LsiUNG000810 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	LsiUNG000810
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	50S ribosomal protein L35
Location	chr00 : 2463458 .. 2464563 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAAAGGCGCCAACAATTCGCCGACCGCAGGTTTCTGTGTGAAAAATTCCCCCCTACCTTCGCCCTTCGAGTACGACGGCGACGACGATGCTCAGGTGGTGCGTCAAGCTCCGATCTGCGGCGGCGAAGCCATCTCAAATTGTAAATTCCGTTTCTTCCACCCGCAGGATCTTTCACTCTGCTCCATCACTATACCAGCCCCTCCATTTCTCTCCGAATAATTTGAATTCCAGGTCCCTTTTCAATGCATCTCTGCAGACTCATTCTCCACTTGCGGCTTATCAGTGTATTCGGTCTTCGCCCTTGCCTCTCTCTGTAAGTTTAGTTTAGTTTCGTTTTCTTTGGTTGATTTTGTTGAGAGTTTTTTTCTTAGTTATATCTTGGATTGCCGGGGAAATGCTTGGAAGGTAGGGGGAACGTTTGATTTTGAGCTGATGAGAGGAATTATTTAGGAAAAGTTGATACAGTGGAGCCTCTATTCCTGTTATTTCGATGTTGTTCGCTCCACTTGATATAAAACGATGTTCGATTACATTGAATTAAGGTTGTTCAAGTGCGGCATGTTTCATCAAGAGACCGACGGAAGAAGAGAAAGCCGACGACGCCAGCCACTTCCAAATTGAAGAAAACTAAACTGAAATTTTACTCGTGAGTTCGTAATATTATGATTGTTATTATTTAATTTTGGATCTTTATCATTACTGTCTTGTAAGTTTGTGAGTAAATGTCGCTTTGTTGGTTGATCAGATCTTACAAGTCTAGGTTTTGGATGATGAAGGATGGGAGCATTAAACGTCGAATGGAAGGGAAAAGGCACAATGCACATTCCAAGGTTTGTCTTTCTGTTCATCAAATATTCTCCGTGGTTTAGTATCATATTGGCGTTGAAATGTAAATATTTGGAGCATCGTTTCAAGTTAGCTCATGTTCACTACATTTTCTCTGGGTTTAAATAGATATATGTGATGCTTAGTTTAGATTATCATAACATATTCCCTTGTCAATAACATAATGCTAATTTTAGTTCTCAGCTAGACGTTTAAATTGTACCACATGTTTAATTGATGCATTGTATTGTTTATCTTATAACAACTTTCTGAGATAG

mRNA sequence

TGGAAAGGCGCCAACAATTCGCCGACCGCAGGTTTCTGTGTGAAAAATTCCCCCCTACCTTCGCCCTTCGAGTACGACGGCGACGACGATGCTCAGGTGGTGCGTCAAGCTCCGATCTGCGGCGGCGAAGCCATCTCAAATTGTAAATTCCGTTTCTTCCACCCGCAGGATCTTTCACTCTGCTCCATCACTATACCAGCCCCTCCATTTCTCTCCGAATAATTTGAATTCCAGGTCCCTTTTCAATGCATCTCTGCAGACTCATTCTCCACTTGCGGCTTATCAGTGTATTCGGTCTTCGCCCTTGCCTCTCTCTGTTGTTCAAGTGCGGCATGTTTCATCAAGAGACCGACGGAAGAAGAGAAAGCCGACGACGCCAGCCACTTCCAAATTGAAGAAAACTAAACTGAAATTTTACTCATCTTACAAGTCTAGGTTTTGGATGATGAAGGATGGGAGCATTAAACGTCGAATGGAAGGGAAAAGGCACAATGCACATTCCAAGGTTTGTCTTTCTGTTCATCAAATATTCTCCGTGTTCTCAGCTAGACGTTTAAATTGTACCACATGTTTAATTGATGCATTGTATTGTTTATCTTATAACAACTTTCTGAGATAG

Coding sequence (CDS)

ATGCTCAGGTGGTGCGTCAAGCTCCGATCTGCGGCGGCGAAGCCATCTCAAATTGTAAATTCCGTTTCTTCCACCCGCAGGATCTTTCACTCTGCTCCATCACTATACCAGCCCCTCCATTTCTCTCCGAATAATTTGAATTCCAGGTCCCTTTTCAATGCATCTCTGCAGACTCATTCTCCACTTGCGGCTTATCAGTGTATTCGGTCTTCGCCCTTGCCTCTCTCTGTTGTTCAAGTGCGGCATGTTTCATCAAGAGACCGACGGAAGAAGAGAAAGCCGACGACGCCAGCCACTTCCAAATTGAAGAAAACTAAACTGAAATTTTACTCATCTTACAAGTCTAGGTTTTGGATGATGAAGGATGGGAGCATTAAACGTCGAATGGAAGGGAAAAGGCACAATGCACATTCCAAGGTTTGTCTTTCTGTTCATCAAATATTCTCCGTGTTCTCAGCTAGACGTTTAAATTGTACCACATGTTTAATTGATGCATTGTATTGTTTATCTTATAACAACTTTCTGAGATAG

Protein sequence

MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATSKLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSKVCLSVHQIFSVFSARRLNCTTCLIDALYCLSYNNFLR

Homology

[Close]

BLAST of LsiUNG000810 vs. TrEMBL
Match: A0A0A0LBT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G638010 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.6e-64
Identity = 131/139 (94.24%), Postives = 133/139 (95.68%), Query Frame = 1


Query: 1   MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHS 60
           MLR C KLRSAAAKPSQI+NSVSSTRRIFHSAPSLYQPLHFS NNLNSRSLFNAS QTHS
Sbjct: 1   MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHS 60

Query: 61  PLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATSKLKKTKLKFYSSYKSRFWMM 120
           PLAAYQCIRSSPLPLSVVQVRHVSSRDRR KRKPTTPATSKLKKTKLK YSSYKSRFW+M
Sbjct: 61  PLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATSKLKKTKLKAYSSYKSRFWLM 120

Query: 121 KDGSIKRRMEGKRHNAHSK 140
           KDGSIKRRMEGKRHNAHSK
Sbjct: 121 KDGSIKRRMEGKRHNAHSK 139

[Close]

BLAST of LsiUNG000810 vs. TrEMBL
Match: M5WNP2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012451mg PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.5e-27
Identity = 79/149 (53.02%), Postives = 99/149 (66.44%), Query Frame = 1


Query: 1   MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNN--LNSRSLFNASLQT 60
           M R C KLRS +   +Q +  +SS+     S+P L QPL F+ NN   + RSLFNA   T
Sbjct: 3   MQRLCTKLRSLSVHSNQTLPYLSSS--FLCSSPRLLQPLPFASNNNKWSLRSLFNAHSPT 62

Query: 61  HSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATSKLKKTKLKFYSSYKSRFW 120
             P  A   +R S  P+S++QVRHVSSR+R+K+RKP TP TSKLKKTK+K YSSYKSRF 
Sbjct: 63  Q-PSLAIATLRPSTFPISMLQVRHVSSRERKKRRKPMTPVTSKLKKTKIKAYSSYKSRFR 122

Query: 121 MMKDGSIKRRMEGKRHNAHSKVCLSVHQI 148
            M DG I+R  EGKRHNAH K  +S  ++
Sbjct: 123 TMNDGKIRRWREGKRHNAHLKSKISKRRL 148

[Close]

BLAST of LsiUNG000810 vs. TrEMBL
Match: A0A061G618_THECC (Cytosine-specific methyltransferase OS=Theobroma cacao GN=TCM_016644 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.3e-25
Identity = 78/140 (55.71%), Postives = 96/140 (68.57%), Query Frame = 1


Query: 1   MLRWCVKLRSAAAKPSQIVNSVSSTRR-IFHSAPSLYQPLHFSPNNLNSRSLFNASLQTH 60
           M R C KLRS A + +Q + S+S++RR + HS+P +  PL  +  + NS    NA+    
Sbjct: 1   MQRLCSKLRSLALRSTQTLPSLSASRRFLHHSSPPI--PLISTKWSFNSLLNNNAA---- 60

Query: 61  SPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATSKLKKTKLKFYSSYKSRFWM 120
           SP  A    R SPLPLSVVQVRHVSSR+R K+RKP TP TSK+KK K+K YSSYKSRF +
Sbjct: 61  SPSLAVNSFRYSPLPLSVVQVRHVSSRERAKRRKPMTPRTSKIKKIKMKSYSSYKSRFRV 120

Query: 121 MKDGSIKRRMEGKRHNAHSK 140
           M DGSI+R  EGK HNAH K
Sbjct: 121 MSDGSIRRWREGKNHNAHLK 134

[Close]

BLAST of LsiUNG000810 vs. TrEMBL
Match: A0A0D2R6U6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G180500 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-24
Identity = 73/139 (52.52%), Postives = 90/139 (64.75%), Query Frame = 1


Query: 1   MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHS 60
           M R C KLR  A + +Q + S+S++RRI H +   + P+HF     +     N S+   S
Sbjct: 1   MQRLCTKLRFLALQSTQTLPSLSASRRILHHS---FPPVHFISTKWSFEPFLNNSVA--S 60

Query: 61  PLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATSKLKKTKLKFYSSYKSRFWMM 120
           P  A     SSPL LS+VQVRHVSSR+R K+RKP TP TSKLKK K+K YSSYKSRF  M
Sbjct: 61  PPLAVNSFSSSPLLLSLVQVRHVSSRERAKRRKPMTPRTSKLKKIKMKSYSSYKSRFRTM 120

Query: 121 KDGSIKRRMEGKRHNAHSK 140
            DG+I+R  EGK HNAH K
Sbjct: 121 NDGNIRRWREGKNHNAHLK 134

[Close]

BLAST of LsiUNG000810 vs. TrEMBL
Match: A0A0D2S1Q2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G180500 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-24
Identity = 73/139 (52.52%), Postives = 90/139 (64.75%), Query Frame = 1


Query: 1   MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHS 60
           M R C KLR  A + +Q + S+S++RRI H +   + P+HF     +     N S+   S
Sbjct: 1   MQRLCTKLRFLALQSTQTLPSLSASRRILHHS---FPPVHFISTKWSFEPFLNNSVA--S 60

Query: 61  PLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATSKLKKTKLKFYSSYKSRFWMM 120
           P  A     SSPL LS+VQVRHVSSR+R K+RKP TP TSKLKK K+K YSSYKSRF  M
Sbjct: 61  PPLAVNSFSSSPLLLSLVQVRHVSSRERAKRRKPMTPRTSKLKKIKMKSYSSYKSRFRTM 120

Query: 121 KDGSIKRRMEGKRHNAHSK 140
            DG+I+R  EGK HNAH K
Sbjct: 121 NDGNIRRWREGKNHNAHLK 134

[Close]

BLAST of LsiUNG000810 vs. TAIR10
Match: AT5G45590.1 (AT5G45590.1 Ribosomal protein L35)

HSP 1 Score: 77.8 bits (190), Expect = 7.4e-15
Identity = 55/149 (36.91%), Postives = 88/149 (59.06%), Query Frame = 1


Query: 1   MLRWCVKLRSAAAKPSQIVNSV-SSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTH 60
           M R+C KLRS + + ++ ++   +S  R+ H +PS  +  H +   L      N++  + 
Sbjct: 1   MQRFCTKLRSISLQSNRNLSFYGASPHRLIHHSPSPSR--HLTTTTLG---FANSTKWSF 60

Query: 61  SPLAAY-----QCIRSSPLPLSVVQVRHVSSRDR----RKKRKPTTPATSKLKKTKLKFY 120
            P A         + ++ +P   VQVR+++S+++    +KK +P TP TSK+KK K+KFY
Sbjct: 61  VPAAGVFPSNVSSMGTTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSKVKKVKIKFY 120

Query: 121 SSYKSRFWMMKDGSIKRRMEGKRHNAHSK 140
           SS+K RF  + DG+I+R  EGKRHNAH K
Sbjct: 121 SSFKDRFKPLNDGTIRRWKEGKRHNAHLK 144

[Close]

BLAST of LsiUNG000810 vs. NCBI nr
Match: gi|449453326|ref|XP_004144409.1| (PREDICTED: uncharacterized protein LOC101219338 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 3.7e-64
Identity = 131/139 (94.24%), Postives = 133/139 (95.68%), Query Frame = 1


Query: 1   MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHS 60
           MLR C KLRSAAAKPSQI+NSVSSTRRIFHSAPSLYQPLHFS NNLNSRSLFNAS QTHS
Sbjct: 1   MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHS 60

Query: 61  PLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATSKLKKTKLKFYSSYKSRFWMM 120
           PLAAYQCIRSSPLPLSVVQVRHVSSRDRR KRKPTTPATSKLKKTKLK YSSYKSRFW+M
Sbjct: 61  PLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATSKLKKTKLKAYSSYKSRFWLM 120

Query: 121 KDGSIKRRMEGKRHNAHSK 140
           KDGSIKRRMEGKRHNAHSK
Sbjct: 121 KDGSIKRRMEGKRHNAHSK 139

[Close]

BLAST of LsiUNG000810 vs. NCBI nr
Match: gi|659120973|ref|XP_008460439.1| (PREDICTED: uncharacterized protein LOC103499252 [Cucumis melo])

HSP 1 Score: 250.4 bits (638), Expect = 2.4e-63
Identity = 131/139 (94.24%), Postives = 132/139 (94.96%), Query Frame = 1


Query: 1   MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHS 60
           MLRWC KLRSAAAKPSQIV SVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA  QTHS
Sbjct: 1   MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHS 60

Query: 61  PLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATSKLKKTKLKFYSSYKSRFWMM 120
           PLAAYQCIRSS LPLSVVQVRHVSSRDRR KRKPTTPATSKLKKTKLK YSSYKSRFW+M
Sbjct: 61  PLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATSKLKKTKLKAYSSYKSRFWLM 120

Query: 121 KDGSIKRRMEGKRHNAHSK 140
           KDGSIKRRMEGKRHNAHSK
Sbjct: 121 KDGSIKRRMEGKRHNAHSK 137

[Close]

BLAST of LsiUNG000810 vs. NCBI nr
Match: gi|1009165960|ref|XP_015901328.1| (PREDICTED: uncharacterized protein LOC107434376 [Ziziphus jujuba])

HSP 1 Score: 132.5 bits (332), Expect = 7.2e-28
Identity = 76/139 (54.68%), Postives = 95/139 (68.35%), Query Frame = 1


Query: 1   MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHS 60
           M R   +LRS A   +  +   SS+ R+ HS+  L+QPLH      + +SLF+AS  +  
Sbjct: 3   MQRLYSRLRSIAVHSAHTLPCRSSSSRLLHSSVLLHQPLHSHSTTWSVKSLFSAS-SSLQ 62

Query: 61  PLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATSKLKKTKLKFYSSYKSRFWMM 120
           P   +  +R SPLPLS+VQVRHVSSR+RRK+RKP TP TSKLKK K+K YSSYKSRF  M
Sbjct: 63  PSLGFNTVRYSPLPLSIVQVRHVSSRERRKRRKPMTPVTSKLKKIKMKSYSSYKSRFRTM 122

Query: 121 KDGSIKRRMEGKRHNAHSK 140
            DG+I+R  EGKRHNAH K
Sbjct: 123 NDGNIRRWKEGKRHNAHLK 140

[Close]

BLAST of LsiUNG000810 vs. NCBI nr
Match: gi|645265383|ref|XP_008238124.1| (PREDICTED: uncharacterized protein LOC103336802 [Prunus mume])

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27
Identity = 80/149 (53.69%), Postives = 100/149 (67.11%), Query Frame = 1


Query: 1   MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNN--LNSRSLFNASLQT 60
           M R C KLRS +   +Q + S SS+     S+P L+QPL F+ NN   + RSLFNA   T
Sbjct: 3   MQRLCTKLRSLSVHSTQTLPSFSSS--FLCSSPRLHQPLPFASNNNKWSLRSLFNAHSPT 62

Query: 61  HSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATSKLKKTKLKFYSSYKSRFW 120
             P  A   +R S  P+S++QVRHVSSR+R+K+RKP TP TSKLKKTK+K YSSYKSRF 
Sbjct: 63  Q-PSLAIATLRPSTFPISMLQVRHVSSRERKKRRKPMTPVTSKLKKTKIKAYSSYKSRFR 122

Query: 121 MMKDGSIKRRMEGKRHNAHSKVCLSVHQI 148
            M DG I+R  EGKRHNAH K  +S  ++
Sbjct: 123 TMNDGKIRRWREGKRHNAHLKSKISKRRL 148

[Close]

BLAST of LsiUNG000810 vs. NCBI nr
Match: gi|657973797|ref|XP_008378711.1| (PREDICTED: uncharacterized protein LOC103441791 [Malus domestica])

HSP 1 Score: 129.0 bits (323), Expect = 8.0e-27
Identity = 81/146 (55.48%), Postives = 97/146 (66.44%), Query Frame = 1


Query: 1   MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSL-YQPLHFSP--NNLNSRSLFNASLQ 60
           M R   KLRS +   +Q + S  S+  +  S P L +QPL F+   N    RSLF+A   
Sbjct: 3   MQRLFSKLRSFSVHSAQTLPSSLSSPSLLRSCPPLLHQPLPFASIDNRWIVRSLFSAHSP 62

Query: 61  THSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATSKLKKTKLKFYSSYKSRF 120
           T  P  A   +RSSP P S+VQVRHVSSR+R+K+RKP TP TSKLKKTKLK YSSYKSRF
Sbjct: 63  TQ-PSLAVTALRSSPFPFSMVQVRHVSSRERKKRRKPMTPVTSKLKKTKLKSYSSYKSRF 122

Query: 121 WMMKDGSIKRRMEGKRHNAHSKVCLS 144
             M DG+I+R   GKRHNAHSKVC +
Sbjct: 123 RTMNDGTIRRWRAGKRHNAHSKVCFA 147

The following BLAST results are available for this feature:

BLAST of LsiUNG000810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of LsiUNG000810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBT5_CUCSA	2.6e-64	94.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G638010 PE=4 SV=1	[more]
M5WNP2_PRUPE	9.5e-27	53.02	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012451mg PE=4 SV=1	[more]
A0A061G618_THECC	2.3e-25	55.71	Cytosine-specific methyltransferase OS=Theobroma cacao GN=TCM_016644 PE=3 SV=1	[more]
A0A0D2R6U6_GOSRA	2.0e-24	52.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G180500 PE=4 SV=1	[more]
A0A0D2S1Q2_GOSRA	2.0e-24	52.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G180500 PE=4 SV=1	[more]

BLAST of LsiUNG000810 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45590.1	7.4e-15	36.91	Ribosomal protein L35	[more]

BLAST of LsiUNG000810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453326\|ref\|XP_004144409.1\|	3.7e-64	94.24	PREDICTED: uncharacterized protein LOC101219338 [Cucumis sativus]	[more]
gi\|659120973\|ref\|XP_008460439.1\|	2.4e-63	94.24	PREDICTED: uncharacterized protein LOC103499252 [Cucumis melo]	[more]
gi\|1009165960\|ref\|XP_015901328.1\|	7.2e-28	54.68	PREDICTED: uncharacterized protein LOC107434376 [Ziziphus jujuba]	[more]
gi\|645265383\|ref\|XP_008238124.1\|	2.1e-27	53.69	PREDICTED: uncharacterized protein LOC103336802 [Prunus mume]	[more]
gi\|657973797\|ref\|XP_008378711.1\|	8.0e-27	55.48	PREDICTED: uncharacterized protein LOC103441791 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR021137	Ribosomal_L35

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0032776	DNA methylation on cytosine
biological_process	GO:0006306	DNA methylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0005488	binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
LsiUNG000810.1	LsiUNG000810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021137	Ribosomal protein L35	PFAM	PF01632	Ribosomal_L35p	coord: 106..139 score: 1.
None	No IPR available	PANTHER	PTHR36400	FAMILY NOT NAMED	coord: 1..139 score: 5.1
None	No IPR available	PANTHER	PTHR36400:SF1	SUBFAMILY NOT NAMED	coord: 1..139 score: 5.1
None	No IPR available	unknown	SSF143034	L35p-like	coord: 106..139 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
LsiUNG000810	Csa3G638010	Cucumber (Chinese Long) v2	culsiB149
LsiUNG000810	CSPI03G28000	Wild cucumber (PI 183967)	cpilsiB148
LsiUNG000810	Cucsa.149810	Cucumber (Gy14) v1	cgylsiB239
LsiUNG000810	CmoCh02G016920	Cucurbita moschata (Rifu)	cmolsiB513
LsiUNG000810	Cla002687	Watermelon (97103) v1	lsiwmB004
LsiUNG000810	MELO3C022766	Melon (DHL92) v3.5.1	lsimeB003
LsiUNG000810	ClCG07G002300	Watermelon (Charleston Gray)	lsiwcgB005
LsiUNG000810	MELO3C022766.2	Melon (DHL92) v3.6.1	lsimedB003
LsiUNG000810	Cla97C07G130570	Watermelon (97103) v2	lsiwmbB004
LsiUNG000810	Bhi05G000003	Wax gourd	lsiwgoB003
LsiUNG000810	Cp4.1LG05g00410	Cucurbita pepo (Zucchini)	cpelsiB577
LsiUNG000810	CsGy3G026020	Cucumber (Gy14) v2	cgyblsiB135
LsiUNG000810	Carg08871	Silver-seed gourd	carlsiB711

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
LsiUNG000810	Cucumber (Chinese Long) v3	cuclsiB162
LsiUNG000810	Cucurbita maxima (Rimu)	cmalsiB528
LsiUNG000810	Cucurbita maxima (Rimu)	cmalsiB463
LsiUNG000810	Cucurbita moschata (Rifu)	cmolsiB448
LsiUNG000810	Cucurbita pepo (Zucchini)	cpelsiB191