Carg08554 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08554
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ribosomal protein S6 family protein
Location	Cucurbita_argyrosperma_scaffold_022 : 1002896 .. 1005308 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAAATCAACCCAGCCGAAGTGCTTCGTACCCTCATGAACGTGATATCGGCCTGCACAAAGGTCTACTACGGGTAGAGTCTTATCCATATCTATCTTCTTGCCACTGAATTTCCGAGTCTGCCTCAACAGCAGAACTCATTCAAATTAACATGGCCTTCACTTCCACTCTTACCGCTACTTCTTCAACCTCTCCCCTCTTCTCCAAACCCCTTTCCCTTCCTCAATTCACCCCTCACATTTCCTTGCCCTTTACCCTCAGATCCTCCAAATCCCTCTTTTCTCCCGACGGAATCGGCCCTGCTTTGGGACTCGGATTATCCGTGAAAGCCCAAACTCTTGAATTTTCAGGCTCGTTCTTCCAAGGTGGGTTCGGGACTGAGGATGAACCCCCTGCTTCTCCGGGGACAGGCTTCGCTGTTGACCTTGAAGATAAGGAGGAGCCTCAATGCCCTCCTGGACTTCGGAAGTACGAATCTATGGTGGTTCTGAGGCCTGACATGTCTGAAGATGAGAGACTCGCTCTCACCCAGAAATACGAAGAGGTAGTAACATTTGAAACGTTGGTACTTTCATGTTACCTTTCCCTTCCTCCTAAATTCTCTTTTGTCTATGAGTGAAAGAAAATGCATACGAAGGAAAAGTGAAAAGTTATAGGAGAACTTTTGTATCTGTGAGTTAAGTCAATTTGTTGCTGCGTTTCAATTTTGTTGAAGATTATATACTCCTTGTGGTCTTCCTGAGAAACCACTTGCAAATGAATGAGTTAAGAGCTTTACTGAATCAGAACATTTAGACTGTAGTTTTTACAAGCTAGTTGCTTTTATGGGAATGCTAACGAGTGCGTGTAAGTAGAATTTAGCTGGCGAGTTTAGAATTTAGAATTAGTTTGTAGTCTAAATTATGGGTTTTGTTAGTCTTGATTTGTATAATATAAATTAATGTTGCTTGTCAGATTAGCTAGCTTATCGTTTGGAATAGACAAATCAACATTTTGATCTCATGTTGCACAAAACTTATCCCGAACCAACTTTTTGTGCTTGAGAATATAGTTTGGTGTTGAACGACTTTGATGTGAAAGGCACTAGCTGATTTGTTGTAAAGATGATAGTGGCAGCGTGAGACCATATTTATGAGAGAACATTCAAGAAAGGCAGGAAAGAGATGAAAGTTACCATACAATTTTGGAAAAGTTGCATGATCCTAATTGCCACATAGTTGCTTGAATGGGCAGTTCATTTCTAAAAGGGAACTGTTTGCTTGTCATGTTCTTTACAAGTATGCACACCTTATCATGAAGACATTGGAATACAAAGTTTGTGCAAAAATTTTTTTATTGCTCTTTTGATGCATGTGTAATGTTATGATAAAAAAAAGTAATATCGATTTCATCTTTGTGAAAAATTTATTTTAGCTATCCTTGATATAAGTGGAGAATTCTGGTTGTCATGTTAAAGGTTTATGTGCTGTAAGCATAAACCAATGATTTTTTTGTAGTTTTTGTTTGTTTTTTATTTTCCCGTTCAACAAGTGGAGGTGGATATTTGAGCCTCTATCTCTTGGTGAAAAACGTATTCCTTAACTAGTTTGATTGTCTTCAAGTTGGCAATGATGATCTTAGTTGATTGAATAATTTTGGTCTTCGCTCTATATAAGCAAATGATTCTTTGGTCAAAGGGGCAATCATTGGTGGATGAGAGTGAAGCTAGTTTTGTTTTCTTTCCGCATAGTGTTTGATAAAGAATGGCCCATTTTTTTTGCAGTTGCTTGTTGCTGGGGGTGGCATGTATGTAGAGGTATTCCACAAAGGGGTGGTTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACAAACACTTACTTGGATGGAATCTCTCTCCTCTTCACCTACTTCACAAAACCCGAATCAATGGGAGTTCTCGAGGCAGCGCTTCAAGCAGACGACGACGTTGTTCGATCAATGAGTTTCAAGGTAAGGAAACGAAAGTACTAAGCATGGGATTGTAATAAAATTTGTTGGTCTTTTTTCACATCAATTTTATTCAAAGCAATGGAAGAGATGTTGTAGTTGCAGTTTGTGGTTTTCCTTTCCAGAATGAGTGCCTGCTATTGTGACAACTCTTTATGGCCATTTAGGCTTTTATCCATAACCATCTGATTGGTGCTGTGTTTATGAGAGGGCTTCCAATGGAAGTGCTGTTTGAAATAGGAAAAAGGTTGGATAGAGAAAAGAAAAGGAATGTAGATTAGATTTAGATTTAGATTTAGACGTTGATCTTTCATAGCTGGAAAATCCACTTAGTGACCGAGAACCTTTTTTAATGATCCACCAATCACTGTCCCGTTCTGTCAATCGATCAACACACTCCGTTCAAAGTGCATTTGGATTGAAAAGGAAAAAAGA

mRNA sequence

CCTAAATCAACCCAGCCGAAGTGCTTCGTACCCTCATGAACGTGATATCGGCCTGCACAAAGGTCTACTACGGGTAGAGTCTTATCCATATCTATCTTCTTGCCACTGAATTTCCGAGTCTGCCTCAACAGCAGAACTCATTCAAATTAACATGGCCTTCACTTCCACTCTTACCGCTACTTCTTCAACCTCTCCCCTCTTCTCCAAACCCCTTTCCCTTCCTCAATTCACCCCTCACATTTCCTTGCCCTTTACCCTCAGATCCTCCAAATCCCTCTTTTCTCCCGACGGAATCGGCCCTGCTTTGGGACTCGGATTATCCGTGAAAGCCCAAACTCTTGAATTTTCAGGCTCGTTCTTCCAAGGTGGGTTCGGGACTGAGGATGAACCCCCTGCTTCTCCGGGGACAGGCTTCGCTGTTGACCTTGAAGATAAGGAGGAGCCTCAATGCCCTCCTGGACTTCGGAAGTACGAATCTATGGTGGTTCTGAGGCCTGACATGTCTGAAGATGAGAGACTCGCTCTCACCCAGAAATACGAAGAGTTGCTTGTTGCTGGGGGTGGCATGTATGTAGAGGTATTCCACAAAGGGGTGGTTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACAAACACTTACTTGGATGGAATCTCTCTCCTCTTCACCTACTTCACAAAACCCGAATCAATGGGAGTTCTCGAGGCAGCGCTTCAAGCAGACGACGACGTTGTTCGATCAATGAGTTTCAAGGTAAGGAAACGAAAGTACTAAGCATGGGATTGTAATAAAATTTGTTGGTCTTTTTTCACATCAATTTTATTCAAAGCAATGGAAGAGATGTTGTAGTTGCAGTTTGTGGTTTTCCTTTCCAGAATGAGTGCCTGCTATTGTGACAACTCTTTATGGCCATTTAGGCTTTTATCCATAACCATCTGATTGGTGCTGTGTTTATGAGAGGGCTTCCAATGGAAGTGCTGTTTGAAATAGGAAAAAGGTTGGATAGAGAAAAGAAAAGGAATGTAGATTAGATTTAGATTTAGATTTAGACGTTGATCTTTCATAGCTGGAAAATCCACTTAGTGACCGAGAACCTTTTTTAATGATCCACCAATCACTGTCCCGTTCTGTCAATCGATCAACACACTCCGTTCAAAGTGCATTTGGATTGAAAAGGAAAAAAGA

Coding sequence (CDS)

ATGGCCTTCACTTCCACTCTTACCGCTACTTCTTCAACCTCTCCCCTCTTCTCCAAACCCCTTTCCCTTCCTCAATTCACCCCTCACATTTCCTTGCCCTTTACCCTCAGATCCTCCAAATCCCTCTTTTCTCCCGACGGAATCGGCCCTGCTTTGGGACTCGGATTATCCGTGAAAGCCCAAACTCTTGAATTTTCAGGCTCGTTCTTCCAAGGTGGGTTCGGGACTGAGGATGAACCCCCTGCTTCTCCGGGGACAGGCTTCGCTGTTGACCTTGAAGATAAGGAGGAGCCTCAATGCCCTCCTGGACTTCGGAAGTACGAATCTATGGTGGTTCTGAGGCCTGACATGTCTGAAGATGAGAGACTCGCTCTCACCCAGAAATACGAAGAGTTGCTTGTTGCTGGGGGTGGCATGTATGTAGAGGTATTCCACAAAGGGGTGGTTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACAAACACTTACTTGGATGGAATCTCTCTCCTCTTCACCTACTTCACAAAACCCGAATCAATGGGAGTTCTCGAGGCAGCGCTTCAAGCAGACGACGACGTTGTTCGATCAATGAGTTTCAAGGTAAGGAAACGAAAGTACTAA

Protein sequence

MAFTSTLTATSSTSPLFSKPLSLPQFTPHISLPFTLRSSKSLFSPDGIGPALGLGLSVKAQTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTKPESMGVLEAALQADDDVVRSMSFKVRKRKY

Homology

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BLAST of Carg08554 vs. NCBI nr
Match: XP_023534494.1 (30S ribosomal protein S6 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 407.9 bits (1047), Expect = 2.1e-110
Identity = 208/210 (99.05%), Postives = 208/210 (99.05%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLFSKPLSLPQFTPHISLPFTLRSSKSLFSPDGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPL SKPLSLPQFTPHIS PFTLRSSKSLFSPDGIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKPLSLPQFTPHISFPFTLRSSKSLFSPDGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120
           QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180
           ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK
Sbjct: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180

Query: 181 PESMGVLEAALQADDDVVRSMSFKVRKRKY 211
           PESMGVLEAALQADDDVVRSMSFKVRKRKY
Sbjct: 181 PESMGVLEAALQADDDVVRSMSFKVRKRKY 210

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BLAST of Carg08554 vs. NCBI nr
Match: XP_022958683.1 (30S ribosomal protein S6 alpha, chloroplastic [Cucurbita moschata])

HSP 1 Score: 405.2 bits (1040), Expect = 1.3e-109
Identity = 207/210 (98.57%), Postives = 207/210 (98.57%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLFSKPLSLPQFTPHISLPFTLRSSKSLFSPDGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPL SKPLSLPQFTPHIS PFTLRSSKSLFSPDGI PALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKPLSLPQFTPHISFPFTLRSSKSLFSPDGIDPALGLGLSVKA 60

Query: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120
           QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180
           ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK
Sbjct: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180

Query: 181 PESMGVLEAALQADDDVVRSMSFKVRKRKY 211
           PESMGVLEAALQADDDVVRSMSFKVRKRKY
Sbjct: 181 PESMGVLEAALQADDDVVRSMSFKVRKRKY 210

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BLAST of Carg08554 vs. NCBI nr
Match: XP_022996136.1 (30S ribosomal protein S6 alpha, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 399.4 bits (1025), Expect = 7.4e-108
Identity = 202/210 (96.19%), Postives = 204/210 (97.14%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLFSKPLSLPQFTPHISLPFTLRSSKSLFSPDGIGPALGLGLSVKA 60
           MAFTSTLTATSS SPL SKP SLPQFTPHIS PFTLRSSKSLFSPDGIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSASPLSSKPHSLPQFTPHISFPFTLRSSKSLFSPDGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120
           QTLEFSGSFFQGGFGTEDEPP SPGTGFA+DLEDKEEPQCPPGLRKYESMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFQGGFGTEDEPPTSPGTGFAIDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180
           ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK
Sbjct: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180

Query: 181 PESMGVLEAALQADDDVVRSMSFKVRKRKY 211
           PESMG+LEA LQADDDVVRSMSFKVRKRKY
Sbjct: 181 PESMGILEATLQADDDVVRSMSFKVRKRKY 210

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BLAST of Carg08554 vs. NCBI nr
Match: XP_022156008.1 (30S ribosomal protein S6 alpha, chloroplastic [Momordica charantia])

HSP 1 Score: 321.6 bits (823), Expect = 1.9e-84
Identity = 168/210 (80.00%), Postives = 181/210 (86.19%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLFSKPLSLPQFTPHISLPFTLRSSKSLFSPDGIGPALGLGLSVKA 60
           MAF STLTATSSTSPL SK L LPQFT  IS    LR SKSLF P GI P        KA
Sbjct: 1   MAFASTLTATSSTSPLSSKSLFLPQFTHQIS----LRPSKSLFFPHGIAPP-------KA 60

Query: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120
           QTLEFSGSFF+ GFG+ED+PP+ PGTGFA  +EDKEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFESGFGSEDDPPSPPGTGFAAAIEDKEEPQCPPGLRKYETMVVLRPDMSED 120

Query: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180
           +RLALTQKYEELLVAGGGMY+EVF++GV+PLAYSIKKKNKAGETNTYLDGI LLFTYFTK
Sbjct: 121 DRLALTQKYEELLVAGGGMYLEVFNRGVIPLAYSIKKKNKAGETNTYLDGIYLLFTYFTK 180

Query: 181 PESMGVLEAALQADDDVVRSMSFKVRKRKY 211
           PESMG+LE  LQA+DDVVRSMSFKVRKRKY
Sbjct: 181 PESMGILEETLQAEDDVVRSMSFKVRKRKY 199

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BLAST of Carg08554 vs. NCBI nr
Match: XP_023549667.1 (30S ribosomal protein S6 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.0 bits (811), Expect = 4.8e-83
Identity = 165/210 (78.57%), Postives = 177/210 (84.29%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLFSKPLSLPQFTPHISLPFTLRSSKSLFSPDGIGPALGLGLSVKA 60
           MAFTSTL   SS+S             P +  PFTL  SK LF P+ I P+LGL LSVKA
Sbjct: 38  MAFTSTLITASSSS-------------PSLLFPFTLTPSKPLFPPNPIAPSLGLRLSVKA 97

Query: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120
           QTLEFSGSFF+GGFG EDEPPA PGTGFA  LEDKEE QCPPGLRKYESMV+LRPDMSED
Sbjct: 98  QTLEFSGSFFEGGFGAEDEPPAPPGTGFADALEDKEEXQCPPGLRKYESMVILRPDMSED 157

Query: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180
           ERLALTQKYEELLVAGGGMYVEVF++G+VPLAYSIKKKNKAGETNTY+DGI+LLFTYFTK
Sbjct: 158 ERLALTQKYEELLVAGGGMYVEVFNRGLVPLAYSIKKKNKAGETNTYMDGINLLFTYFTK 217

Query: 181 PESMGVLEAALQADDDVVRSMSFKVRKRKY 211
           PESM VLEAALQADDDV+RSMSFKVR RKY
Sbjct: 218 PESMRVLEAALQADDDVIRSMSFKVRNRKY 234

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BLAST of Carg08554 vs. TAIR10
Match: AT1G64510.1 (Translation elongation factor EF1B/ribosomal protein S6 family protein)

HSP 1 Score: 245.0 bits (624), Expect = 4.2e-65
Identity = 126/193 (65.28%), Postives = 149/193 (77.20%), Query Frame = 0


Query: 20  PLSLPQFTPHISLPFTLRS--SKSLFSPDGIGPALGLGLSVKAQTLEFSGSFFQGGFGTE 79
           PL      P +S   +LR   SKS      I    G    VK+Q L+FSG+FF+GGFG++
Sbjct: 14  PLPNVSSQPLLSFSHSLRPFISKSKPMCASIQKRDGSQFVVKSQALDFSGTFFEGGFGSD 73

Query: 80  DEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSEDERLALTQKYEELLVAGG 139
           D+P +  G+G +  LEDK EPQCPPGLR+YE+M VLRPDMSEDERL LTQKYEELLVAGG
Sbjct: 74  DDPTSPSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEELLVAGG 133

Query: 140 GMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTKPESMGVLEAALQADDDV 199
           GMYVEVF++GV+PLAYSI+KKNKAGETNTYLDGI LLFTYFTKPES+  LE  L ADDD+
Sbjct: 134 GMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESIVPLETVLTADDDI 193

Query: 200 VRSMSFKVRKRKY 211
           +RS SFK++KRKY
Sbjct: 194 IRSSSFKIKKRKY 206

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BLAST of Carg08554 vs. Swiss-Prot
Match: sp|Q8VY91|RR6_ARATH (30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS6 PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 7.6e-64
Identity = 126/193 (65.28%), Postives = 149/193 (77.20%), Query Frame = 0


Query: 20  PLSLPQFTPHISLPFTLRS--SKSLFSPDGIGPALGLGLSVKAQTLEFSGSFFQGGFGTE 79
           PL      P +S   +LR   SKS      I    G    VK+Q L+FSG+FF+GGFG++
Sbjct: 14  PLPNVSSQPLLSFSHSLRPFISKSKPMCASIQKRDGSQFVVKSQALDFSGTFFEGGFGSD 73

Query: 80  DEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSEDERLALTQKYEELLVAGG 139
           D+P +  G+G +  LEDK EPQCPPGLR+YE+M VLRPDMSEDERL LTQKYEELLVAGG
Sbjct: 74  DDPTSPSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEELLVAGG 133

Query: 140 GMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTKPESMGVLEAALQADDDV 199
           GMYVEVF++GV+PLAYSI+KKNKAGETNTYLDGI LLFTYFTKPES+  LE  L ADDD+
Sbjct: 134 GMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESIVPLETVLTADDDI 193

Query: 200 VRSMSFKVRKRKY 211
           +RS SFK++KRKY
Sbjct: 194 IRSSSFKIKKRKY 206

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BLAST of Carg08554 vs. Swiss-Prot
Match: sp|P82403|RR6_SPIOL (30S ribosomal protein S6 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS6 PE=1 SV=3)

HSP 1 Score: 234.2 bits (596), Expect = 1.3e-60
Identity = 131/211 (62.09%), Postives = 152/211 (72.04%), Query Frame = 0


Query: 2   AFTSTLTATSSTSPLFSKPLSLPQFTPH-ISLPFTLRSSKSLFSPDGIGPALGLGLSVKA 61
           + TSTL ++S T+ L S P   P+  P  I+    L                     VKA
Sbjct: 5   SLTSTLPSSSPTTSLHSIP--KPKLKPSTINFTHNLNPFNXXXXXXXXXXXXXXXPYVKA 64

Query: 62  QTLEFSGSFFQGGFGTEDE-PPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSE 121
             L+FSGSFF+GGFG  DE PP++P  G AV  E+K EPQCPPGLR+YE+M VLRPDM+E
Sbjct: 65  IALDFSGSFFEGGFGGLDEDPPSTPPAGLAV--EEKPEPQCPPGLRQYETMAVLRPDMTE 124

Query: 122 DERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFT 181
           DERL LTQKYEELLVAGG MYVEVF++GV+PLAYSIK+KNKAGETN YLDGI LLFTYFT
Sbjct: 125 DERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFT 184

Query: 182 KPESMGVLEAALQADDDVVRSMSFKVRKRKY 211
           KPES+  LEAAL  DDDV+RS SFK+RKRKY
Sbjct: 185 KPESISPLEAALVTDDDVIRSSSFKIRKRKY 211

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BLAST of Carg08554 vs. Swiss-Prot
Match: sp|Q6B922|RR6_GRATL (30S ribosomal protein S6, chloroplastic OS=Gracilaria tenuistipitata var. liui OX=285951 GN=rps6 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-08
Identity = 34/101 (33.66%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 104 LRKYESMVVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGE 163
           L KYE++ +L+P+++E E L L  +Y+ L+   GG  + V HKG   L Y+IK       
Sbjct: 3   LNKYETIYILQPNITESENLILINEYKALIKKYGGNNIVVQHKGRRHLNYNIK------- 62

Query: 164 TNTYLDGISLLFTYFTKPESMGVLEAALQADDDVVRSMSFK 205
             +Y DGI +   Y      + +LE A++    V+R M+ K
Sbjct: 63  --SYYDGIYVQINYTASSNLVRILEKAMRLSQHVIRYMTIK 94

[Close]

BLAST of Carg08554 vs. Swiss-Prot
Match: sp|Q10XV0|RS6_TRIEI (30S ribosomal protein S6 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=rpsF PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.7e-08
Identity = 30/98 (30.61%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 107 YESMVVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNT 166
           YE+M +LRPDM+E++      KY+ +L   G   +++ H+G + LAY         E N 
Sbjct: 6   YETMYILRPDMTEEKVEQAITKYKSMLEEQGAYDIKIQHRGKLRLAY---------EINN 65

Query: 167 YLDGISLLFTYFTKPESMGVLEAALQADDDVVRSMSFK 205
             +GI +   Y   P  + +LE A++  ++V+R ++ K
Sbjct: 66  QREGIYIQMNYQGPPTQIAILERAMRLSEEVIRYLTVK 94

[Close]

BLAST of Carg08554 vs. Swiss-Prot
Match: sp|A5GX14|RS6_SYNR3 (30S ribosomal protein S6 OS=Synechococcus sp. (strain RCC307) OX=316278 GN=rpsF PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-07
Identity = 32/98 (32.65%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 107 YESMVVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNT 166
           YE+M +LRPD++E+E  +   KY +L+V  GG  ++   +G   LAY+I K         
Sbjct: 7   YETMYILRPDIAEEEVESHANKYRDLVVEAGGEVIDSQMRGKRRLAYNIGK--------- 66

Query: 167 YLDGISLLFTYFTKPESMGVLEAALQADDDVVRSMSFK 205
           + +GI +   Y    + +G LE A++  +DV+R ++ K
Sbjct: 67  HREGIYIQLNYSGDGKQVGPLEKAMRLSEDVIRYLTVK 95

[Close]

BLAST of Carg08554 vs. TrEMBL
Match: tr|A0A1S4DT54|A0A1S4DT54_CUCME (30S ribosomal protein S6 alpha, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107990347 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 3.9e-81
Identity = 163/210 (77.62%), Postives = 175/210 (83.33%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLFSKPLSLPQFTPHISLPFTLRSSKSLFSPDGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPL SK  SLP FT  IS PFTL+ SK LFSPDGIG ALG+GLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60

Query: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120
           QTLEFSGSFF+GG G++DEPPA P                   LRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPXXXXXXXXXXXXXXXXXXXLRKYETMVVLRPDMSED 120

Query: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180
           ERLA T+KYEELLVAGG MYVEVF+KG++PLAYSIKKKNKAGETNTYLDGI+LLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMGVLEAALQADDDVVRSMSFKVRKRKY 211
           PESM VLEA LQADDDVVRSMSFKVRKRK+
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFKVRKRKF 210

[Close]

BLAST of Carg08554 vs. TrEMBL
Match: tr|A0A0A0KK24|A0A0A0KK24_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148810 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.1e-79
Identity = 162/210 (77.14%), Postives = 172/210 (81.90%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLFSKPLSLPQFTPHISLPFTLRSSKSLFSPDGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPL SK   L  FT  IS PF L+ SK LFSP GIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120
           QTLEFSGSFF+GG G++DEPPA P                   LRKYESMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPXXXXXXXXXXXXXXXXXXXLRKYESMVVLRPDMSED 120

Query: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180
           ERLA T+KYEELLVAGG MYVEVF+KG++PLAYSIKKKNKAGETNTYLDGI+LLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMGVLEAALQADDDVVRSMSFKVRKRKY 211
           PESM VLEA LQADDDVVRSMSFKVRKRK+
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFKVRKRKF 210

[Close]

BLAST of Carg08554 vs. TrEMBL
Match: tr|A0A2P5VQH8|A0A2P5VQH8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA39614 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 1.7e-68
Identity = 146/210 (69.52%), Postives = 165/210 (78.57%), Query Frame = 0


Query: 11  SSTSPLFSKPLS---LPQFTPHISLPFT------LRSSKSLFS-PDGIGPALGLGLSVKA 70
           S TS L + P     LPQF+P   L FT      L   KSL S      P+    L+VKA
Sbjct: 3   SPTSALTNSPFCPHLLPQFSPLPVLSFTHSLKPILPKLKSLISLKRDNHPST---LTVKA 62

Query: 71  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 130
           QTL+FSGSFF+GGFG++D+PP+ PG+G    LEDKEEPQCPPGLR+YE+M VLRPDMSED
Sbjct: 63  QTLDFSGSFFEGGFGSDDDPPSQPGSGITA-LEDKEEPQCPPGLRQYETMAVLRPDMSED 122

Query: 131 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 190
           ERLALTQKYEELLVAGGGMY+EVF++GV+PLAYSIKKKNKAGETNTYLDGI LLFTYFTK
Sbjct: 123 ERLALTQKYEELLVAGGGMYIEVFNRGVIPLAYSIKKKNKAGETNTYLDGIYLLFTYFTK 182

Query: 191 PESMGVLEAALQADDDVVRSMSFKVRKRKY 211
           PESM  LEAAL  DDDV+RS SFK+RKRKY
Sbjct: 183 PESMTALEAALNTDDDVIRSTSFKIRKRKY 208

[Close]

BLAST of Carg08554 vs. TrEMBL
Match: tr|A0A1U8NDZ2|A0A1U8NDZ2_GOSHI (30S ribosomal protein S6 alpha, chloroplastic-like OS=Gossypium hirsutum OX=3635 GN=LOC107947179 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 1.7e-68
Identity = 146/210 (69.52%), Postives = 165/210 (78.57%), Query Frame = 0


Query: 11  SSTSPLFSKPLS---LPQFTPHISLPFT------LRSSKSLFS-PDGIGPALGLGLSVKA 70
           S TS L + P     LPQF+P   L FT      L   KSL S      P+    L+VKA
Sbjct: 3   SPTSALTNSPFCPHLLPQFSPLPVLSFTHSLKPILPKLKSLISLKRDNHPST---LTVKA 62

Query: 71  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 130
           QTL+FSGSFF+GGFG++D+PP+ PG+G    LEDKEEPQCPPGLR+YE+M VLRPDMSED
Sbjct: 63  QTLDFSGSFFEGGFGSDDDPPSQPGSGITA-LEDKEEPQCPPGLRQYETMAVLRPDMSED 122

Query: 131 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 190
           ERLALTQKYEELLVAGGGMY+EVF++GV+PLAYSIKKKNKAGETNTYLDGI LLFTYFTK
Sbjct: 123 ERLALTQKYEELLVAGGGMYIEVFNRGVIPLAYSIKKKNKAGETNTYLDGIYLLFTYFTK 182

Query: 191 PESMGVLEAALQADDDVVRSMSFKVRKRKY 211
           PESM  LEAAL  DDDV+RS SFK+RKRKY
Sbjct: 183 PESMTALEAALNTDDDVIRSTSFKIRKRKY 208

[Close]

BLAST of Carg08554 vs. TrEMBL
Match: tr|A0A0B0PSF5|A0A0B0PSF5_GOSAR (30S ribosomal S6 alpha, chloroplastic-like protein OS=Gossypium arboreum OX=29729 GN=F383_05526 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 2.9e-68
Identity = 144/210 (68.57%), Postives = 165/210 (78.57%), Query Frame = 0


Query: 11  SSTSPLFSKPLS---LPQFTPHISLPFTLRSSKSLFSPDGIGPALGL-------GLSVKA 70
           S TS L + P     LPQF+P   L FT  S KS+  P  +   + L        L+VKA
Sbjct: 3   SPTSALTNSPFCPHLLPQFSPLPVLSFT-HSLKSI--PPKLKSLISLKRDNHPSTLTVKA 62

Query: 71  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 130
           QTL+FSGSFF+GGFG++D+PP+ PG+G    LEDKEEPQCPPGLR+YE+M VLRPDMSED
Sbjct: 63  QTLDFSGSFFEGGFGSDDDPPSQPGSGITA-LEDKEEPQCPPGLRQYETMAVLRPDMSED 122

Query: 131 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 190
           ERLALTQKYEELLVAGGGMY+EVF++GV+PLAYSIKKKNKAGETN YLDGI LLFTYFTK
Sbjct: 123 ERLALTQKYEELLVAGGGMYIEVFNRGVIPLAYSIKKKNKAGETNAYLDGIYLLFTYFTK 182

Query: 191 PESMGVLEAALQADDDVVRSMSFKVRKRKY 211
           PESM  LEAAL  DDDV+RS SFK+RKRKY
Sbjct: 183 PESMTALEAALNTDDDVIRSTSFKIRKRKY 208

The following BLAST results are available for this feature:

BLAST of Carg08554 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534494.1	2.1e-110	99.05	30S ribosomal protein S6 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022958683.1	1.3e-109	98.57	30S ribosomal protein S6 alpha, chloroplastic [Cucurbita moschata]	[more]
XP_022996136.1	7.4e-108	96.19	30S ribosomal protein S6 alpha, chloroplastic-like [Cucurbita maxima]	[more]
XP_022156008.1	1.9e-84	80.00	30S ribosomal protein S6 alpha, chloroplastic [Momordica charantia]	[more]
XP_023549667.1	4.8e-83	78.57	30S ribosomal protein S6 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg08554 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G64510.1	4.2e-65	65.28	Translation elongation factor EF1B/ribosomal protein S6 family protein	[more]

BLAST of Carg08554 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VY91\|RR6_ARATH	7.6e-64	65.28	30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|P82403\|RR6_SPIOL	1.3e-60	62.09	30S ribosomal protein S6 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RP...	[more]
sp\|Q6B922\|RR6_GRATL	2.0e-08	33.66	30S ribosomal protein S6, chloroplastic OS=Gracilaria tenuistipitata var. liui O...	[more]
sp\|Q10XV0\|RS6_TRIEI	7.7e-08	30.61	30S ribosomal protein S6 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 G...	[more]
sp\|A5GX14\|RS6_SYNR3	1.0e-07	32.65	30S ribosomal protein S6 OS=Synechococcus sp. (strain RCC307) OX=316278 GN=rpsF ...	[more]

BLAST of Carg08554 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DT54\|A0A1S4DT54_CUCME	3.9e-81	77.62	30S ribosomal protein S6 alpha, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1079...	[more]
tr\|A0A0A0KK24\|A0A0A0KK24_CUCSA	2.1e-79	77.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148810 PE=3 SV=1	[more]
tr\|A0A2P5VQH8\|A0A2P5VQH8_GOSBA	1.7e-68	69.52	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA39614 PE=3 SV...	[more]
tr\|A0A1U8NDZ2\|A0A1U8NDZ2_GOSHI	1.7e-68	69.52	30S ribosomal protein S6 alpha, chloroplastic-like OS=Gossypium hirsutum OX=3635...	[more]
tr\|A0A0B0PSF5\|A0A0B0PSF5_GOSAR	2.9e-68	68.57	30S ribosomal S6 alpha, chloroplastic-like protein OS=Gossypium arboreum OX=2972...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR035980	Ribosomal_S6_sf
IPR020814	Ribosomal_S6_plastid/chlpt
IPR014717	Transl_elong_EF1B/ribosomal_S6
IPR000529	Ribosomal_S6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08554-RA	Carg08554-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000529	Ribosomal protein S6	PFAM	PF01250	Ribosomal_S6	coord: 106..204 e-value: 1.1E-15 score: 57.5
IPR000529	Ribosomal protein S6	PANTHER	PTHR21011	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6	coord: 55..210
IPR014717	Translation elongation factor EF1B/ribosomal protein S6	GENE3D	G3DSA:3.30.70.60		coord: 104..210 e-value: 8.3E-16 score: 59.8
None	No IPR available	PANTHER	PTHR21011:SF7	30S RIBOSOMAL PROTEIN S6 ALPHA, CHLOROPLASTIC	coord: 55..210
None	No IPR available	CDD	cd15487	bS6_chloro_cyano	coord: 104..205 e-value: 3.37706E-33 score: 115.383
IPR020814	Ribosomal protein S6, plastid/chloroplast	HAMAP	MF_00360	Ribosomal_S6	coord: 104..207 score: 13.645
IPR035980	Ribosomal protein S6 superfamily	SUPERFAMILY	SSF54995	Ribosomal protein S6	coord: 104..208

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08554	Cla011359	Watermelon (97103) v1	carwmB0709
Carg08554	Csa5G148810	Cucumber (Chinese Long) v2	carcuB0731
Carg08554	MELO3C005759	Melon (DHL92) v3.5.1	carmeB0706
Carg08554	ClCG01G001790	Watermelon (Charleston Gray)	carwcgB0686
Carg08554	CSPI05G04560	Wild cucumber (PI 183967)	carcpiB0747
Carg08554	Cucsa.303980	Cucumber (Gy14) v1	carcgyB0801
Carg08554	CmaCh02G009190	Cucurbita maxima (Rimu)	carcmaB0999
Carg08554	CmaCh15G012880	Cucurbita maxima (Rimu)	carcmaB0993
Carg08554	CmoCh02G009270	Cucurbita moschata (Rifu)	carcmoB0971
Carg08554	CmoCh15G013590	Cucurbita moschata (Rifu)	carcmoB0965
Carg08554	Lsi09G001650	Bottle gourd (USVL1VR-Ls)	carlsiB646
Carg08554	Cp4.1LG13g00990	Cucurbita pepo (Zucchini)	carcpeB0996
Carg08554	Cp4.1LG05g07870	Cucurbita pepo (Zucchini)	carcpeB1002
Carg08554	CsGy5G001810	Cucumber (Gy14) v2	carcgybB0709
Carg08554	MELO3C005759.2	Melon (DHL92) v3.6.1	carmedB0719
Carg08554	CsaV3_5G001930	Cucumber (Chinese Long) v3	carcucB0750
Carg08554	Cla97C01G001830	Watermelon (97103) v2	carwmbB0739

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08554	Carg21285	Silver-seed gourd	carcarB385

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08554	Wax gourd	carwgoB0830