Lsi09G000270.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGAGCTATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTGTCTGCCCTACCGGCGGTGAGTCGCCTGACTTCCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTCCAACCAACAGCCTTCTCCATCGGAGCAAGGTGTGTCCAGCGAAGAACATCGAGAGGCCGAGAAAGGAGGTTCGCTGAATCAACACGAGGCTGCCGGAGATGAACGAGATGGTGAAGATGAAGAAGTTGACACGAACGAAGCGCCCGTCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTACGATTTTTGA ATGTCGAGCTATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTGTCTGCCCTACCGGCGGTGAGTCGCCTGACTTCCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTCCAACCAACAGCCTTCTCCATCGGAGCAAGGTGTGTCCAGCGAAGAACATCGAGAGGCCGAGAAAGGAGGTTCGCTGAATCAACACGAGGCTGCCGGAGATGAACGAGATGGTGAAGATGAAGAAGTTGACACGAACGAAGCGCCCGTCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTACGATTTTTGA ATGTCGAGCTATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTGTCTGCCCTACCGGCGGTGAGTCGCCTGACTTCCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTCCAACCAACAGCCTTCTCCATCGGAGCAAGGTGTGTCCAGCGAAGAACATCGAGAGGCCGAGAAAGGAGGTTCGCTGAATCAACACGAGGCTGCCGGAGATGAACGAGATGGTGAAGATGAAGAAGTTGACACGAACGAAGCGCCCGTCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTACGATTTTTGA MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF
BLAST of Lsi09G000270.1 vs. Swiss-Prot
Match: SDHF4_DROME (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogaster GN=Sirup PE=3 SV=2) HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06 Identity = 23/31 (74.19%), Postives = 24/31 (77.42%), Query Frame = 1
BLAST of Lsi09G000270.1 vs. TrEMBL
Match: A0A0A0KQ66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139490 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 3.7e-37 Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = 1
BLAST of Lsi09G000270.1 vs. TrEMBL
Match: I3S0H7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 2.1e-11 Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 1
BLAST of Lsi09G000270.1 vs. TrEMBL
Match: A0A103YDI6_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_014540 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 6.0e-11 Identity = 54/116 (46.55%), Postives = 68/116 (58.62%), Query Frame = 1
BLAST of Lsi09G000270.1 vs. TrEMBL
Match: A0A124SGP8_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_014542 PE=4 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.0e-10 Identity = 55/120 (45.83%), Postives = 68/120 (56.67%), Query Frame = 1
BLAST of Lsi09G000270.1 vs. TrEMBL
Match: A0A061G1Q2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015376 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10 Identity = 55/116 (47.41%), Postives = 73/116 (62.93%), Query Frame = 1
BLAST of Lsi09G000270.1 vs. TAIR10
Match: AT5G67490.1 (AT5G67490.1 unknown protein) HSP 1 Score: 52.0 bits (123), Expect = 2.8e-07 Identity = 37/96 (38.54%), Postives = 53/96 (55.21%), Query Frame = 1
BLAST of Lsi09G000270.1 vs. NCBI nr
Match: gi|659074410|ref|XP_008437589.1| (PREDICTED: UPF0369 protein C6orf57 homolog [Cucumis melo]) HSP 1 Score: 162.5 bits (410), Expect = 4.1e-37 Identity = 89/111 (80.18%), Postives = 95/111 (85.59%), Query Frame = 1
BLAST of Lsi09G000270.1 vs. NCBI nr
Match: gi|778708202|ref|XP_011656145.1| (PREDICTED: succinate dehydrogenase assembly factor 4, mitochondrial [Cucumis sativus]) HSP 1 Score: 162.2 bits (409), Expect = 5.4e-37 Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = 1
BLAST of Lsi09G000270.1 vs. NCBI nr
Match: gi|388491406|gb|AFK33769.1| (unknown [Lotus japonicus]) HSP 1 Score: 76.6 bits (187), Expect = 3.0e-11 Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 1
BLAST of Lsi09G000270.1 vs. NCBI nr
Match: gi|976922734|gb|KVI07099.1| (Protein of unknown function DUF1674 [Cynara cardunculus var. scolymus]) HSP 1 Score: 75.1 bits (183), Expect = 8.6e-11 Identity = 54/116 (46.55%), Postives = 68/116 (58.62%), Query Frame = 1
BLAST of Lsi09G000270.1 vs. NCBI nr
Match: gi|976922728|gb|KVI07093.1| (Protein of unknown function DUF1674, partial [Cynara cardunculus var. scolymus]) HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10 Identity = 55/120 (45.83%), Postives = 68/120 (56.67%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
|