Cp4.1LG05g00410 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g00410
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	50S ribosomal protein L35
Location	Cp4.1LG05 : 769508 .. 772491 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGCCAATACCAACCTTCGCCTAGCGTAGGTTTCTCTCTCTCTTTAACAATTCCTTTTGGTCATACGACGGCGACGACGATGCTCAGGTGGTGTTCGAAGCTTCGATCTGCGGCGGCGAAACCATCTCAAATTGTACATAGCGTTTCTTCCACCCGCAGGATCTTTCACTCTGCTCCATCACTTTACCAGCCTCTCCATTTCTCTCCGAATAATTTGAGTTCCAGGTCCCTTCTCAATGCATCTTTACAGACTCATTCTTCGCTTGCGGCTTACCAGTGCATTCGATCTTCGCTCTCACCTCTCTATGTAAGTTTAGTTTAGTTTCGTTTTCTTTGGTATTTTGTTTAGTTCGTTGAGATGCTTGTAACTATATATTGGATTTCCGGGAAATGCTTGGGAGGTAGGGGAATCGCTTGATTTTGAGCTGATGAAAGGAATTGTTTAGGAAAAATTGACTCACTGGAGTCTCTATTCCCGTATTTCTTTGTTTGCACCATTTGATATTAAACGATGTTCGGTTACATAATTAAGGCTGTTCAAGTGCGACATGTTTCGTCAAGAGAGCGAAAGAAGAGGAGAAAGCCGATGACGCCAGTTACTTCCAAATTGAAGAAAACGAAGATAAAATGTTACTCGTGAGTTTTCAAAATTATGGTTTTTATTAATGAATTTTGGTTCTTTATCATTATTGTCTTGCAAGTTTGTGAGTAAATGACACTTTAAGATTTTCGATCAGGTCTTACAAGTCTAGGTTTTGGGTGAGGAAGGATGGGAGCATTAAACGTCGAAAGGAAGGGAAAAGGCACAATGCTCATTTGAAGGTTTGTCATTCTGTTTTATCAAATATGCTCCTTGGTTTAGTATTGTTTTGGCGTAGATATGTAAGTATTTGGAGGGCAGAGATTAGCTATACCATGTAAATTGGCCATTCTCTGAAAATTTCGTTTCAAGTTAGCTCATGTCTATCACTACATTGCCTCTGGCCTCTGGGTTTAAGCAGATATGTATAATGCTTGTTTATATGTTTTACGCGTCTTTATAATAATTTGCGTTTCAACCACTTCTTTTGTTTAGAATTGTAACCCTTAAGCAGAATGATTGAGCCTTTGATCTTAGCATTACTTATAGATTTATGATTTCGTTTTTAGAAAAGAACTGAATTTTGGTCGTTTTTTTGTTGTTCTATGTAGTTTAGACTATCTAATATATGCTAATGCTAATTTTAGTTCTCAGTTCTTCATGCTTAAATTGTAGCACGGGTTTAATGTGTATCTTTAATAGCTTTTGGAGATAGTTTTGAGGAGTTTCTACCCCCCGGGGGTTATGATGTCAACGATTTCTGCTCTTCATTTTCATTTCACAACTCCCATGTCTTTTACGAAGCTTAATACTCATGCTAGGGCATCTTTCTTGTTCAAAAAGATAAAGTAAATGCTTTTGTGAACTATTTGTTTGCATTTTAATCCTGAAGTTATCGTCGAGCATTGTATGTCCATCAATAAGGTCTTATCCCTAAAGTTATCATTATGATTGAGCATCTTGTGTCCATCAATAAGCCCTTATCCCTAAAACTTATTATTGCTATAATAATTCGAGACACAATATGGGAGAATGTGGCTAACTCAACCTTCCATCAAGTTGTCTTTAGCATCATTTTGTGGGAAAGTTGGGCTCCTTTAAGGCCTCCTTGAATCTTGGAGTCTAGAAGTCATGGGGATATTAGGATCAAGAAGCAAGAGAATTGAGGATTAGGTTTCTGGATGGGCTTGTAAATATGGCCTCTTTGAGTGACGTTCTTAAAGATGAACGAGCCTATCTAAAAGCGTAGTTTGCGCAGGTAATTGGGAAAGAGGCGATAAGTTGGAGGCAATTGGGAAAGAGGCGATAAGTTGGAGGCAAAAGCTTAAGTTAGATGGGTGGGGGAAGGAGATTGCGATTCTGAAGACTTCAATAAAATCACTAGCGGAGGGAGTAAGAACACAATATGCCTTTTGGAGAATGACAATGGCGAGAGGCTTCGAGGGGAAAAAGAGATTGAGAAGAAGATAGTCCTTTTTTTGCTTCTCTCTATGCTTCAGTAGTTCTTAACTATGTATATGTGAGATCCCACGTCGGTTGGAAAGGAAAACAAAACATTGTTTATAAAGGTGTGAAGATTTCTCTCTAGCAGACGCGTTTTAAAAATTTTGAAGTGAAGTCCAAAAGAGAAAACCAAAAGAACAATATCTGCTAGCAGTGAACTTGGGTCGCTATAGTATGTATGAGACTATTTTCTCATCTATACACTAGAGTTGCATACACTAGCTTTTTAGCTATGTACCTCCGACATGCATCGGATGGCTCTTCACTCCTTTATTCCATTCCATTTTATTTTTTTATCGCTATTTTAATATACTTCATTGAGCCAATTCAAAATGCAAAACTCAGCTTCCTGAAATTAACCATGTTGTTTGTATTTTCAATGCAGTCCAAGAAAGCAAAGCGTAGACTGAGACAGCCAGCCACTGTCCCATTGGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGTGGTTAAATTATTGGTACAAGTCTCCTCTCGTGCTAGTTTCAAGATCACCATCGAGATATCAGTCCTTGCTCATCTTTTGGATTTTATATTAAGTGCCTTAGAACAAGCTAAGAAAACAATTATTTCTTCTTTATTTGAAGTTTTGATGATAGAGATGATTGTGATTAAAAACGAGGTGATCTTTCAATTGTCTCCTTGTACCCTGAGTTAACCCCTAACAGTGTCCAATAATATTTATCTTTCGCATGGGATACGGTCCTACATGTGGCTTGCAATTAGCGATGTCCACGACACTAGGACCTCGTCTCTACCTTCCATTTAATTTTCTATCCCTTTGAAATTTCCCTATAAATTTGTCGAGGATCAAAAGGGGAGATTCTAGGTCGGATATTTGTGGAGATCGAGTTTGTTATATGATCGAGTTTCCAATA

mRNA sequence

GGCGCCAATACCAACCTTCGCCTAGCGTAGGTTTCTCTCTCTCTTTAACAATTCCTTTTGGTCATACGACGGCGACGACGATGCTCAGGTGGTGTTCGAAGCTTCGATCTGCGGCGGCGAAACCATCTCAAATTGTACATAGCGTTTCTTCCACCCGCAGGATCTTTCACTCTGCTCCATCACTTTACCAGCCTCTCCATTTCTCTCCGAATAATTTGAGTTCCAGGTCCCTTCTCAATGCATCTTTACAGACTCATTCTTCGCTTGCGGCTTACCAGTGCATTCGATCTTCGCTCTCACCTCTCTATGCTGTTCAAGTGCGACATGTTTCGTCAAGAGAGCGAAAGAAGAGGAGAAAGCCGATGACGCCAGTTACTTCCAAATTGAAGAAAACGAAGATAAAATGTTACTCGTCTTACAAGTCTAGGTTTTGGGTGAGGAAGGATGGGAGCATTAAACGTCGAAAGGAAGGGAAAAGGCACAATGCTCATTTGAAGTCCAAGAAAGCAAAGCGTAGACTGAGACAGCCAGCCACTGTCCCATTGGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGTGGTTAAATTATTGGTACAAGTCTCCTCTCGTGCTAGTTTCAAGATCACCATCGAGATATCAGTCCTTGCTCATCTTTTGGATTTTATATTAAGTGCCTTAGAACAAGCTAAGAAAACAATTATTTCTTCTTTATTTGAAGTTTTGATGATAGAGATGATTGTGATTAAAAACGAGGTGATCTTTCAATTGTCTCCTTGTACCCTGAGTTAACCCCTAACAGTGTCCAATAATATTTATCTTTCGCATGGGATACGGTCCTACATGTGGCTTGCAATTAGCGATGTCCACGACACTAGGACCTCGTCTCTACCTTCCATTTAATTTTCTATCCCTTTGAAATTTCCCTATAAATTTGTCGAGGATCAAAAGGGGAGATTCTAGGTCGGATATTTGTGGAGATCGAGTTTGTTATATGATCGAGTTTCCAATA

Coding sequence (CDS)

ATGCTCAGGTGGTGTTCGAAGCTTCGATCTGCGGCGGCGAAACCATCTCAAATTGTACATAGCGTTTCTTCCACCCGCAGGATCTTTCACTCTGCTCCATCACTTTACCAGCCTCTCCATTTCTCTCCGAATAATTTGAGTTCCAGGTCCCTTCTCAATGCATCTTTACAGACTCATTCTTCGCTTGCGGCTTACCAGTGCATTCGATCTTCGCTCTCACCTCTCTATGCTGTTCAAGTGCGACATGTTTCGTCAAGAGAGCGAAAGAAGAGGAGAAAGCCGATGACGCCAGTTACTTCCAAATTGAAGAAAACGAAGATAAAATGTTACTCGTCTTACAAGTCTAGGTTTTGGGTGAGGAAGGATGGGAGCATTAAACGTCGAAAGGAAGGGAAAAGGCACAATGCTCATTTGAAGTCCAAGAAAGCAAAGCGTAGACTGAGACAGCCAGCCACTGTCCCATTGGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGTGGTTAA

Protein sequence

MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHSSLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVRKDGSIKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNFCG

Homology

[Close]

BLAST of Cp4.1LG05g00410 vs. TrEMBL
Match: A0A0A0LBT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G638010 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 5.8e-66
Identity = 137/167 (82.04%), Postives = 150/167 (89.82%), Query Frame = 1


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60
           MLR C+KLRSAAAKPSQI++SVSSTRRIFHSAPSLYQPLHFS NNL+SRSL NAS QTHS
Sbjct: 1   MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHS 60

Query: 61  SLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120
            LAAYQCIRSS  PL  VQVRHVSSR+R+ +RKP TP TSKLKKTK+K YSSYKSRFW+ 
Sbjct: 61  PLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATSKLKKTKLKAYSSYKSRFWLM 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNFC 168
           KDGSIKRR EGKRHNAH KSK++KR+LR+PA VPLAYAKVMKKLNFC
Sbjct: 121 KDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC 167

[Close]

BLAST of Cp4.1LG05g00410 vs. TrEMBL
Match: M5WNP2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012451mg PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-38
Identity = 107/170 (62.94%), Postives = 121/170 (71.18%), Query Frame = 1


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNN--LSSRSLLNASLQT 60
           M R C+KLRS +   +Q +  +SS+     S+P L QPL F+ NN   S RSL NA   T
Sbjct: 3   MQRLCTKLRSLSVHSNQTLPYLSSS--FLCSSPRLLQPLPFASNNNKWSLRSLFNAHSPT 62

Query: 61  HSSLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFW 120
             SLA    +R S  P+  +QVRHVSSRERKKRRKPMTPVTSKLKKTKIK YSSYKSRF 
Sbjct: 63  QPSLAI-ATLRPSTFPISMLQVRHVSSRERKKRRKPMTPVTSKLKKTKIKAYSSYKSRFR 122

Query: 121 VRKDGSIKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNFCG 169
              DG I+R +EGKRHNAHLKSK +KRRLR PA V  AYAKVMKKLNFCG
Sbjct: 123 TMNDGKIRRWREGKRHNAHLKSKISKRRLRLPALVHPAYAKVMKKLNFCG 169

[Close]

BLAST of Cp4.1LG05g00410 vs. TrEMBL
Match: V4T3A6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002495mg PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.2e-36
Identity = 101/173 (58.38%), Postives = 120/173 (69.36%), Query Frame = 1


Query: 1   MLRWCSKLRSAAAKPSQ--IVHSVSSTRRIFHSAPSL---YQPLHFSPNNLSSRSLLNAS 60
           M R C+KLR+     S+  +  S +   R+FHSAPS      PL   P++ SS      S
Sbjct: 37  MQRLCNKLRTLTLSSSRRLLFQSHAPIHRLFHSAPSSKWRLSPLFNYPSSSSSHITRCCS 96

Query: 61  LQTHSSLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKS 120
             +  SLA+   + SS  PL  +QVRHVSSR+RKKRRKP+TPVTSK+KK K+K YSSYKS
Sbjct: 97  YPS-PSLASAPSLCSSRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKS 156

Query: 121 RFWVRKDGSIKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNFCG 169
           RF    DG ++R  EGKRHNAHLKSKK+KRRLRQPA VPLAYAKVMKKLNFCG
Sbjct: 157 RFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKLNFCG 208

[Close]

BLAST of Cp4.1LG05g00410 vs. TrEMBL
Match: A0A067K5R0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17087 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.7e-36
Identity = 98/179 (54.75%), Postives = 120/179 (67.04%), Query Frame = 1


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPN-----------NLSSR 60
           M R C+K RS A +  + V ++S + R+ HS P L +PL F+             N+SS+
Sbjct: 1   MQRLCTKFRSLAGRSIKTVPALSFSSRLIHSCPQLQRPLLFASASHKWNLSIPLFNVSSQ 60

Query: 61  SLLNASLQTHSSLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKC 120
           S   +  Q   S      I  SL     V VRHVSSRER+KRRKPMTPVTSK+KK K+K 
Sbjct: 61  SSFQSPSQAFQSPQRSSAILPSL-----VHVRHVSSRERRKRRKPMTPVTSKVKKIKMKS 120

Query: 121 YSSYKSRFWVRKDGSIKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNFCG 169
           YSSYKSRF    DGSI+R +EGK HNAHLKSKK++RRLR+P+TVP+AYAKVMKKLNFCG
Sbjct: 121 YSSYKSRFRTLSDGSIRRWREGKNHNAHLKSKKSRRRLRKPSTVPVAYAKVMKKLNFCG 174

[Close]

BLAST of Cp4.1LG05g00410 vs. TrEMBL
Match: A0A067F5R1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028473mg PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.8e-35
Identity = 101/173 (58.38%), Postives = 118/173 (68.21%), Query Frame = 1


Query: 1   MLRWCSKLRSAAAKPSQ--IVHSVSSTRRIFHSAPSL---YQPLHFSPNNLSSRSLLNAS 60
           M R C+KLR+     S+  +  S +   R FHSAPS      PL   P++ SS      S
Sbjct: 37  MQRLCNKLRTLTLSSSRRLLFQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSSSHITRCCS 96

Query: 61  LQTHSSLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKS 120
             +  SLAA   + S   PL  +QVRHVSSR+RKKRRKP+TPVTSK+KK K+K YSSYKS
Sbjct: 97  YPS-PSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKS 156

Query: 121 RFWVRKDGSIKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNFCG 169
           RF    DG ++R  EGKRHNAHLKSKK+KRRLRQPA VPLAYAKVMKKLNFCG
Sbjct: 157 RFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKLNFCG 208

[Close]

BLAST of Cp4.1LG05g00410 vs. TAIR10
Match: AT5G45590.1 (AT5G45590.1 Ribosomal protein L35)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-28
Identity = 86/181 (47.51%), Postives = 116/181 (64.09%), Query Frame = 1


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPN---NLSSRSLLNASLQ 60
           M R+C+KLRS          S+ S R +     S ++ +H SP+   +L++ +L  A+  
Sbjct: 1   MQRFCTKLRSI---------SLQSNRNLSFYGASPHRLIHHSPSPSRHLTTTTLGFANST 60

Query: 61  THSSLAAYQCIRSSLS-------PLYAVQVRHVSSRER----KKRRKPMTPVTSKLKKTK 120
             S + A     S++S       P + VQVR+++S+E+    KK+ +P TP+TSK+KK K
Sbjct: 61  KWSFVPAAGVFPSNVSSMGTTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSKVKKVK 120

Query: 121 IKCYSSYKSRFWVRKDGSIKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNF 168
           IK YSS+K RF    DG+I+R KEGKRHNAHLKSKK+KRRLRQP  VP AYAKVMKKLNF
Sbjct: 121 IKFYSSFKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKVMKKLNF 172

[Close]

BLAST of Cp4.1LG05g00410 vs. NCBI nr
Match: gi|659120973|ref|XP_008460439.1| (PREDICTED: uncharacterized protein LOC103499252 [Cucumis melo])

HSP 1 Score: 264.2 bits (674), Expect = 1.5e-67
Identity = 140/167 (83.83%), Postives = 151/167 (90.42%), Query Frame = 1


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60
           MLRWC+KLRSAAAKPSQIV SVSSTRRIFHSAPSLYQPLHFSPNNL+SRSL NA  QTHS
Sbjct: 1   MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHS 60

Query: 61  SLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120
            LAAYQCIRSSL PL  VQVRHVSSR+R+ +RKP TP TSKLKKTK+K YSSYKSRFW+ 
Sbjct: 61  PLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATSKLKKTKLKAYSSYKSRFWLM 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNFC 168
           KDGSIKRR EGKRHNAH KSK++KR+LR+PA VPLAYAKVMKKLNFC
Sbjct: 121 KDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC 165

[Close]

BLAST of Cp4.1LG05g00410 vs. NCBI nr
Match: gi|449453326|ref|XP_004144409.1| (PREDICTED: uncharacterized protein LOC101219338 [Cucumis sativus])

HSP 1 Score: 258.5 bits (659), Expect = 8.3e-66
Identity = 137/167 (82.04%), Postives = 150/167 (89.82%), Query Frame = 1


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60
           MLR C+KLRSAAAKPSQI++SVSSTRRIFHSAPSLYQPLHFS NNL+SRSL NAS QTHS
Sbjct: 1   MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHS 60

Query: 61  SLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120
            LAAYQCIRSS  PL  VQVRHVSSR+R+ +RKP TP TSKLKKTK+K YSSYKSRFW+ 
Sbjct: 61  PLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATSKLKKTKLKAYSSYKSRFWLM 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNFC 168
           KDGSIKRR EGKRHNAH KSK++KR+LR+PA VPLAYAKVMKKLNFC
Sbjct: 121 KDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC 167

[Close]

BLAST of Cp4.1LG05g00410 vs. NCBI nr
Match: gi|1009165960|ref|XP_015901328.1| (PREDICTED: uncharacterized protein LOC107434376 [Ziziphus jujuba])

HSP 1 Score: 177.9 bits (450), Expect = 1.4e-41
Identity = 106/168 (63.10%), Postives = 122/168 (72.62%), Query Frame = 1


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60
           M R  S+LRS A   +  +   SS+ R+ HS+  L+QPLH      S +SL +AS     
Sbjct: 3   MQRLYSRLRSIAVHSAHTLPCRSSSSRLLHSSVLLHQPLHSHSTTWSVKSLFSASSSLQP 62

Query: 61  SLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120
           SL  +  +R S  PL  VQVRHVSSRER+KRRKPMTPVTSKLKK K+K YSSYKSRF   
Sbjct: 63  SLG-FNTVRYSPLPLSIVQVRHVSSRERRKRRKPMTPVTSKLKKIKMKSYSSYKSRFRTM 122

Query: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNFCG 169
            DG+I+R KEGKRHNAHLKSKK+KRRLRQPA VPLAYAKVMKKLNFCG
Sbjct: 123 NDGNIRRWKEGKRHNAHLKSKKSKRRLRQPAIVPLAYAKVMKKLNFCG 169

[Close]

BLAST of Cp4.1LG05g00410 vs. NCBI nr
Match: gi|645265383|ref|XP_008238124.1| (PREDICTED: uncharacterized protein LOC103336802 [Prunus mume])

HSP 1 Score: 170.6 bits (431), Expect = 2.3e-39
Identity = 108/170 (63.53%), Postives = 122/170 (71.76%), Query Frame = 1


Query: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNN--LSSRSLLNASLQT 60
           M R C+KLRS +   +Q + S SS+     S+P L+QPL F+ NN   S RSL NA   T
Sbjct: 3   MQRLCTKLRSLSVHSTQTLPSFSSS--FLCSSPRLHQPLPFASNNNKWSLRSLFNAHSPT 62

Query: 61  HSSLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFW 120
             SLA    +R S  P+  +QVRHVSSRERKKRRKPMTPVTSKLKKTKIK YSSYKSRF 
Sbjct: 63  QPSLAI-ATLRPSTFPISMLQVRHVSSRERKKRRKPMTPVTSKLKKTKIKAYSSYKSRFR 122

Query: 121 VRKDGSIKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNFCG 169
              DG I+R +EGKRHNAHLKSK +KRRLR PA V  AYAKVMKKLNFCG
Sbjct: 123 TMNDGKIRRWREGKRHNAHLKSKISKRRLRLPALVHPAYAKVMKKLNFCG 169

[Close]

BLAST of Cp4.1LG05g00410 vs. NCBI nr
Match: gi|1000964846|ref|XP_015575046.1| (PREDICTED: uncharacterized protein LOC8283019 isoform X1 [Ricinus communis])

HSP 1 Score: 170.2 bits (430), Expect = 3.0e-39
Identity = 104/164 (63.41%), Postives = 120/164 (73.17%), Query Frame = 1


Query: 5   CSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHSSLAA 64
           C+KLRS A +  + + ++S + R  HS+  LYQPL F+  +    SL NAS     S+A 
Sbjct: 5   CTKLRSFAGQSIRTLPAISLSGRQLHSSSQLYQPLIFASAS-RKWSLTNASSFQFPSVAF 64

Query: 65  YQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVRKDGS 124
              +RSS      VQVRHVSSRER+KRRKPMTPV SK+KK KIK YSSYKSRF    DGS
Sbjct: 65  QTPLRSSAVFPSLVQVRHVSSRERRKRRKPMTPVISKVKKIKIKSYSSYKSRFRTMNDGS 124

Query: 125 IKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNFCG 169
           I+R KEGKRHNAHLKSKKAKRRLRQP TVP+AYAKVMKKLNFCG
Sbjct: 125 IRRWKEGKRHNAHLKSKKAKRRLRQPGTVPVAYAKVMKKLNFCG 167

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g00410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g00410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBT5_CUCSA	5.8e-66	82.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G638010 PE=4 SV=1	[more]
M5WNP2_PRUPE	1.0e-38	62.94	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012451mg PE=4 SV=1	[more]
V4T3A6_9ROSI	2.2e-36	58.38	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002495mg PE=4 SV=1	[more]
A0A067K5R0_JATCU	3.7e-36	54.75	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17087 PE=4 SV=1	[more]
A0A067F5R1_CITSI	1.8e-35	58.38	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028473mg PE=4 SV=1	[more]

BLAST of Cp4.1LG05g00410 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45590.1	1.1e-28	47.51	Ribosomal protein L35	[more]

BLAST of Cp4.1LG05g00410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120973\|ref\|XP_008460439.1\|	1.5e-67	83.83	PREDICTED: uncharacterized protein LOC103499252 [Cucumis melo]	[more]
gi\|449453326\|ref\|XP_004144409.1\|	8.3e-66	82.04	PREDICTED: uncharacterized protein LOC101219338 [Cucumis sativus]	[more]
gi\|1009165960\|ref\|XP_015901328.1\|	1.4e-41	63.10	PREDICTED: uncharacterized protein LOC107434376 [Ziziphus jujuba]	[more]
gi\|645265383\|ref\|XP_008238124.1\|	2.3e-39	63.53	PREDICTED: uncharacterized protein LOC103336802 [Prunus mume]	[more]
gi\|1000964846\|ref\|XP_015575046.1\|	3.0e-39	63.41	PREDICTED: uncharacterized protein LOC8283019 isoform X1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR021137	Ribosomal_L35

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0008150	biological_process
biological_process	GO:0009853	photorespiration
biological_process	GO:0097339	glycolate transmembrane transport
biological_process	GO:0006412	translation
biological_process	GO:1901975	glycerate transmembrane transport
biological_process	GO:0032776	DNA methylation on cytosine
biological_process	GO:0006306	DNA methylation
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0005488	binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:1901974	glycerate transmembrane transporter activity
molecular_function	GO:0043879	glycolate transmembrane transporter activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g00410.1	Cp4.1LG05g00410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021137	Ribosomal protein L35	PFAM	PF01632	Ribosomal_L35p	coord: 106..164 score: 2.5
None	No IPR available	PANTHER	PTHR36400	FAMILY NOT NAMED	coord: 1..168 score: 1.4
None	No IPR available	PANTHER	PTHR36400:SF1	SUBFAMILY NOT NAMED	coord: 1..168 score: 1.4
None	No IPR available	unknown	SSF143034	L35p-like	coord: 106..164 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG05g00410	Cucsa.149810	Cucumber (Gy14) v1	cgycpeB0403
Cp4.1LG05g00410	CmaCh02G016450	Cucurbita maxima (Rimu)	cmacpeB647
Cp4.1LG05g00410	CmoCh02G016920	Cucurbita moschata (Rifu)	cmocpeB596
Cp4.1LG05g00410	Cla002687	Watermelon (97103) v1	cpewmB697
Cp4.1LG05g00410	Csa3G638010	Cucumber (Chinese Long) v2	cpecuB716
Cp4.1LG05g00410	MELO3C022766	Melon (DHL92) v3.5.1	cpemeB687
Cp4.1LG05g00410	ClCG07G002300	Watermelon (Charleston Gray)	cpewcgB686
Cp4.1LG05g00410	CSPI03G28000	Wild cucumber (PI 183967)	cpecpiB718
Cp4.1LG05g00410	LsiUNG000810	Bottle gourd (USVL1VR-Ls)	cpelsiB577
Cp4.1LG05g00410	MELO3C022766.2	Melon (DHL92) v3.6.1	cpemedB819
Cp4.1LG05g00410	CsaV3_3G030390	Cucumber (Chinese Long) v3	cpecucB0893
Cp4.1LG05g00410	Bhi05G000003	Wax gourd	cpewgoB0936
Cp4.1LG05g00410	CsGy3G026020	Cucumber (Gy14) v2	cgybcpeB424
Cp4.1LG05g00410	Carg08871	Silver-seed gourd	carcpeB1099

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG05g00410	Silver-seed gourd	carcpeB0115
Cp4.1LG05g00410	Cucurbita pepo (Zucchini)	cpecpeB273
Cp4.1LG05g00410	Cucurbita maxima (Rimu)	cmacpeB543
Cp4.1LG05g00410	Cucurbita moschata (Rifu)	cmocpeB498
Cp4.1LG05g00410	Watermelon (Charleston Gray)	cpewcgB625
Cp4.1LG05g00410	Watermelon (97103) v1	cpewmB684