Lsi09G001650 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G001650
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description30S ribosomal S6 alpha, chloroplastic-like protein
Locationchr09 : 1712651 .. 1717275 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTTCACTTCCACTCTCACCGCTACTTCTTCAACCTCTCCTCTCTCCTCCAAGCCCCTTTCCCTTCCCCCATTCACGCATCAAATTTCTTTCCCCTTTACCCTCAAACCCTCCAAATCCCTCTTTTCTGCCGAAGGAATCGGCCCTGCTTTGGGTCTCGGATTGTCCGTGAAAGCCCAAACTCTTGAATTTTCAGGTTCGCTCTTCGAAGGGGGGTTCGGAGCTCAGGATGAACCGCCTGCCCCTCCAGGAACAGGATTCGCCGCTGCCCTCGAAGATAAGGAGGAGCCTCAGTGCCCTCCTGGACTTCGAAAGTACGAGACTATGGTGGTTTTGAGGCCCGACATGTCTGAAGACGAGAGACTCGCTTTCACCGAGAAATACGAAGAGGTAGTATCGTCTCTGAAATGTTGCTACTGTGCTGTTGCCTTTTCCCCCTTCTGTAATTTTTCTTTGGTTTCTGAGGAAAAGAGAGAGACCAAAGGAAAACCGAAATTTGTTTAGACTAGTTTCATATGTGAGAGAGAATTCAGTTTGTTTCTCTGTTTAAATTGGGTTTAAGATCACATACTCCTTGTGGCCTTCCTGAGAAACCACTTGCGATGTAATGAGGTGGGAGATTGTCATTGTCTGAATCAGAACACATTATTCAAGTAATGGATAGCTCATGAAAACTTAGGCTGCAGTTTATGCAAACTAGTAGCTTTTATGGGAATGCTGTTGAAAAAATTATAATATACGAGTTTTCCTGTATTCTCTGTTTGAGTGTTTGGTTCCCAAGAAGTGAGAACCTTTTGTCGTGTCAGCCTTCTAAGTCCTCTGGAGACAGTAGTTTTAAGAATTTCACATTGGAAAGATGGAGACACATGAGCCACTCTTCTTGTTGCAAATTGATTTTGAGATGTAACTCTATGCTTATCTAATATAGTATCCAAAGTCCAATCGAGTATTTGGTATAAAAAAAGGATTTGACCCAAGAATGAGTGAACCTAAAGAAGCACCATCTTAAAGGGGCATATTGAGGATTATAATTGGAAAGATGGAGAGATATATGTGTTACTTCTTTCTTTGGCAATTGGTTTTGAGATGTAACTTTATGTCATCTAATAGGTAGGTAGGGACGAGATGGATTATTTTATTTCTTTGAGGAATATTTTCTATTGAACTTTAGGGATGTTTGACCATCAATAAACGTGAGTTTAGAACCCTAAGTTAGGAAGGTTGGGTTTGTATAACCTATGTATTCTGGAAAGGAATCGGTGTTTGGAAATTTGAGTTTGTGTAACTTGTAATTGGTGGGGAGTTCAGATTTTTTCTTTCTTTTTCTTTTTCTTTTTATTTTGTTAGTCTAGATTCGTGAAATATAACTTTATGTAGTTTGTAAGATTAGCAAACTTATAGTTTGGAATAAGCAAATCAACATTTTAAACTCTTCAGTCTAATCTCATGTTACGCAAATTTAATCCACGAACCAACTTCTAGTGCTTGAAAAAATATATTGGAGTGTCAAACAAATTTGATGTGGAGGGGCACTAGCTGATTTGTTGTAAATAGGACAGTGGCAGCATTGAGACCATATTTATGAGAGAACATTCAAGAAAGGCAGGAAAGAGATGAAGCCTGTTAGGATTGACTTTCTAAGTGTTTATAAACACTTTTTTGCACTTATAAACACTTAGAAAGTCAATCAAAACGCACTTGATAGTTAACATGCATTTTTGAAGCAAAGTTGCCTGAATGGGCAATTTATTTCTTATGGGAACTGTTTGCTTGTTATATTCCCTACAAGTATGCACTCCTTATCATGAAAACATTGAGTGGAATACAAAGAACTTTTTTCTTTTGTTTTTTCGATGAGTGTATATTGTTAATTGTGAGAAATTCTCCCCTTGATATAAGTAAAATTCTGGTTGTGGAGTAAAGTTACGAACTGGGGATTTATATACTGTAAGCTGATGATCTTAGTTGATTGAATGATTTCGGTCTTGACTAAAGCATAACTTTTTCTTTCTTATTTATTAAGAGGTAATTTAGCTTTATATAAGCAAATGATTCTTTGGTGAAGGGACAATCGAGTTAGCTTTGTTTTCTTTCTTAGAACTCAAGGACACAGTTGTACAACCTATAGAACAGATCCTGTTCAAGTAACGTCGTTAGTTTTGTTTTCTTTCAACATAGTGTTGATAAGAATGGCCTATTTTGCAGTTGCTTGTTGCTGGGGGTGCCATGTATGTTGAAGTATTCCACAAAGGTCTCATTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACTAACACTTACTTGGATGGCATCAATCTCCTCTTCACCTACTTCACAAAACCCGAATCAATGGGAATTCTCGACGCAACACTTCAAGCAGATGACGATGTTGTTCGATCAATGAGTTTCAAGGTAAGGAAACGAAAATACTAAGTATGCCTTAGCGGTAAATTTCTTGGTCTTTCACATCATCTTTTGGACAATTTTATTCAAAGCAATGGAAAAGATGTGTAGTTGCAATTTGTGCTTTTCATTTTCAAAATGAGTGCTGCTATTGTGACAACTCTATGGCCATTTAGGCTTTATCCATAACCATCTGATTGCTGTTCTTTTCATTACAGCCTTCCAATGGAAGTGCTATATGAAGTTGGAAAAAAGTTAGATAGAGAAAAAGGAATTTAGATTATATGTTGATCTTTCATAGCTGGAAAATCCACTTAGTGACTGAACTTTTTTTTTAATGATCCACCAATGAGTGTCCTGTTCTATCAATCAAGCAACACACTCCGTTGAAAGTGCATTTGGATTCAAAAGAAATAGAAAGATAAGTACGAGCATGGAGTACTAGGTAGAAGTTGAGGGGTTGTCTTCAAAATTATTATTACTTTTTTTATGGTTTTTTTTTCTTTTAAAGTTCTGGTCCAATGAATGGTAAAAGTTAATGTCATTGTTAGAGTTGAAATTATTAGTTACAAATTTGTTATTGTGAAAGGAACAAGCTCGTTTATTTTTTAGAAAAATGTCTTTTCGTCTCTAAGTTTTGAGCATAGTTTTTGTATGTTCCTTATGTTTTAAAATATTACATTTGTATTTCAGAGTTTTTAATTTTTTTTAATTTCTAGGATTCAACATTTTTATTTGGTATTTAAGTTTTAGGATTTTACACTTTTATCTTTAGAGTTTTACTTTTAGTTATTGGTGTTAGTTATTGGCGTTGACTTTTGGTAAAATAATTTGTCTTTTAATTGAAAGAAAACCATGCTATTTTTTTTTAATGGAAAGTTACCGTTAGTTGAAGAAGTTTTTACTTGCTATAATAAAATCAATTTACAAAATAGAAAAATGTTATGAAAGCAACTTTCAAGCAAACTTTGATGTCACGTCATATATTTTTATTGTAATGATGAGAACTTCAAACCGTAAATATCACTTTTCGATAATGCTTCGAACATATTCTTTGCTTTATCTTTTTCATTATTATTTGGGCTCGGTCAATTATGGAAGGATGGTTCCTTAAGATTTTTATTTTAATAAAATTACAAAAATGAGGGATAATGCGACTTTAATTTTTATTATTAGAAAAACTTTTACAAATAAAAAAAATGTCAAACTATTTACATAAAATAGTAAAAAAATACTGATAGACTTCTATTAAGTCTATCACAACTATTTAAAAATTTTGCTATTTTGTGTAAATAATTTACCTTATTTTTCTGTTTTTAAAACTTCCTTTTTTTTATTATTGTATTAAAGAGAAAAAAACAACATATATTTTGCCTAATTTGGTTGAAAGAGAAAAAAGGTTGATTAACTAAACTCAGTTTTTTTTAGTCGATAAATGTAGGATTGTAAGATCGAATCCTTAACTTAATGAAAGATATATCAAAAGAAAGTTACGAAAGATAATAGGTATTATTTATTAAAGAATTGACGACTATACTACGAGTTTAGCAGTGAAGAAATTGCAACTAAAAATGTAATTGCATAGGTTATAGATTGCAAAATGTATGGTAATGGATGATAACTATGATTATTTAAATTGACAATTAGATTAAAACTGCTGTAAATCCAATATTCTTACTACCATTGACTTATTATTATTGTTTTTTTTTTTTTTTACAATTATGTGGTATGCGAGAATCAAATTTTTAACGTCAAAATTTTGATAGTACAAGTACTATATTAGCTGAGCTATCTTCATTTTGGCATCATTTTTATTTTTTAGTAAACTATCATTGACTTATAAAGTGATTAATGGCCAAGATGAATATAACTTAGTTGTAATTGACATTTTTTCTTTTGAGGTTAAAAGATTCAAATTCACATTCATTTTACTTAAAAAAAAAAAAAAAAGTAATTAAGTTTATTAAAATGAATTCTAGAAAATATTTTATTTGCAAGTGCTTTTACAAAATTATGTATATTTCCTATATATATATACAAGAATGCTACCTAATAAAAATTTACTTACAAAATATGTCTATTTATATAAACTGAAACAATACCATTCAATGACAAACTTGGAATGACTTACAACAAGTGATTTTTCTTTCCAGAAAATTTTCTTTCCAATTTGTTTCTAGTCATACTGGCAAATGTCTAGAAATCGA

mRNA sequence

ATGGCCTTCACTTCCACTCTCACCGCTACTTCTTCAACCTCTCCTCTCTCCTCCAAGCCCCTTTCCCTTCCCCCATTCACGCATCAAATTTCTTTCCCCTTTACCCTCAAACCCTCCAAATCCCTCTTTTCTGCCGAAGGAATCGGCCCTGCTTTGGGTCTCGGATTGTCCGTGAAAGCCCAAACTCTTGAATTTTCAGGTTCGCTCTTCGAAGGGGGGTTCGGAGCTCAGGATGAACCGCCTGCCCCTCCAGGAACAGGATTCGCCGCTGCCCTCGAAGATAAGGAGGAGCCTCAGTGCCCTCCTGGACTTCGAAAGTACGAGACTATGGTGGTTTTGAGGCCCGACATGTCTGAAGACGAGAGACTCGCTTTCACCGAGAAATACGAAGAGAAAAACAAAGCTGGTGAAACTAACACTTACTTGGATGGCATCAATCTCCTCTTCACCTACTTCACAAAACCCGAATCAATGGGAATTCTCGACGCAACACTTCAAGCAGATGACGATGTTGTTCGATCAATGAGTTTCAAGTCATACTGGCAAATGTCTAGAAATCGA

Coding sequence (CDS)

ATGGCCTTCACTTCCACTCTCACCGCTACTTCTTCAACCTCTCCTCTCTCCTCCAAGCCCCTTTCCCTTCCCCCATTCACGCATCAAATTTCTTTCCCCTTTACCCTCAAACCCTCCAAATCCCTCTTTTCTGCCGAAGGAATCGGCCCTGCTTTGGGTCTCGGATTGTCCGTGAAAGCCCAAACTCTTGAATTTTCAGGTTCGCTCTTCGAAGGGGGGTTCGGAGCTCAGGATGAACCGCCTGCCCCTCCAGGAACAGGATTCGCCGCTGCCCTCGAAGATAAGGAGGAGCCTCAGTGCCCTCCTGGACTTCGAAAGTACGAGACTATGGTGGTTTTGAGGCCCGACATGTCTGAAGACGAGAGACTCGCTTTCACCGAGAAATACGAAGAGAAAAACAAAGCTGGTGAAACTAACACTTACTTGGATGGCATCAATCTCCTCTTCACCTACTTCACAAAACCCGAATCAATGGGAATTCTCGACGCAACACTTCAAGCAGATGACGATGTTGTTCGATCAATGAGTTTCAAGTCATACTGGCAAATGTCTAGAAATCGA

Protein sequence

MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSEDERLAFTEKYEEKNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRSMSFKSYWQMSRNR
Homology
[Close]
BLAST of Lsi09G001650 vs. Swiss-Prot
Match: RR6_ARATH (30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana GN=RPS6 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.5e-43
Identity = 106/206 (51.46%), Postives = 127/206 (61.65%), Query Frame = 1 

Query: 4   TSTLTATSSTSPL---SSKPLSLPPFTHQISFPFTLKP--SKSLFSAEGIGPALGLGLSV 63
           +S   + S+  PL   SS+PL        +SF  +L+P  SKS      I    G    V
Sbjct: 3   SSLCVSNSTICPLPNVSSQPL--------LSFSHSLRPFISKSKPMCASIQKRDGSQFVV 62

Query: 64  KAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMS 123
           K+Q L+FSG+ FEGGFG+ D+P +P G+G + ALEDK EPQCPPGLR+YETM VLRPDMS
Sbjct: 63  KSQALDFSGTFFEGGFGSDDDPTSPSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMS 122

Query: 124 EDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYF 179
           EDERL  T+KYEE                          KNKAGETNTYLDGI LLFTYF
Sbjct: 123 EDERLGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYF 182

[Close]
BLAST of Lsi09G001650 vs. Swiss-Prot
Match: RR6_SPIOL (30S ribosomal protein S6 alpha, chloroplastic (Fragment) OS=Spinacia oleracea GN=RPS6 PE=1 SV=2)

HSP 1 Score: 159.1 bits (401), Expect = 4.8e-38
Identity = 93/170 (54.71%), Postives = 106/170 (62.35%), Query Frame = 1 

Query: 36  LKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDE-PPAPPGTGFAAALED 95
           LKPS+  + +         G  VKA  L+FSGS FEGGFG  DE PP+ P  G A  +E+
Sbjct: 2   LKPSRHHYLSN-------YGPYVKAIALDFSGSFFEGGFGGLDEDPPSTPPAGLA--VEE 61

Query: 96  KEEPQCPPGLRKYETMVVLRPDMSEDERLAFTEKYEE----------------------- 155
           K EPQCPPGLR+YETM VLRPDM+EDERL  T+KYEE                       
Sbjct: 62  KPEPQCPPGLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYS 121

Query: 156 ---KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRSMSFK 179
              KNKAGETN YLDGI LLFTYFTKPES+  L+A L  DDDV+RS SFK
Sbjct: 122 IKRKNKAGETNNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFK 162

[Close]
BLAST of Lsi09G001650 vs. TrEMBL
Match: A0A0A0KK24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G148810 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.4e-76
Identity = 159/204 (77.94%), Postives = 165/204 (80.88%), Query Frame = 1 

Query: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSK   L PFT+QISFPF LK SK LFS  GIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGS FEGG G+QDEPPAPPGTGFA ALE+KEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTK 179
           ERLAFTEKYEE                          KNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

[Close]
BLAST of Lsi09G001650 vs. TrEMBL
Match: A0A068UUY8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035594001 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 6.3e-45
Identity = 113/198 (57.07%), Postives = 130/198 (65.66%), Query Frame = 1 

Query: 12  STSPLSSKPLSLPP-----FTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFS 71
           S+S +SS  L+ P      FT  ++ PF  K  K L     I       LSVKAQTL+FS
Sbjct: 3   SSSLISSPSLNSPSPTVLSFTRSLNSPFP-KFHKPLHPLTKIPV-----LSVKAQTLDFS 62

Query: 72  GSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSEDERLAFT 131
           GS FEGG GA D+PP  PG+G AA +EDKEEPQCPPGLR+YETM VLRPDMSEDERL  T
Sbjct: 63  GSFFEGGLGADDDPPISPGSGIAA-VEDKEEPQCPPGLRQYETMAVLRPDMSEDERLTLT 122

Query: 132 EKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGI 179
           +KYEE                          KNKAGETNTYLDGI LLFTYFTKPESM +
Sbjct: 123 QKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESMEV 182

[Close]
BLAST of Lsi09G001650 vs. TrEMBL
Match: A0A0D2Q1S9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G256400 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.1e-44
Identity = 115/204 (56.37%), Postives = 133/204 (65.20%), Query Frame = 1 

Query: 11  SSTSPLSSKPLS---LPPFTHQ--ISFPFTLKPS----KSLFSAEGIG-PALGLGLSVKA 70
           S TS L++ P     LP F+    +SF  +LKP     KS+ S +    P+    L+VKA
Sbjct: 3   SPTSALTNSPFCPHLLPQFSPLPVLSFTHSLKPIPPKLKSMISLKRDNHPST---LTVKA 62

Query: 71  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 130
           QTL+FSGS FEGGFG+ D+PP+ PG+G   ALEDKEEPQCPPGLR+YETM VLRPDMSED
Sbjct: 63  QTLDFSGSFFEGGFGSDDDPPSQPGSGI-TALEDKEEPQCPPGLRQYETMAVLRPDMSED 122

Query: 131 ERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTK 179
           ERLA T+KYEE                          KNKAGETNTYLDGI LLFTYFTK
Sbjct: 123 ERLALTQKYEELLVAGGGMYIEVFNRGVIPLAYSIKKKNKAGETNTYLDGIYLLFTYFTK 182

[Close]
BLAST of Lsi09G001650 vs. TrEMBL
Match: A0A0B0PSF5_GOSAR (30S ribosomal S6 alpha, chloroplastic-like protein OS=Gossypium arboreum GN=F383_05526 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 9.1e-44
Identity = 109/186 (58.60%), Postives = 122/186 (65.59%), Query Frame = 1 

Query: 20  PLSLPPFTHQI-SFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQD 79
           PL +  FTH + S P  LK   SL       P+    L+VKAQTL+FSGS FEGGFG+ D
Sbjct: 23  PLPVLSFTHSLKSIPPKLKSLISL--KRDNHPST---LTVKAQTLDFSGSFFEGGFGSDD 82

Query: 80  EPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSEDERLAFTEKYEE------- 139
           +PP+ PG+G   ALEDKEEPQCPPGLR+YETM VLRPDMSEDERLA T+KYEE       
Sbjct: 83  DPPSQPGSGI-TALEDKEEPQCPPGLRQYETMAVLRPDMSEDERLALTQKYEELLVAGGG 142

Query: 140 -------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVV 179
                              KNKAGETN YLDGI LLFTYFTKPESM  L+A L  DDDV+
Sbjct: 143 MYIEVFNRGVIPLAYSIKKKNKAGETNAYLDGIYLLFTYFTKPESMTALEAALNTDDDVI 202

[Close]
BLAST of Lsi09G001650 vs. TrEMBL
Match: A0A061G6Q1_THECC (Translation elongation factor EF1B/ribosomal protein S6 family protein OS=Theobroma cacao GN=TCM_016508 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.9e-43
Identity = 109/201 (54.23%), Postives = 130/201 (64.68%), Query Frame = 1 

Query: 8   TATSSTSPLSSKPLSLPPFTHQISFPFTLKP----SKSLFSAEGIGPALGLGLSVKAQTL 67
           T++ + SP   + L+  P    +SF  +LKP    SKSL S +         ++VKA+TL
Sbjct: 135 TSSLTKSPFCPQHLTQFPPLPFLSFTHSLKPIPKKSKSLTSLKRGNFTT---VTVKARTL 194

Query: 68  EFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSEDERL 127
           +FSGS FEGGFG+ D+PP+ PG+G   ALEDKEEPQCPPGLR+YETM+VLRPDMSEDERL
Sbjct: 195 DFSGSFFEGGFGSDDDPPSQPGSGI-TALEDKEEPQCPPGLRQYETMMVLRPDMSEDERL 254

Query: 128 AFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPES 179
           A T+KYEE                          KNKAGETNTYLDGI LLFTYF KPES
Sbjct: 255 ALTQKYEELLVAGGGMYVEVFNRGVVPLAYSIKKKNKAGETNTYLDGIYLLFTYFMKPES 314

[Close]
BLAST of Lsi09G001650 vs. TAIR10
Match: AT1G64510.1 (AT1G64510.1 Translation elongation factor EF1B/ribosomal protein S6 family protein)

HSP 1 Score: 175.3 bits (443), Expect = 3.6e-44
Identity = 106/206 (51.46%), Postives = 127/206 (61.65%), Query Frame = 1 

Query: 4   TSTLTATSSTSPL---SSKPLSLPPFTHQISFPFTLKP--SKSLFSAEGIGPALGLGLSV 63
           +S   + S+  PL   SS+PL        +SF  +L+P  SKS      I    G    V
Sbjct: 3   SSLCVSNSTICPLPNVSSQPL--------LSFSHSLRPFISKSKPMCASIQKRDGSQFVV 62

Query: 64  KAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMS 123
           K+Q L+FSG+ FEGGFG+ D+P +P G+G + ALEDK EPQCPPGLR+YETM VLRPDMS
Sbjct: 63  KSQALDFSGTFFEGGFGSDDDPTSPSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMS 122

Query: 124 EDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYF 179
           EDERL  T+KYEE                          KNKAGETNTYLDGI LLFTYF
Sbjct: 123 EDERLGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYF 182

[Close]
BLAST of Lsi09G001650 vs. NCBI nr
Match: gi|778699334|ref|XP_011654693.1| (PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 2.0e-76
Identity = 159/204 (77.94%), Postives = 165/204 (80.88%), Query Frame = 1 

Query: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSK   L PFT+QISFPF LK SK LFS  GIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGS FEGG G+QDEPPAPPGTGFA ALE+KEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTK 179
           ERLAFTEKYEE                          KNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

[Close]
BLAST of Lsi09G001650 vs. NCBI nr
Match: gi|1009156044|ref|XP_015896036.1| (PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 191.8 bits (486), Expect = 1.1e-45
Identity = 118/221 (53.39%), Postives = 140/221 (63.35%), Query Frame = 1 

Query: 1   MAFTSTLTATSSTSPLSSK---------PLSLPPFTHQ---ISFPFTLKPSKSLFSAEGI 60
           MA +S+L+AT ++ P SS          P S   FT     ISF  +L+P  S       
Sbjct: 1   MASSSSLSATRTSLPSSSSSSSSKFPFCPKSFSQFTSPQPIISFTHSLRPFPSKSK---- 60

Query: 61  GPALGL-----GLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPG 120
            P  GL     GL+V AQTL+FSGS FEGGFG++D+PP+PPG G  A ++DKEEPQCPPG
Sbjct: 61  -PLFGLTRTHKGLAVNAQTLDFSGSFFEGGFGSEDDPPSPPGPGLIA-VDDKEEPQCPPG 120

Query: 121 LRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGE 179
           LR+YETM VLRPDMSEDERLA T+KYEE                          +NKAGE
Sbjct: 121 LRQYETMAVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 180

[Close]
BLAST of Lsi09G001650 vs. NCBI nr
Match: gi|661884269|emb|CDP12186.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 188.7 bits (478), Expect = 9.0e-45
Identity = 113/198 (57.07%), Postives = 130/198 (65.66%), Query Frame = 1 

Query: 12  STSPLSSKPLSLPP-----FTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFS 71
           S+S +SS  L+ P      FT  ++ PF  K  K L     I       LSVKAQTL+FS
Sbjct: 3   SSSLISSPSLNSPSPTVLSFTRSLNSPFP-KFHKPLHPLTKIPV-----LSVKAQTLDFS 62

Query: 72  GSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSEDERLAFT 131
           GS FEGG GA D+PP  PG+G AA +EDKEEPQCPPGLR+YETM VLRPDMSEDERL  T
Sbjct: 63  GSFFEGGLGADDDPPISPGSGIAA-VEDKEEPQCPPGLRQYETMAVLRPDMSEDERLTLT 122

Query: 132 EKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGI 179
           +KYEE                          KNKAGETNTYLDGI LLFTYFTKPESM +
Sbjct: 123 QKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESMEV 182

[Close]
BLAST of Lsi09G001650 vs. NCBI nr
Match: gi|823214109|ref|XP_012439803.1| (PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Gossypium raimondii])

HSP 1 Score: 186.4 bits (472), Expect = 4.5e-44
Identity = 115/204 (56.37%), Postives = 133/204 (65.20%), Query Frame = 1 

Query: 11  SSTSPLSSKPLS---LPPFTHQ--ISFPFTLKPS----KSLFSAEGIG-PALGLGLSVKA 70
           S TS L++ P     LP F+    +SF  +LKP     KS+ S +    P+    L+VKA
Sbjct: 3   SPTSALTNSPFCPHLLPQFSPLPVLSFTHSLKPIPPKLKSMISLKRDNHPST---LTVKA 62

Query: 71  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 130
           QTL+FSGS FEGGFG+ D+PP+ PG+G   ALEDKEEPQCPPGLR+YETM VLRPDMSED
Sbjct: 63  QTLDFSGSFFEGGFGSDDDPPSQPGSGI-TALEDKEEPQCPPGLRQYETMAVLRPDMSED 122

Query: 131 ERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTK 179
           ERLA T+KYEE                          KNKAGETNTYLDGI LLFTYFTK
Sbjct: 123 ERLALTQKYEELLVAGGGMYIEVFNRGVIPLAYSIKKKNKAGETNTYLDGIYLLFTYFTK 182

[Close]
BLAST of Lsi09G001650 vs. NCBI nr
Match: gi|698586872|ref|XP_009779031.1| (PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic-like [Nicotiana sylvestris])

HSP 1 Score: 186.4 bits (472), Expect = 4.5e-44
Identity = 111/190 (58.42%), Postives = 122/190 (64.21%), Query Frame = 1 

Query: 16  LSSKPLSLPPFTHQISF-PFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGF 75
           L+S P S  PF     F PFT  P  S  +A+ +  +    L VKAQTLEFSGS FE GF
Sbjct: 7   LTSTPSSFNPFLTLSHFHPFTTFPITS--NAKNVNHSC---LIVKAQTLEFSGSFFERGF 66

Query: 76  GAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSEDERLAFTEKYEE--- 135
           G  D+PP  PG+G   A+EDKEEPQCPPGLR YETM VLRPDMSEDERLA T+KYEE   
Sbjct: 67  GGDDDPPTAPGSGI-TAVEDKEEPQCPPGLRPYETMAVLRPDMSEDERLALTQKYEELLV 126

Query: 136 -----------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQAD 179
                                  KNKAGETNTYLDGI LLFTYFTKPESM  L+ATL  D
Sbjct: 127 AGGGMYVEVFNRGVIPLAYSIRRKNKAGETNTYLDGIYLLFTYFTKPESMTALEATLNTD 186

The following BLAST results are available for this feature:
BLAST of Lsi09G001650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR6_ARATH6.5e-4351.4630S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana GN=RPS6 PE... [more]
RR6_SPIOL4.8e-3854.7130S ribosomal protein S6 alpha, chloroplastic (Fragment) OS=Spinacia oleracea GN... [more]
BLAST of Lsi09G001650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK24_CUCSA1.4e-7677.94Uncharacterized protein OS=Cucumis sativus GN=Csa_5G148810 PE=3 SV=1[more]
A0A068UUY8_COFCA6.3e-4557.07Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035594001 PE=3 SV=1[more]
A0A0D2Q1S9_GOSRA3.1e-4456.37Uncharacterized protein OS=Gossypium raimondii GN=B456_008G256400 PE=3 SV=1[more]
A0A0B0PSF5_GOSAR9.1e-4458.6030S ribosomal S6 alpha, chloroplastic-like protein OS=Gossypium arboreum GN=F383... [more]
A0A061G6Q1_THECC5.9e-4354.23Translation elongation factor EF1B/ribosomal protein S6 family protein OS=Theobr... [more]
BLAST of Lsi09G001650 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G64510.13.6e-4451.46 Translation elongation factor EF1B/ribosomal protein S6 family prot... [more]
BLAST of Lsi09G001650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778699334|ref|XP_011654693.1|2.0e-7677.94PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Cucumis sativus][more]
gi|1009156044|ref|XP_015896036.1|1.1e-4553.39PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Ziziphus jujuba][more]
gi|661884269|emb|CDP12186.1|9.0e-4557.07unnamed protein product [Coffea canephora][more]
gi|823214109|ref|XP_012439803.1|4.5e-4456.37PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Gossypium raimondii][more]
gi|698586872|ref|XP_009779031.1|4.5e-4458.42PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic-like [Nicotiana sylvest... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0019843rRNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR014717Transl_elong_EF1B/ribosomal_S6
IPR000529Ribosomal_S6
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0010027 thylakoid membrane organization
cellular_component GO:0005840 ribosome
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0009579 thylakoid
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003746 translation elongation factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G001650.1Lsi09G001650.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000529Ribosomal protein S6unknownSSF54995Ribosomal protein S6coord: 104..178
score: 1.
IPR014717Translation elongation factor EF1B/ribosomal protein S6GENE3DG3DSA:3.30.70.60coord: 105..131
score: 6.
NoneNo IPR availablePANTHERPTHR21011MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6coord: 55..178
score: 2.8
NoneNo IPR availablePANTHERPTHR21011:SF128S RIBOSOMAL PROTEIN S6, MITOCHONDRIALcoord: 55..178
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G001650Csa5G148810Cucumber (Chinese Long) v2culsiB322
Lsi09G001650CSPI05G04560Wild cucumber (PI 183967)cpilsiB322
Lsi09G001650Cucsa.303980Cucumber (Gy14) v1cgylsiB487
Lsi09G001650CmaCh15G012880Cucurbita maxima (Rimu)cmalsiB267
Lsi09G001650CmaCh02G009190Cucurbita maxima (Rimu)cmalsiB535
Lsi09G001650CmoCh15G013590Cucurbita moschata (Rifu)cmolsiB255
Lsi09G001650CmoCh02G009270Cucurbita moschata (Rifu)cmolsiB521
Lsi09G001650Cla011359Watermelon (97103) v1lsiwmB027
Lsi09G001650MELO3C005759Melon (DHL92) v3.5.1lsimeB012
Lsi09G001650ClCG01G001790Watermelon (Charleston Gray)lsiwcgB008
Lsi09G001650MELO3C005759.2Melon (DHL92) v3.6.1lsimedB012
Lsi09G001650Cla97C01G001830Watermelon (97103) v2lsiwmbB007
Lsi09G001650Cp4.1LG05g07870Cucurbita pepo (Zucchini)cpelsiB578
Lsi09G001650Cp4.1LG13g00990Cucurbita pepo (Zucchini)cpelsiB131
Lsi09G001650CsGy5G001810Cucumber (Gy14) v2cgyblsiB294
Lsi09G001650Carg21285Silver-seed gourdcarlsiB327
Lsi09G001650Carg08554Silver-seed gourdcarlsiB646
Lsi09G001650CsaV3_5G001930Cucumber (Chinese Long) v3cuclsiB345
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G001650Bottle gourd (USVL1VR-Ls)lsilsiB020
Lsi09G001650Cucurbita maxima (Rimu)cmalsiB300
Lsi09G001650Cucurbita maxima (Rimu)cmalsiB624
Lsi09G001650Cucurbita moschata (Rifu)cmolsiB288
Lsi09G001650Cucurbita moschata (Rifu)cmolsiB611
Lsi09G001650Wild cucumber (PI 183967)cpilsiB244
Lsi09G001650Cucumber (Chinese Long) v2culsiB245
Lsi09G001650Melon (DHL92) v3.5.1lsimeB038
Lsi09G001650Cucumber (Gy14) v2cgyblsiB231
Lsi09G001650Melon (DHL92) v3.6.1lsimedB041
Lsi09G001650Silver-seed gourdcarlsiB038
Lsi09G001650Cucumber (Chinese Long) v3cuclsiB267
Lsi09G001650Wax gourdlsiwgoB008
Lsi09G001650Wax gourdlsiwgoB047