi11G014610Silver-seed gourdcarlsiB307
Lsi11G014610Silver-seed gourdcarlsiB584
Lsi11G014610Silver-seed gourdcarlsiB659
Lsi11G014610Silver-seed gourdcarlsiB795
Lsi11G014610Cucumber (Chinese Long) v3cuclsiB110
Lsi11G014610Cucumber (Chinese Long) v3cuclsiB453
Lsi11G014610Cucumber (Chinese Long) v3cuclsiB529