Lsi09G001650.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G001650.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	30S ribosomal S6 alpha, chloroplastic-like protein
Location	chr09 : 1712651 .. 1717275 (-)
Sequence length	561

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTCACTTCCACTCTCACCGCTACTTCTTCAACCTCTCCTCTCTCCTCCAAGCCCCTTTCCCTTCCCCCATTCACGCATCAAATTTCTTTCCCCTTTACCCTCAAACCCTCCAAATCCCTCTTTTCTGCCGAAGGAATCGGCCCTGCTTTGGGTCTCGGATTGTCCGTGAAAGCCCAAACTCTTGAATTTTCAGGTTCGCTCTTCGAAGGGGGGTTCGGAGCTCAGGATGAACCGCCTGCCCCTCCAGGAACAGGATTCGCCGCTGCCCTCGAAGATAAGGAGGAGCCTCAGTGCCCTCCTGGACTTCGAAAGTACGAGACTATGGTGGTTTTGAGGCCCGACATGTCTGAAGACGAGAGACTCGCTTTCACCGAGAAATACGAAGAGGTAGTATCGTCTCTGAAATGTTGCTACTGTGCTGTTGCCTTTTCCCCCTTCTGTAATTTTTCTTTGGTTTCTGAGGAAAAGAGAGAGACCAAAGGAAAACCGAAATTTGTTTAGACTAGTTTCATATGTGAGAGAGAATTCAGTTTGTTTCTCTGTTTAAATTGGGTTTAAGATCACATACTCCTTGTGGCCTTCCTGAGAAACCACTTGCGATGTAATGAGGTGGGAGATTGTCATTGTCTGAATCAGAACACATTATTCAAGTAATGGATAGCTCATGAAAACTTAGGCTGCAGTTTATGCAAACTAGTAGCTTTTATGGGAATGCTGTTGAAAAAATTATAATATACGAGTTTTCCTGTATTCTCTGTTTGAGTGTTTGGTTCCCAAGAAGTGAGAACCTTTTGTCGTGTCAGCCTTCTAAGTCCTCTGGAGACAGTAGTTTTAAGAATTTCACATTGGAAAGATGGAGACACATGAGCCACTCTTCTTGTTGCAAATTGATTTTGAGATGTAACTCTATGCTTATCTAATATAGTATCCAAAGTCCAATCGAGTATTTGGTATAAAAAAAGGATTTGACCCAAGAATGAGTGAACCTAAAGAAGCACCATCTTAAAGGGGCATATTGAGGATTATAATTGGAAAGATGGAGAGATATATGTGTTACTTCTTTCTTTGGCAATTGGTTTTGAGATGTAACTTTATGTCATCTAATAGGTAGGTAGGGACGAGATGGATTATTTTATTTCTTTGAGGAATATTTTCTATTGAACTTTAGGGATGTTTGACCATCAATAAACGTGAGTTTAGAACCCTAAGTTAGGAAGGTTGGGTTTGTATAACCTATGTATTCTGGAAAGGAATCGGTGTTTGGAAATTTGAGTTTGTGTAACTTGTAATTGGTGGGGAGTTCAGATTTTTTCTTTCTTTTTCTTTTTCTTTTTATTTTGTTAGTCTAGATTCGTGAAATATAACTTTATGTAGTTTGTAAGATTAGCAAACTTATAGTTTGGAATAAGCAAATCAACATTTTAAACTCTTCAGTCTAATCTCATGTTACGCAAATTTAATCCACGAACCAACTTCTAGTGCTTGAAAAAATATATTGGAGTGTCAAACAAATTTGATGTGGAGGGGCACTAGCTGATTTGTTGTAAATAGGACAGTGGCAGCATTGAGACCATATTTATGAGAGAACATTCAAGAAAGGCAGGAAAGAGATGAAGCCTGTTAGGATTGACTTTCTAAGTGTTTATAAACACTTTTTTGCACTTATAAACACTTAGAAAGTCAATCAAAACGCACTTGATAGTTAACATGCATTTTTGAAGCAAAGTTGCCTGAATGGGCAATTTATTTCTTATGGGAACTGTTTGCTTGTTATATTCCCTACAAGTATGCACTCCTTATCATGAAAACATTGAGTGGAATACAAAGAACTTTTTTCTTTTGTTTTTTCGATGAGTGTATATTGTTAATTGTGAGAAATTCTCCCCTTGATATAAGTAAAATTCTGGTTGTGGAGTAAAGTTACGAACTGGGGATTTATATACTGTAAGCTGATGATCTTAGTTGATTGAATGATTTCGGTCTTGACTAAAGCATAACTTTTTCTTTCTTATTTATTAAGAGGTAATTTAGCTTTATATAAGCAAATGATTCTTTGGTGAAGGGACAATCGAGTTAGCTTTGTTTTCTTTCTTAGAACTCAAGGACACAGTTGTACAACCTATAGAACAGATCCTGTTCAAGTAACGTCGTTAGTTTTGTTTTCTTTCAACATAGTGTTGATAAGAATGGCCTATTTTGCAGTTGCTTGTTGCTGGGGGTGCCATGTATGTTGAAGTATTCCACAAAGGTCTCATTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACTAACACTTACTTGGATGGCATCAATCTCCTCTTCACCTACTTCACAAAACCCGAATCAATGGGAATTCTCGACGCAACACTTCAAGCAGATGACGATGTTGTTCGATCAATGAGTTTCAAGGTAAGGAAACGAAAATACTAAGTATGCCTTAGCGGTAAATTTCTTGGTCTTTCACATCATCTTTTGGACAATTTTATTCAAAGCAATGGAAAAGATGTGTAGTTGCAATTTGTGCTTTTCATTTTCAAAATGAGTGCTGCTATTGTGACAACTCTATGGCCATTTAGGCTTTATCCATAACCATCTGATTGCTGTTCTTTTCATTACAGCCTTCCAATGGAAGTGCTATATGAAGTTGGAAAAAAGTTAGATAGAGAAAAAGGAATTTAGATTATATGTTGATCTTTCATAGCTGGAAAATCCACTTAGTGACTGAACTTTTTTTTTAATGATCCACCAATGAGTGTCCTGTTCTATCAATCAAGCAACACACTCCGTTGAAAGTGCATTTGGATTCAAAAGAAATAGAAAGATAAGTACGAGCATGGAGTACTAGGTAGAAGTTGAGGGGTTGTCTTCAAAATTATTATTACTTTTTTTATGGTTTTTTTTTCTTTTAAAGTTCTGGTCCAATGAATGGTAAAAGTTAATGTCATTGTTAGAGTTGAAATTATTAGTTACAAATTTGTTATTGTGAAAGGAACAAGCTCGTTTATTTTTTAGAAAAATGTCTTTTCGTCTCTAAGTTTTGAGCATAGTTTTTGTATGTTCCTTATGTTTTAAAATATTACATTTGTATTTCAGAGTTTTTAATTTTTTTTAATTTCTAGGATTCAACATTTTTATTTGGTATTTAAGTTTTAGGATTTTACACTTTTATCTTTAGAGTTTTACTTTTAGTTATTGGTGTTAGTTATTGGCGTTGACTTTTGGTAAAATAATTTGTCTTTTAATTGAAAGAAAACCATGCTATTTTTTTTTAATGGAAAGTTACCGTTAGTTGAAGAAGTTTTTACTTGCTATAATAAAATCAATTTACAAAATAGAAAAATGTTATGAAAGCAACTTTCAAGCAAACTTTGATGTCACGTCATATATTTTTATTGTAATGATGAGAACTTCAAACCGTAAATATCACTTTTCGATAATGCTTCGAACATATTCTTTGCTTTATCTTTTTCATTATTATTTGGGCTCGGTCAATTATGGAAGGATGGTTCCTTAAGATTTTTATTTTAATAAAATTACAAAAATGAGGGATAATGCGACTTTAATTTTTATTATTAGAAAAACTTTTACAAATAAAAAAAATGTCAAACTATTTACATAAAATAGTAAAAAAATACTGATAGACTTCTATTAAGTCTATCACAACTATTTAAAAATTTTGCTATTTTGTGTAAATAATTTACCTTATTTTTCTGTTTTTAAAACTTCCTTTTTTTTATTATTGTATTAAAGAGAAAAAAACAACATATATTTTGCCTAATTTGGTTGAAAGAGAAAAAAGGTTGATTAACTAAACTCAGTTTTTTTTAGTCGATAAATGTAGGATTGTAAGATCGAATCCTTAACTTAATGAAAGATATATCAAAAGAAAGTTACGAAAGATAATAGGTATTATTTATTAAAGAATTGACGACTATACTACGAGTTTAGCAGTGAAGAAATTGCAACTAAAAATGTAATTGCATAGGTTATAGATTGCAAAATGTATGGTAATGGATGATAACTATGATTATTTAAATTGACAATTAGATTAAAACTGCTGTAAATCCAATATTCTTACTACCATTGACTTATTATTATTGTTTTTTTTTTTTTTTACAATTATGTGGTATGCGAGAATCAAATTTTTAACGTCAAAATTTTGATAGTACAAGTACTATATTAGCTGAGCTATCTTCATTTTGGCATCATTTTTATTTTTTAGTAAACTATCATTGACTTATAAAGTGATTAATGGCCAAGATGAATATAACTTAGTTGTAATTGACATTTTTTCTTTTGAGGTTAAAAGATTCAAATTCACATTCATTTTACTTAAAAAAAAAAAAAAAAGTAATTAAGTTTATTAAAATGAATTCTAGAAAATATTTTATTTGCAAGTGCTTTTACAAAATTATGTATATTTCCTATATATATATACAAGAATGCTACCTAATAAAAATTTACTTACAAAATATGTCTATTTATATAAACTGAAACAATACCATTCAATGACAAACTTGGAATGACTTACAACAAGTGATTTTTCTTTCCAGAAAATTTTCTTTCCAATTTGTTTCTAGTCATACTGGCAAATGTCTAGAAATCGA

mRNA sequence

ATGGCCTTCACTTCCACTCTCACCGCTACTTCTTCAACCTCTCCTCTCTCCTCCAAGCCCCTTTCCCTTCCCCCATTCACGCATCAAATTTCTTTCCCCTTTACCCTCAAACCCTCCAAATCCCTCTTTTCTGCCGAAGGAATCGGCCCTGCTTTGGGTCTCGGATTGTCCGTGAAAGCCCAAACTCTTGAATTTTCAGGTTCGCTCTTCGAAGGGGGGTTCGGAGCTCAGGATGAACCGCCTGCCCCTCCAGGAACAGGATTCGCCGCTGCCCTCGAAGATAAGGAGGAGCCTCAGTGCCCTCCTGGACTTCGAAAGTACGAGACTATGGTGGTTTTGAGGCCCGACATGTCTGAAGACGAGAGACTCGCTTTCACCGAGAAATACGAAGAGAAAAACAAAGCTGGTGAAACTAACACTTACTTGGATGGCATCAATCTCCTCTTCACCTACTTCACAAAACCCGAATCAATGGGAATTCTCGACGCAACACTTCAAGCAGATGACGATGTTGTTCGATCAATGAGTTTCAAGTCATACTGGCAAATGTCTAGAAATCGA

Coding sequence (CDS)

ATGGCCTTCACTTCCACTCTCACCGCTACTTCTTCAACCTCTCCTCTCTCCTCCAAGCCCCTTTCCCTTCCCCCATTCACGCATCAAATTTCTTTCCCCTTTACCCTCAAACCCTCCAAATCCCTCTTTTCTGCCGAAGGAATCGGCCCTGCTTTGGGTCTCGGATTGTCCGTGAAAGCCCAAACTCTTGAATTTTCAGGTTCGCTCTTCGAAGGGGGGTTCGGAGCTCAGGATGAACCGCCTGCCCCTCCAGGAACAGGATTCGCCGCTGCCCTCGAAGATAAGGAGGAGCCTCAGTGCCCTCCTGGACTTCGAAAGTACGAGACTATGGTGGTTTTGAGGCCCGACATGTCTGAAGACGAGAGACTCGCTTTCACCGAGAAATACGAAGAGAAAAACAAAGCTGGTGAAACTAACACTTACTTGGATGGCATCAATCTCCTCTTCACCTACTTCACAAAACCCGAATCAATGGGAATTCTCGACGCAACACTTCAAGCAGATGACGATGTTGTTCGATCAATGAGTTTCAAGTCATACTGGCAAATGTCTAGAAATCGA

Protein sequence

MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSEDERLAFTEKYEEKNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRSMSFKSYWQMSRNR

Homology

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BLAST of Lsi09G001650.1 vs. Swiss-Prot
Match: RR6_ARATH (30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana GN=RPS6 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.5e-43
Identity = 106/206 (51.46%), Postives = 127/206 (61.65%), Query Frame = 1


Query: 4   TSTLTATSSTSPL---SSKPLSLPPFTHQISFPFTLKP--SKSLFSAEGIGPALGLGLSV 63
           +S   + S+  PL   SS+PL        +SF  +L+P  SKS      I    G    V
Sbjct: 3   SSLCVSNSTICPLPNVSSQPL--------LSFSHSLRPFISKSKPMCASIQKRDGSQFVV 62

Query: 64  KAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMS 123
           K+Q L+FSG+ FEGGFG+ D+P +P G+G + ALEDK EPQCPPGLR+YETM VLRPDMS
Sbjct: 63  KSQALDFSGTFFEGGFGSDDDPTSPSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMS 122

Query: 124 EDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYF 179
           EDERL  T+KYEE                          KNKAGETNTYLDGI LLFTYF
Sbjct: 123 EDERLGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYF 182

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BLAST of Lsi09G001650.1 vs. Swiss-Prot
Match: RR6_SPIOL (30S ribosomal protein S6 alpha, chloroplastic (Fragment) OS=Spinacia oleracea GN=RPS6 PE=1 SV=2)

HSP 1 Score: 159.1 bits (401), Expect = 4.8e-38
Identity = 93/170 (54.71%), Postives = 106/170 (62.35%), Query Frame = 1


Query: 36  LKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDE-PPAPPGTGFAAALED 95
           LKPS+  + +         G  VKA  L+FSGS FEGGFG  DE PP+ P  G A  +E+
Sbjct: 2   LKPSRHHYLSN-------YGPYVKAIALDFSGSFFEGGFGGLDEDPPSTPPAGLA--VEE 61

Query: 96  KEEPQCPPGLRKYETMVVLRPDMSEDERLAFTEKYEE----------------------- 155
           K EPQCPPGLR+YETM VLRPDM+EDERL  T+KYEE                       
Sbjct: 62  KPEPQCPPGLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYS 121

Query: 156 ---KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRSMSFK 179
              KNKAGETN YLDGI LLFTYFTKPES+  L+A L  DDDV+RS SFK
Sbjct: 122 IKRKNKAGETNNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFK 162

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BLAST of Lsi09G001650.1 vs. TrEMBL
Match: A0A0A0KK24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G148810 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.4e-76
Identity = 159/204 (77.94%), Postives = 165/204 (80.88%), Query Frame = 1


Query: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSK   L PFT+QISFPF LK SK LFS  GIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGS FEGG G+QDEPPAPPGTGFA ALE+KEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTK 179
           ERLAFTEKYEE                          KNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

[Close]

BLAST of Lsi09G001650.1 vs. TrEMBL
Match: A0A068UUY8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035594001 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 6.3e-45
Identity = 113/198 (57.07%), Postives = 130/198 (65.66%), Query Frame = 1


Query: 12  STSPLSSKPLSLPP-----FTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFS 71
           S+S +SS  L+ P      FT  ++ PF  K  K L     I       LSVKAQTL+FS
Sbjct: 3   SSSLISSPSLNSPSPTVLSFTRSLNSPFP-KFHKPLHPLTKIPV-----LSVKAQTLDFS 62

Query: 72  GSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSEDERLAFT 131
           GS FEGG GA D+PP  PG+G AA +EDKEEPQCPPGLR+YETM VLRPDMSEDERL  T
Sbjct: 63  GSFFEGGLGADDDPPISPGSGIAA-VEDKEEPQCPPGLRQYETMAVLRPDMSEDERLTLT 122

Query: 132 EKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGI 179
           +KYEE                          KNKAGETNTYLDGI LLFTYFTKPESM +
Sbjct: 123 QKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESMEV 182

[Close]

BLAST of Lsi09G001650.1 vs. TrEMBL
Match: A0A0D2Q1S9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G256400 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.1e-44
Identity = 115/204 (56.37%), Postives = 133/204 (65.20%), Query Frame = 1


Query: 11  SSTSPLSSKPLS---LPPFTHQ--ISFPFTLKPS----KSLFSAEGIG-PALGLGLSVKA 70
           S TS L++ P     LP F+    +SF  +LKP     KS+ S +    P+    L+VKA
Sbjct: 3   SPTSALTNSPFCPHLLPQFSPLPVLSFTHSLKPIPPKLKSMISLKRDNHPST---LTVKA 62

Query: 71  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 130
           QTL+FSGS FEGGFG+ D+PP+ PG+G   ALEDKEEPQCPPGLR+YETM VLRPDMSED
Sbjct: 63  QTLDFSGSFFEGGFGSDDDPPSQPGSGI-TALEDKEEPQCPPGLRQYETMAVLRPDMSED 122

Query: 131 ERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTK 179
           ERLA T+KYEE                          KNKAGETNTYLDGI LLFTYFTK
Sbjct: 123 ERLALTQKYEELLVAGGGMYIEVFNRGVIPLAYSIKKKNKAGETNTYLDGIYLLFTYFTK 182

[Close]

BLAST of Lsi09G001650.1 vs. TrEMBL
Match: A0A0B0PSF5_GOSAR (30S ribosomal S6 alpha, chloroplastic-like protein OS=Gossypium arboreum GN=F383_05526 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 9.1e-44
Identity = 109/186 (58.60%), Postives = 122/186 (65.59%), Query Frame = 1


Query: 20  PLSLPPFTHQI-SFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQD 79
           PL +  FTH + S P  LK   SL       P+    L+VKAQTL+FSGS FEGGFG+ D
Sbjct: 23  PLPVLSFTHSLKSIPPKLKSLISL--KRDNHPST---LTVKAQTLDFSGSFFEGGFGSDD 82

Query: 80  EPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSEDERLAFTEKYEE------- 139
           +PP+ PG+G   ALEDKEEPQCPPGLR+YETM VLRPDMSEDERLA T+KYEE       
Sbjct: 83  DPPSQPGSGI-TALEDKEEPQCPPGLRQYETMAVLRPDMSEDERLALTQKYEELLVAGGG 142

Query: 140 -------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVV 179
                              KNKAGETN YLDGI LLFTYFTKPESM  L+A L  DDDV+
Sbjct: 143 MYIEVFNRGVIPLAYSIKKKNKAGETNAYLDGIYLLFTYFTKPESMTALEAALNTDDDVI 202

[Close]

BLAST of Lsi09G001650.1 vs. TrEMBL
Match: A0A061G6Q1_THECC (Translation elongation factor EF1B/ribosomal protein S6 family protein OS=Theobroma cacao GN=TCM_016508 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.9e-43
Identity = 109/201 (54.23%), Postives = 130/201 (64.68%), Query Frame = 1


Query: 8   TATSSTSPLSSKPLSLPPFTHQISFPFTLKP----SKSLFSAEGIGPALGLGLSVKAQTL 67
           T++ + SP   + L+  P    +SF  +LKP    SKSL S +         ++VKA+TL
Sbjct: 135 TSSLTKSPFCPQHLTQFPPLPFLSFTHSLKPIPKKSKSLTSLKRGNFTT---VTVKARTL 194

Query: 68  EFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSEDERL 127
           +FSGS FEGGFG+ D+PP+ PG+G   ALEDKEEPQCPPGLR+YETM+VLRPDMSEDERL
Sbjct: 195 DFSGSFFEGGFGSDDDPPSQPGSGI-TALEDKEEPQCPPGLRQYETMMVLRPDMSEDERL 254

Query: 128 AFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPES 179
           A T+KYEE                          KNKAGETNTYLDGI LLFTYF KPES
Sbjct: 255 ALTQKYEELLVAGGGMYVEVFNRGVVPLAYSIKKKNKAGETNTYLDGIYLLFTYFMKPES 314

[Close]

BLAST of Lsi09G001650.1 vs. TAIR10
Match: AT1G64510.1 (AT1G64510.1 Translation elongation factor EF1B/ribosomal protein S6 family protein)

HSP 1 Score: 175.3 bits (443), Expect = 3.6e-44
Identity = 106/206 (51.46%), Postives = 127/206 (61.65%), Query Frame = 1


Query: 4   TSTLTATSSTSPL---SSKPLSLPPFTHQISFPFTLKP--SKSLFSAEGIGPALGLGLSV 63
           +S   + S+  PL   SS+PL        +SF  +L+P  SKS      I    G    V
Sbjct: 3   SSLCVSNSTICPLPNVSSQPL--------LSFSHSLRPFISKSKPMCASIQKRDGSQFVV 62

Query: 64  KAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMS 123
           K+Q L+FSG+ FEGGFG+ D+P +P G+G + ALEDK EPQCPPGLR+YETM VLRPDMS
Sbjct: 63  KSQALDFSGTFFEGGFGSDDDPTSPSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMS 122

Query: 124 EDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYF 179
           EDERL  T+KYEE                          KNKAGETNTYLDGI LLFTYF
Sbjct: 123 EDERLGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYF 182

[Close]

BLAST of Lsi09G001650.1 vs. NCBI nr
Match: gi|778699334|ref|XP_011654693.1| (PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 2.0e-76
Identity = 159/204 (77.94%), Postives = 165/204 (80.88%), Query Frame = 1


Query: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSK   L PFT+QISFPF LK SK LFS  GIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGS FEGG G+QDEPPAPPGTGFA ALE+KEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTK 179
           ERLAFTEKYEE                          KNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

[Close]

BLAST of Lsi09G001650.1 vs. NCBI nr
Match: gi|1009156044|ref|XP_015896036.1| (PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 191.8 bits (486), Expect = 1.1e-45
Identity = 118/221 (53.39%), Postives = 140/221 (63.35%), Query Frame = 1


Query: 1   MAFTSTLTATSSTSPLSSK---------PLSLPPFTHQ---ISFPFTLKPSKSLFSAEGI 60
           MA +S+L+AT ++ P SS          P S   FT     ISF  +L+P  S       
Sbjct: 1   MASSSSLSATRTSLPSSSSSSSSKFPFCPKSFSQFTSPQPIISFTHSLRPFPSKSK---- 60

Query: 61  GPALGL-----GLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPG 120
            P  GL     GL+V AQTL+FSGS FEGGFG++D+PP+PPG G  A ++DKEEPQCPPG
Sbjct: 61  -PLFGLTRTHKGLAVNAQTLDFSGSFFEGGFGSEDDPPSPPGPGLIA-VDDKEEPQCPPG 120

Query: 121 LRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGE 179
           LR+YETM VLRPDMSEDERLA T+KYEE                          +NKAGE
Sbjct: 121 LRQYETMAVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 180

[Close]

BLAST of Lsi09G001650.1 vs. NCBI nr
Match: gi|661884269|emb|CDP12186.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 188.7 bits (478), Expect = 9.0e-45
Identity = 113/198 (57.07%), Postives = 130/198 (65.66%), Query Frame = 1


Query: 12  STSPLSSKPLSLPP-----FTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFS 71
           S+S +SS  L+ P      FT  ++ PF  K  K L     I       LSVKAQTL+FS
Sbjct: 3   SSSLISSPSLNSPSPTVLSFTRSLNSPFP-KFHKPLHPLTKIPV-----LSVKAQTLDFS 62

Query: 72  GSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSEDERLAFT 131
           GS FEGG GA D+PP  PG+G AA +EDKEEPQCPPGLR+YETM VLRPDMSEDERL  T
Sbjct: 63  GSFFEGGLGADDDPPISPGSGIAA-VEDKEEPQCPPGLRQYETMAVLRPDMSEDERLTLT 122

Query: 132 EKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGI 179
           +KYEE                          KNKAGETNTYLDGI LLFTYFTKPESM +
Sbjct: 123 QKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESMEV 182

[Close]

BLAST of Lsi09G001650.1 vs. NCBI nr
Match: gi|823214109|ref|XP_012439803.1| (PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Gossypium raimondii])

HSP 1 Score: 186.4 bits (472), Expect = 4.5e-44
Identity = 115/204 (56.37%), Postives = 133/204 (65.20%), Query Frame = 1


Query: 11  SSTSPLSSKPLS---LPPFTHQ--ISFPFTLKPS----KSLFSAEGIG-PALGLGLSVKA 70
           S TS L++ P     LP F+    +SF  +LKP     KS+ S +    P+    L+VKA
Sbjct: 3   SPTSALTNSPFCPHLLPQFSPLPVLSFTHSLKPIPPKLKSMISLKRDNHPST---LTVKA 62

Query: 71  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 130
           QTL+FSGS FEGGFG+ D+PP+ PG+G   ALEDKEEPQCPPGLR+YETM VLRPDMSED
Sbjct: 63  QTLDFSGSFFEGGFGSDDDPPSQPGSGI-TALEDKEEPQCPPGLRQYETMAVLRPDMSED 122

Query: 131 ERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTK 179
           ERLA T+KYEE                          KNKAGETNTYLDGI LLFTYFTK
Sbjct: 123 ERLALTQKYEELLVAGGGMYIEVFNRGVIPLAYSIKKKNKAGETNTYLDGIYLLFTYFTK 182

[Close]

BLAST of Lsi09G001650.1 vs. NCBI nr
Match: gi|698586872|ref|XP_009779031.1| (PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic-like [Nicotiana sylvestris])

HSP 1 Score: 186.4 bits (472), Expect = 4.5e-44
Identity = 111/190 (58.42%), Postives = 122/190 (64.21%), Query Frame = 1


Query: 16  LSSKPLSLPPFTHQISF-PFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGF 75
           L+S P S  PF     F PFT  P  S  +A+ +  +    L VKAQTLEFSGS FE GF
Sbjct: 7   LTSTPSSFNPFLTLSHFHPFTTFPITS--NAKNVNHSC---LIVKAQTLEFSGSFFERGF 66

Query: 76  GAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSEDERLAFTEKYEE--- 135
           G  D+PP  PG+G   A+EDKEEPQCPPGLR YETM VLRPDMSEDERLA T+KYEE   
Sbjct: 67  GGDDDPPTAPGSGI-TAVEDKEEPQCPPGLRPYETMAVLRPDMSEDERLALTQKYEELLV 126

Query: 136 -----------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQAD 179
                                  KNKAGETNTYLDGI LLFTYFTKPESM  L+ATL  D
Sbjct: 127 AGGGMYVEVFNRGVIPLAYSIRRKNKAGETNTYLDGIYLLFTYFTKPESMTALEATLNTD 186

The following BLAST results are available for this feature:

BLAST of Lsi09G001650.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR6_ARATH	6.5e-43	51.46	30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana GN=RPS6 PE...	[more]
RR6_SPIOL	4.8e-38	54.71	30S ribosomal protein S6 alpha, chloroplastic (Fragment) OS=Spinacia oleracea GN...	[more]

BLAST of Lsi09G001650.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK24_CUCSA	1.4e-76	77.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G148810 PE=3 SV=1	[more]
A0A068UUY8_COFCA	6.3e-45	57.07	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035594001 PE=3 SV=1	[more]
A0A0D2Q1S9_GOSRA	3.1e-44	56.37	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G256400 PE=3 SV=1	[more]
A0A0B0PSF5_GOSAR	9.1e-44	58.60	30S ribosomal S6 alpha, chloroplastic-like protein OS=Gossypium arboreum GN=F383...	[more]
A0A061G6Q1_THECC	5.9e-43	54.23	Translation elongation factor EF1B/ribosomal protein S6 family protein OS=Theobr...	[more]

BLAST of Lsi09G001650.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G64510.1	3.6e-44	51.46	Translation elongation factor EF1B/ribosomal protein S6 family prot...	[more]

BLAST of Lsi09G001650.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778699334\|ref\|XP_011654693.1\|	2.0e-76	77.94	PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Cucumis sativus]	[more]
gi\|1009156044\|ref\|XP_015896036.1\|	1.1e-45	53.39	PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Ziziphus jujuba]	[more]
gi\|661884269\|emb\|CDP12186.1\|	9.0e-45	57.07	unnamed protein product [Coffea canephora]	[more]
gi\|823214109\|ref\|XP_012439803.1\|	4.5e-44	56.37	PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Gossypium raimondii]	[more]
gi\|698586872\|ref\|XP_009779031.1\|	4.5e-44	58.42	PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic-like [Nicotiana sylvest...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0019843	rRNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR014717	Transl_elong_EF1B/ribosomal_S6
IPR000529	Ribosomal_S6

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi09G001650	Lsi09G001650	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi09G001650.1.CDS.3	Lsi09G001650.1.CDS.3	CDS
Lsi09G001650.1.CDS.2	Lsi09G001650.1.CDS.2	CDS
Lsi09G001650.1.CDS.1	Lsi09G001650.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi09G001650.1	Lsi09G001650.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000529	Ribosomal protein S6	unknown	SSF54995	Ribosomal protein S6	coord: 104..178 score: 1.
IPR014717	Translation elongation factor EF1B/ribosomal protein S6	GENE3D	G3DSA:3.30.70.60		coord: 105..131 score: 6.
None	No IPR available	PANTHER	PTHR21011	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6	coord: 55..178 score: 2.8
None	No IPR available	PANTHER	PTHR21011:SF1	28S RIBOSOMAL PROTEIN S6, MITOCHONDRIAL	coord: 55..178 score: 2.8