Lsi06G000620.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTCGTCTCACTTCTCTTCTTGAAGCAATGGAATTAAAAAAGGATACACAAATTTCAATGAAAGCTCCATTTACAAACCTCCAAAATATCTTCAATGGCCGTTCGCTAATCCCTCTCCCTCCCACAGCTGAAGAACAACAACAAGAATACAATACTGAATCAAATGAAAGAACAATCACTTCTGGACCAAGCAGCTCTTCCTCTTCTCACCTTCCCTATTCTCTCTTTAATGCTTCTCCTTCCCTTTTCCTTCGTATTGGATCCTGGCAGGTAACATTTAAAATACTCTCTTCAAAATCACTTTTATCGTATCTGATTGTATGCAGAAATCCCATTAAACCCTAAACCGAGAATCACGTCTTTATTCACTCAAAATAAGACATGTTTTATAGCGATTTTGAATTTAACAAAAGTGATTTTAACTATTTCAAAATCACTAAACTACATAAAAAAAAAAATCAAAAGAAATTGTGTTCTAATATTCATTTTTCTTGTATTTGGTAATTTGATTTTGCAGGCAGTGGCCAAAAATGAAGGTGATCTGCTCCTGAGATTTGATTACAAAAACAAGAAGATATCTTGGGAGATTGTGAGGGAAGGGCCTTCTAGGCACAAGATTGAAGTTGATTGGTCTAATATCATAGGAATTGAAGCTGCCTATGAAGACCATAGACAAGGAATCCTCCAACTTGAGGTATTGAAATTTTGTTATTGCATTTTTAAATGGTTGAGAGTTTGGGTGTAATCACACCCGCAATAATGCACCGGATCTCATCAGAACTCCGTATTTATGCTCATTCGGACGAGAGTAGTACTAAGTTGGATGACCACTTGAAAAGTCCTCGTGGTTGCACCCTTTTATAAAAAAATAAATAACTTGTTGAGAAAGTTTGATATTTGGAGTTAACCCTTTTCAAAATGGTGCACACTTTGTCTGATGTTTTATCTTTCATGTATGAACTTCATTTTTAGAATATATGATCAGGTTATTCTTTTTTTTTTTCATACCCATTTAGTTTTTTTTAGAAAAAATTATTGAAATTTTGATGCTTGAAACCCTTTAAAATTTAGATCATATCACTTTCTTTTAGGGTTTCTTTTTCTTGTACAAATGAGTTGTTCTTTTTTTTGCATAGAAGAACTTTGTGCCCATTGATTTATTGATCACCAATTATTTGGTTTTTTTGTTATTATTTTAAAAAATTAAGACCTAGATGTTTTCAAGCCTTTTCAAAATAGAAAATCTCTGCTATTAAGAAAAAAACCCAAATGAATAGATAACACTTTCTTTAGGGTTCTTTTTTTTTCATTTTTTATTGACTGGTTTGATTTATAGAACAAATTATGATGGTATATTATCTTCTATTCAAAATTAAGGGTTTGTAAATATTAACTTAATGCATATATAATAGTGATAGTAATTTTCCATTTTTTTTCATGTAATATGAATTTTTTAGCAAATAATTTTATTCTTCTTAAAAAAAAAGAAGAAAAAAGAAAAGGAAACAAAGAAATTAAAATTCAATCAATAATCTGAAACTTTTTATAGATTGAATTTCAATAAATTAAAAAATATATGTTCATATTCAATATAAATTGTTGTAATTCTCCCCCTTTTGAAGCTGCAATCACCACCAAGATTTTACAAGGAAATTGAAATCAAACCACTGAAGCATTTCAAATGGGAAGCTGAATCTGATTTTACTGGAGGTAGAGCTTCTACGAGCAGGTAATAATCTCAAAAGATATTAATTAAATTTCATATCTTAACATTTAATGGAATAGAAATTACCAGGTTGAAAATTCTGTTAACATTACAAACATAAGTGAAAATGGATATATACTGAATAACACAAATGAAAGTTTTTTCTTTTTCAACATGTGGGGTTGGGTTTTTCGAACTTCCGACCTCTTTATATACTAATTTAAATGTTTTTATGAATTTTTTTTTTCAGGAAACACTTTTCAGTGTTTCCACCAGGAGTACTTGGTGTACATTATAAGAGACTGATGAAGAACAAGAATTTGTTAGAAGTAAGCCAAAAGTCATTTCCAACAGCTGATTCCCCTTATTTCCCCAAGCAT TTCGTCTCACTTCTCTTCTTGAAGCAATGGAATTAAAAAAGGATACACAAATTTCAATGAAAGCTCCATTTACAAACCTCCAAAATATCTTCAATGGCCGTTCGCTAATCCCTCTCCCTCCCACAGCTGAAGAACAACAACAAGAATACAATACTGAATCAAATGAAAGAACAATCACTTCTGGACCAAGCAGCTCTTCCTCTTCTCACCTTCCCTATTCTCTCTTTAATGCTTCTCCTTCCCTTTTCCTTCGTATTGGATCCTGGCAGGCAGTGGCCAAAAATGAAGGTGATCTGCTCCTGAGATTTGATTACAAAAACAAGAAGATATCTTGGGAGATTGTGAGGGAAGGGCCTTCTAGGCACAAGATTGAACTGCAATCACCACCAAGATTTTACAAGGAAATTGAAATCAAACCACTGAAGCATTTCAAATGGGAAGCTGAATCTGATTTTACTGGAGGTAGAGCTTCTACGAGCAGGAAACACTTTTCAGTGTTTCCACCAGGAGTACTTGGTGTACATTATAAGAGACTGATGAAGAACAAGAATTTGTTAGAAGTAAGCCAAAAGTCATTTCCAACAGCTGATTCCCCTTATTTCCCCAAGCAT ATGGAATTAAAAAAGGATACACAAATTTCAATGAAAGCTCCATTTACAAACCTCCAAAATATCTTCAATGGCCGTTCGCTAATCCCTCTCCCTCCCACAGCTGAAGAACAACAACAAGAATACAATACTGAATCAAATGAAAGAACAATCACTTCTGGACCAAGCAGCTCTTCCTCTTCTCACCTTCCCTATTCTCTCTTTAATGCTTCTCCTTCCCTTTTCCTTCGTATTGGATCCTGGCAGGCAGTGGCCAAAAATGAAGGTGATCTGCTCCTGAGATTTGATTACAAAAACAAGAAGATATCTTGGGAGATTGTGAGGGAAGGGCCTTCTAGGCACAAGATTGAACTGCAATCACCACCAAGATTTTACAAGGAAATTGAAATCAAACCACTGAAGCATTTCAAATGGGAAGCTGAATCTGATTTTACTGGAGGTAGAGCTTCTACGAGCAGGAAACACTTTTCAGTGTTTCCACCAGGAGTACTTGGTGTACATTATAAGAGACTGATGAAGAACAAGAATTTGTTAGAAGTAAGCCAAAAGTCATTTCCAACAGCTGATTCCCCTTATTTCCCCAAGCAT MELKKDTQISMKAPFTNLQNIFNGRSLIPLPPTAEEQQQEYNTESNERTITSGPSSSSSSHLPYSLFNASPSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRHKIELQSPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHYKRLMKNKNLLEVSQKSFPTADSPYFPKH
BLAST of Lsi06G000620.1 vs. TrEMBL
Match: A0A0A0M1F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561960 PE=4 SV=1) HSP 1 Score: 271.6 bits (693), Expect = 7.7e-70 Identity = 136/218 (62.39%), Postives = 164/218 (75.23%), Query Frame = 1
BLAST of Lsi06G000620.1 vs. TrEMBL
Match: A0A0A0M1F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561420 PE=4 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 1.7e-24 Identity = 71/190 (37.37%), Postives = 102/190 (53.68%), Query Frame = 1
BLAST of Lsi06G000620.1 vs. TrEMBL
Match: A0A067H2D5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009123mg PE=4 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 3.7e-24 Identity = 59/146 (40.41%), Postives = 84/146 (57.53%), Query Frame = 1
BLAST of Lsi06G000620.1 vs. TrEMBL
Match: V4T5S9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003523mg PE=4 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 3.7e-24 Identity = 59/146 (40.41%), Postives = 84/146 (57.53%), Query Frame = 1
BLAST of Lsi06G000620.1 vs. TrEMBL
Match: A0A022RAG3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a005144mg PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 4.1e-23 Identity = 63/164 (38.41%), Postives = 93/164 (56.71%), Query Frame = 1
BLAST of Lsi06G000620.1 vs. TAIR10
Match: AT2G24100.1 (AT2G24100.1 unknown protein) HSP 1 Score: 84.7 bits (208), Expect = 6.8e-17 Identity = 44/146 (30.14%), Postives = 75/146 (51.37%), Query Frame = 1
BLAST of Lsi06G000620.1 vs. TAIR10
Match: AT4G30780.1 (AT4G30780.1 unknown protein) HSP 1 Score: 84.3 bits (207), Expect = 8.8e-17 Identity = 45/147 (30.61%), Postives = 77/147 (52.38%), Query Frame = 1
BLAST of Lsi06G000620.1 vs. TAIR10
Match: AT3G05770.1 (AT3G05770.1 unknown protein) HSP 1 Score: 69.3 bits (168), Expect = 2.9e-12 Identity = 55/215 (25.58%), Postives = 93/215 (43.26%), Query Frame = 1
BLAST of Lsi06G000620.1 vs. TAIR10
Match: AT1G54300.1 (AT1G54300.1 unknown protein) HSP 1 Score: 65.9 bits (159), Expect = 3.2e-11 Identity = 47/154 (30.52%), Postives = 69/154 (44.81%), Query Frame = 1
BLAST of Lsi06G000620.1 vs. NCBI nr
Match: gi|700210920|gb|KGN66016.1| (hypothetical protein Csa_1G561960 [Cucumis sativus]) HSP 1 Score: 271.6 bits (693), Expect = 1.1e-69 Identity = 136/218 (62.39%), Postives = 164/218 (75.23%), Query Frame = 1
BLAST of Lsi06G000620.1 vs. NCBI nr
Match: gi|659099332|ref|XP_008450546.1| (PREDICTED: uncharacterized protein LOC103492114 isoform X1 [Cucumis melo]) HSP 1 Score: 122.5 bits (306), Expect = 8.3e-25 Identity = 72/190 (37.89%), Postives = 102/190 (53.68%), Query Frame = 1
BLAST of Lsi06G000620.1 vs. NCBI nr
Match: gi|700210915|gb|KGN66011.1| (hypothetical protein Csa_1G561420 [Cucumis sativus]) HSP 1 Score: 120.9 bits (302), Expect = 2.4e-24 Identity = 71/190 (37.37%), Postives = 102/190 (53.68%), Query Frame = 1
BLAST of Lsi06G000620.1 vs. NCBI nr
Match: gi|641862999|gb|KDO81686.1| (hypothetical protein CISIN_1g009123mg [Citrus sinensis]) HSP 1 Score: 119.8 bits (299), Expect = 5.4e-24 Identity = 59/146 (40.41%), Postives = 84/146 (57.53%), Query Frame = 1
BLAST of Lsi06G000620.1 vs. NCBI nr
Match: gi|567881943|ref|XP_006433530.1| (hypothetical protein CICLE_v10003523mg [Citrus clementina]) HSP 1 Score: 119.8 bits (299), Expect = 5.4e-24 Identity = 59/146 (40.41%), Postives = 84/146 (57.53%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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