Lsi06G000620 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000620
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_5219
Location	chr06 : 525257 .. 527340 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGTCTCACTTCTCTTCTTGAAGCAATGGAATTAAAAAAGGATACACAAATTTCAATGAAAGCTCCATTTACAAACCTCCAAAATATCTTCAATGGCCGTTCGCTAATCCCTCTCCCTCCCACAGCTGAAGAACAACAACAAGAATACAATACTGAATCAAATGAAAGAACAATCACTTCTGGACCAAGCAGCTCTTCCTCTTCTCACCTTCCCTATTCTCTCTTTAATGCTTCTCCTTCCCTTTTCCTTCGTATTGGATCCTGGCAGGTAACATTTAAAATACTCTCTTCAAAATCACTTTTATCGTATCTGATTGTATGCAGAAATCCCATTAAACCCTAAACCGAGAATCACGTCTTTATTCACTCAAAATAAGACATGTTTTATAGCGATTTTGAATTTAACAAAAGTGATTTTAACTATTTCAAAATCACTAAACTACATAAAAAAAAAAATCAAAAGAAATTGTGTTCTAATATTCATTTTTCTTGTATTTGGTAATTTGATTTTGCAGGCAGTGGCCAAAAATGAAGGTGATCTGCTCCTGAGATTTGATTACAAAAACAAGAAGATATCTTGGGAGATTGTGAGGGAAGGGCCTTCTAGGCACAAGATTGAAGTTGATTGGTCTAATATCATAGGAATTGAAGCTGCCTATGAAGACCATAGACAAGGAATCCTCCAACTTGAGGTATTGAAATTTTGTTATTGCATTTTTAAATGGTTGAGAGTTTGGGTGTAATCACACCCGCAATAATGCACCGGATCTCATCAGAACTCCGTATTTATGCTCATTCGGACGAGAGTAGTACTAAGTTGGATGACCACTTGAAAAGTCCTCGTGGTTGCACCCTTTTATAAAAAAATAAATAACTTGTTGAGAAAGTTTGATATTTGGAGTTAACCCTTTTCAAAATGGTGCACACTTTGTCTGATGTTTTATCTTTCATGTATGAACTTCATTTTTAGAATATATGATCAGGTTATTCTTTTTTTTTTTCATACCCATTTAGTTTTTTTTAGAAAAAATTATTGAAATTTTGATGCTTGAAACCCTTTAAAATTTAGATCATATCACTTTCTTTTAGGGTTTCTTTTTCTTGTACAAATGAGTTGTTCTTTTTTTTGCATAGAAGAACTTTGTGCCCATTGATTTATTGATCACCAATTATTTGGTTTTTTTGTTATTATTTTAAAAAATTAAGACCTAGATGTTTTCAAGCCTTTTCAAAATAGAAAATCTCTGCTATTAAGAAAAAAACCCAAATGAATAGATAACACTTTCTTTAGGGTTCTTTTTTTTTCATTTTTTATTGACTGGTTTGATTTATAGAACAAATTATGATGGTATATTATCTTCTATTCAAAATTAAGGGTTTGTAAATATTAACTTAATGCATATATAATAGTGATAGTAATTTTCCATTTTTTTTCATGTAATATGAATTTTTTAGCAAATAATTTTATTCTTCTTAAAAAAAAAGAAGAAAAAAGAAAAGGAAACAAAGAAATTAAAATTCAATCAATAATCTGAAACTTTTTATAGATTGAATTTCAATAAATTAAAAAATATATGTTCATATTCAATATAAATTGTTGTAATTCTCCCCCTTTTGAAGCTGCAATCACCACCAAGATTTTACAAGGAAATTGAAATCAAACCACTGAAGCATTTCAAATGGGAAGCTGAATCTGATTTTACTGGAGGTAGAGCTTCTACGAGCAGGTAATAATCTCAAAAGATATTAATTAAATTTCATATCTTAACATTTAATGGAATAGAAATTACCAGGTTGAAAATTCTGTTAACATTACAAACATAAGTGAAAATGGATATATACTGAATAACACAAATGAAAGTTTTTTCTTTTTCAACATGTGGGGTTGGGTTTTTCGAACTTCCGACCTCTTTATATACTAATTTAAATGTTTTTATGAATTTTTTTTTTCAGGAAACACTTTTCAGTGTTTCCACCAGGAGTACTTGGTGTACATTATAAGAGACTGATGAAGAACAAGAATTTGTTAGAAGTAAGCCAAAAGTCATTTCCAACAGCTGATTCCCCTTATTTCCCCAAGCAT

mRNA sequence

TTCGTCTCACTTCTCTTCTTGAAGCAATGGAATTAAAAAAGGATACACAAATTTCAATGAAAGCTCCATTTACAAACCTCCAAAATATCTTCAATGGCCGTTCGCTAATCCCTCTCCCTCCCACAGCTGAAGAACAACAACAAGAATACAATACTGAATCAAATGAAAGAACAATCACTTCTGGACCAAGCAGCTCTTCCTCTTCTCACCTTCCCTATTCTCTCTTTAATGCTTCTCCTTCCCTTTTCCTTCGTATTGGATCCTGGCAGGCAGTGGCCAAAAATGAAGGTGATCTGCTCCTGAGATTTGATTACAAAAACAAGAAGATATCTTGGGAGATTGTGAGGGAAGGGCCTTCTAGGCACAAGATTGAACTGCAATCACCACCAAGATTTTACAAGGAAATTGAAATCAAACCACTGAAGCATTTCAAATGGGAAGCTGAATCTGATTTTACTGGAGGTAGAGCTTCTACGAGCAGGAAACACTTTTCAGTGTTTCCACCAGGAGTACTTGGTGTACATTATAAGAGACTGATGAAGAACAAGAATTTGTTAGAAGTAAGCCAAAAGTCATTTCCAACAGCTGATTCCCCTTATTTCCCCAAGCAT

Coding sequence (CDS)

ATGGAATTAAAAAAGGATACACAAATTTCAATGAAAGCTCCATTTACAAACCTCCAAAATATCTTCAATGGCCGTTCGCTAATCCCTCTCCCTCCCACAGCTGAAGAACAACAACAAGAATACAATACTGAATCAAATGAAAGAACAATCACTTCTGGACCAAGCAGCTCTTCCTCTTCTCACCTTCCCTATTCTCTCTTTAATGCTTCTCCTTCCCTTTTCCTTCGTATTGGATCCTGGCAGGCAGTGGCCAAAAATGAAGGTGATCTGCTCCTGAGATTTGATTACAAAAACAAGAAGATATCTTGGGAGATTGTGAGGGAAGGGCCTTCTAGGCACAAGATTGAACTGCAATCACCACCAAGATTTTACAAGGAAATTGAAATCAAACCACTGAAGCATTTCAAATGGGAAGCTGAATCTGATTTTACTGGAGGTAGAGCTTCTACGAGCAGGAAACACTTTTCAGTGTTTCCACCAGGAGTACTTGGTGTACATTATAAGAGACTGATGAAGAACAAGAATTTGTTAGAAGTAAGCCAAAAGTCATTTCCAACAGCTGATTCCCCTTATTTCCCCAAGCAT

Protein sequence

MELKKDTQISMKAPFTNLQNIFNGRSLIPLPPTAEEQQQEYNTESNERTITSGPSSSSSSHLPYSLFNASPSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRHKIELQSPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHYKRLMKNKNLLEVSQKSFPTADSPYFPKH

Homology

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BLAST of Lsi06G000620 vs. TrEMBL
Match: A0A0A0M1F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561960 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 7.7e-70
Identity = 136/218 (62.39%), Postives = 164/218 (75.23%), Query Frame = 1


Query: 1   MELKKDTQISMKAPFTNLQNIFNGRSLIPLPPTAEEQQQE--YNTESNERTITSGPSSSS 60
           M+L+KDT+I MK PFTNLQ IFNGR+L+PLP   EE+QQ   +NT+SN+RT  SGPSSSS
Sbjct: 1   MDLRKDTEIPMKPPFTNLQRIFNGRTLVPLPQINEEEQQHEYHNTQSNQRTTFSGPSSSS 60

Query: 61  SSHLPYSLFNASPSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRHKI--- 120
            +  P + FNA+P+LFLRIGSWQ VA +E DL+L+FDY+NKK+SWE+V EGPS+HKI   
Sbjct: 61  FAEPPNTPFNAAPALFLRIGSWQVVANSESDLVLKFDYRNKKLSWEVVLEGPSKHKIEIE 120

Query: 121 ---------------------ELQSPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKH 180
                                ELQ+PPRFYKEIE +PLK FKWE E DFT GRAS +RKH
Sbjct: 121 WSNIIGIQAAIEDHRQGILQLELQNPPRFYKEIETRPLKLFKWEEEYDFTQGRASMNRKH 180

Query: 181 FSVFPPGVLGVHYKRLMKNKNLLEVSQKSFPTADSPYF 193
           FSVF PG+LG +YKRLMKNK ++EVSQK FPTA+SPYF
Sbjct: 181 FSVFAPGILGTYYKRLMKNKEMVEVSQKPFPTANSPYF 218

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BLAST of Lsi06G000620 vs. TrEMBL
Match: A0A0A0M1F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561420 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-24
Identity = 71/190 (37.37%), Postives = 102/190 (53.68%), Query Frame = 1


Query: 28  IPLPPTAEEQQQEYNTESNERTITSGPSSS-SSSHLPYSLFNASPSLFLRIGSWQAVAKN 87
           + + P+  +Q Q       +R I +  +       L  S+  A   L L+IGSWQ VAKN
Sbjct: 70  LQISPSLLKQMQRSTLSKRKRIINNARTDHHDGERLKASILGA---LMLQIGSWQLVAKN 129

Query: 88  EGDLLLRFDYKNKKISWEIVREG-----------------------PSRHKIELQSPPRF 147
           EGDL+ +F +  +++ WEI+R G                       P   ++EL  PP+F
Sbjct: 130 EGDLVAKFYFAKRQLVWEILRNGLKQKIEIEWSNIIGIQAFLEEDKPGILEVELNHPPKF 189

Query: 148 YKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHYKRLM-KNKNLLEVSQK 193
           YKEIE +P KH +W   SDFT G+A  +R+H  VFPP VL  HY++L  K+K+L E+S++
Sbjct: 190 YKEIEPEPRKHTQWTDGSDFTEGQAYVNRRHCIVFPPKVLDKHYEKLKDKDKHLFELSRR 249

[Close]

BLAST of Lsi06G000620 vs. TrEMBL
Match: A0A067H2D5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009123mg PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-24
Identity = 59/146 (40.41%), Postives = 84/146 (57.53%), Query Frame = 1


Query: 71  PSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRH----------------- 130
           P+L LRIGSW+ V ++EGDL+ +  Y  KK+ WE + +   R                  
Sbjct: 136 PALELRIGSWERVTRHEGDLVAKSYYAKKKLVWEFLEKSLKRKIEIQWADIIGIRATAEE 195

Query: 131 ------KIELQSPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHY 190
                 ++EL+ PP F+ EI+ +P KH  W    DFTGG+A   RKH+  FPPGVL  H+
Sbjct: 196 NEPGILELELKQPPTFHHEIDPQPRKHTNWRLTEDFTGGQAPVFRKHYLKFPPGVLDRHF 255

Query: 191 KRLMK-NKNLLEVSQKSFPTADSPYF 193
           ++L++ +  L E+S+K FPT DSPYF
Sbjct: 256 EKLLQCDSRLFELSRKPFPTLDSPYF 281

[Close]

BLAST of Lsi06G000620 vs. TrEMBL
Match: V4T5S9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003523mg PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-24
Identity = 59/146 (40.41%), Postives = 84/146 (57.53%), Query Frame = 1


Query: 71  PSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRH----------------- 130
           P+L LRIGSW+ V ++EGDL+ +  Y  KK+ WE + +   R                  
Sbjct: 136 PALELRIGSWERVTRHEGDLVAKSYYAKKKLVWEFLEKSLKRKIEIQWADIIGIRATTEE 195

Query: 131 ------KIELQSPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHY 190
                 ++EL+ PP F+ EI+ +P KH  W    DFTGG+A   RKH+  FPPGVL  H+
Sbjct: 196 NEPGILELELKQPPTFHHEIDPQPRKHTNWRLTEDFTGGQAPVFRKHYLKFPPGVLDRHF 255

Query: 191 KRLMK-NKNLLEVSQKSFPTADSPYF 193
           ++L++ +  L E+S+K FPT DSPYF
Sbjct: 256 EKLLQCDSRLFELSRKPFPTLDSPYF 281

[Close]

BLAST of Lsi06G000620 vs. TrEMBL
Match: A0A022RAG3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a005144mg PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.1e-23
Identity = 63/164 (38.41%), Postives = 93/164 (56.71%), Query Frame = 1


Query: 54  PSSSSSSHLPYSLFNASPSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRH 113
           PSSS S  L  S F   P++F+ IGSWQ   ++EGDL  +  Y  +K+ WE++ +G  + 
Sbjct: 116 PSSSISEKLKASNF---PAVFINIGSWQRCTRHEGDLTAKLYYAKRKLVWEVL-DGALKS 175

Query: 114 KIELQ------------------------SPPRFYKEIEIKPLKHFKWEAESDFTGGRAS 173
           KIE+Q                        +PP +Y+EI  +P KH  W+  SDFTGG+A 
Sbjct: 176 KIEIQWSDIIGIRAILPDNEHGTLEIELNNPPLYYREINPQPRKHTLWQQSSDFTGGQAP 235

Query: 174 TSRKHFSVFPPGVLGVHYKRLMK-NKNLLEVSQKSFPTADSPYF 193
             R+H+  FP G+L  HY++L++ ++ L  +SQK FPT +S YF
Sbjct: 236 IWRRHYVKFPAGILDKHYEKLLQCDERLFALSQKPFPTCESAYF 275

[Close]

BLAST of Lsi06G000620 vs. TAIR10
Match: AT2G24100.1 (AT2G24100.1 unknown protein)

HSP 1 Score: 84.7 bits (208), Expect = 6.8e-17
Identity = 44/146 (30.14%), Postives = 75/146 (51.37%), Query Frame = 1


Query: 71  PSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREG--------------------- 130
           P+  LRIG W+  ++ EGDL+ +  +   K+ WE++ +G                     
Sbjct: 115 PATILRIGQWEYKSRYEGDLVAKCYFAKHKLVWEVLEQGLKSKIEIQWSDIMALKANLPE 174

Query: 131 --PSRHKIELQSPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHY 190
             P    I L   P F++E   +P KH  W+A SDFT G+AS +R+HF   PPG++  H+
Sbjct: 175 DEPGTLTIVLARRPLFFRETNPQPRKHTLWQATSDFTDGQASMNRQHFLQCPPGIMNKHF 234

Query: 191 KRLMK-NKNLLEVSQKSFPTADSPYF 193
           ++L++ +  L  +S++      +P+F
Sbjct: 235 EKLVQCDHRLFCLSRQPEINLAAPFF 260

[Close]

BLAST of Lsi06G000620 vs. TAIR10
Match: AT4G30780.1 (AT4G30780.1 unknown protein)

HSP 1 Score: 84.3 bits (207), Expect = 8.8e-17
Identity = 45/147 (30.61%), Postives = 77/147 (52.38%), Query Frame = 1


Query: 71  PSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRHKIELQ------------ 130
           P+  L+IG W+  ++ EGDL+ +  +   K+ WE++ +G  + KIE+Q            
Sbjct: 142 PASLLKIGQWEYKSRYEGDLVAKCYFAKHKLVWEVLEQG-LKSKIEIQWSDIMALKANCP 201

Query: 131 ------------SPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVH 190
                         P F++E   +P KH  W+A SDFT G+AS +R+HF     G++  H
Sbjct: 202 EDGPGTLTLVLARQPLFFRETNPQPRKHTLWQATSDFTDGQASMNRQHFLQCAQGIMNKH 261

Query: 191 YKRLMK-NKNLLEVSQKSFPTADSPYF 193
           +++L++ +  L  +S++     DSPYF
Sbjct: 262 FEKLVQCDHRLFHLSRQPEIAIDSPYF 287

[Close]

BLAST of Lsi06G000620 vs. TAIR10
Match: AT3G05770.1 (AT3G05770.1 unknown protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.9e-12
Identity = 55/215 (25.58%), Postives = 93/215 (43.26%), Query Frame = 1


Query: 11  MKAPFTNLQNIFNG-RSLIPLPPTAEEQQQEYNTESNERTITSGPSSSSSSHLPYSLFNA 70
           +  P T    + N   S + +  T   QQ E +++++  T+   P    + + P S    
Sbjct: 26  LNLPLTKTPELINKIESYLKVHYTCPHQQTENSSKTS--TLPKSPEKLKAMNFPIST--- 85

Query: 71  SPSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRH---------------- 130
                ++IG    VAKN  D++ +F +  KK+ WE +   P  +                
Sbjct: 86  -----IKIGDCVFVAKNPDDIVAKFYFAKKKLLWEFLFGEPVANMPRLKSKIEIQWNDVS 145

Query: 131 ---------------KIELQSPPRFYKEIEIKPLKHFKW-EAESDFTGGRASTSRKHFSV 190
                          KIEL+  P F+ E   +  KH +W + + DFTG +AS  R+H   
Sbjct: 146 SFEESINSRDETGILKIELKKRPTFFTETNPQAGKHTQWKQLDYDFTGDQASYYRRHTLH 205

Query: 191 FPPGVLGVHYKRLMKNKNLLEVSQKSFPTADSPYF 193
           FPPGVL  + ++L+ +    ++ +  FP  +S YF
Sbjct: 206 FPPGVLQKNLEKLLTDSFWSKLYKVPFPVHESLYF 230

[Close]

BLAST of Lsi06G000620 vs. TAIR10
Match: AT1G54300.1 (AT1G54300.1 unknown protein)

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-11
Identity = 47/154 (30.52%), Postives = 69/154 (44.81%), Query Frame = 1


Query: 71  PSLFLRIGSWQAVAKNEGDLLLRF---------------------DYKNK-KISWEIV-- 130
           P   +RIG W  VAKN  D++ +F                       K K +I W  V  
Sbjct: 4   PISTIRIGGWVVVAKNPDDIVAKFYFAKKKLIWEFLFGEPETNTLRLKRKIEIQWNDVSS 63

Query: 131 -------REGPSRHKIELQSPPRFYKEIEIKPLKHFKW-EAESDFTGGRASTSRKHFSVF 190
                  R+     KIEL+  P F+ E   +  KH +W + + DFTG  AS  R+H   F
Sbjct: 64  FEESISSRDETGILKIELKKRPTFFIETNPQAGKHTQWKQLDHDFTGDHASNYRRHTLHF 123

Query: 191 PPGVLGVHYKRLMKNKNLLEVSQKSFPTADSPYF 193
           PPGVL  + ++L+ +    ++ +  FP  +S YF
Sbjct: 124 PPGVLQKNLEKLVTDSFWSKLYEVPFPVHESRYF 157

[Close]

BLAST of Lsi06G000620 vs. NCBI nr
Match: gi|700210920|gb|KGN66016.1| (hypothetical protein Csa_1G561960 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 1.1e-69
Identity = 136/218 (62.39%), Postives = 164/218 (75.23%), Query Frame = 1


Query: 1   MELKKDTQISMKAPFTNLQNIFNGRSLIPLPPTAEEQQQE--YNTESNERTITSGPSSSS 60
           M+L+KDT+I MK PFTNLQ IFNGR+L+PLP   EE+QQ   +NT+SN+RT  SGPSSSS
Sbjct: 1   MDLRKDTEIPMKPPFTNLQRIFNGRTLVPLPQINEEEQQHEYHNTQSNQRTTFSGPSSSS 60

Query: 61  SSHLPYSLFNASPSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRHKI--- 120
            +  P + FNA+P+LFLRIGSWQ VA +E DL+L+FDY+NKK+SWE+V EGPS+HKI   
Sbjct: 61  FAEPPNTPFNAAPALFLRIGSWQVVANSESDLVLKFDYRNKKLSWEVVLEGPSKHKIEIE 120

Query: 121 ---------------------ELQSPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKH 180
                                ELQ+PPRFYKEIE +PLK FKWE E DFT GRAS +RKH
Sbjct: 121 WSNIIGIQAAIEDHRQGILQLELQNPPRFYKEIETRPLKLFKWEEEYDFTQGRASMNRKH 180

Query: 181 FSVFPPGVLGVHYKRLMKNKNLLEVSQKSFPTADSPYF 193
           FSVF PG+LG +YKRLMKNK ++EVSQK FPTA+SPYF
Sbjct: 181 FSVFAPGILGTYYKRLMKNKEMVEVSQKPFPTANSPYF 218

[Close]

BLAST of Lsi06G000620 vs. NCBI nr
Match: gi|659099332|ref|XP_008450546.1| (PREDICTED: uncharacterized protein LOC103492114 isoform X1 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 8.3e-25
Identity = 72/190 (37.89%), Postives = 102/190 (53.68%), Query Frame = 1


Query: 28  IPLPPTAEEQQQEYNTESNERTITSGPSSS-SSSHLPYSLFNASPSLFLRIGSWQAVAKN 87
           + + P+  +Q Q       +R I +  +       L  S+  A   L L+IGSWQ VAKN
Sbjct: 70  LQISPSLLKQMQRSTLSKRKRIINNARTDHHDGERLKASILGA---LMLQIGSWQLVAKN 129

Query: 88  EGDLLLRFDYKNKKISWEIVREG-----------------------PSRHKIELQSPPRF 147
           EGDL+ +F +  +++ WEI+R G                       P   ++EL  PP+F
Sbjct: 130 EGDLVAKFYFAKRQLVWEILRNGLKQKIEIEWSNIIGIQAFLEEDKPGILEVELNHPPKF 189

Query: 148 YKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHYKRLM-KNKNLLEVSQK 193
           YKEIE +P KH +W   SDFT G+A  +R+H  VFPP VL  HY++L  K+K+L E+SQ+
Sbjct: 190 YKEIEPEPRKHTQWTDGSDFTEGQAYVNRRHCIVFPPKVLDKHYEKLKDKDKHLFELSQR 249

[Close]

BLAST of Lsi06G000620 vs. NCBI nr
Match: gi|700210915|gb|KGN66011.1| (hypothetical protein Csa_1G561420 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 2.4e-24
Identity = 71/190 (37.37%), Postives = 102/190 (53.68%), Query Frame = 1


Query: 28  IPLPPTAEEQQQEYNTESNERTITSGPSSS-SSSHLPYSLFNASPSLFLRIGSWQAVAKN 87
           + + P+  +Q Q       +R I +  +       L  S+  A   L L+IGSWQ VAKN
Sbjct: 70  LQISPSLLKQMQRSTLSKRKRIINNARTDHHDGERLKASILGA---LMLQIGSWQLVAKN 129

Query: 88  EGDLLLRFDYKNKKISWEIVREG-----------------------PSRHKIELQSPPRF 147
           EGDL+ +F +  +++ WEI+R G                       P   ++EL  PP+F
Sbjct: 130 EGDLVAKFYFAKRQLVWEILRNGLKQKIEIEWSNIIGIQAFLEEDKPGILEVELNHPPKF 189

Query: 148 YKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHYKRLM-KNKNLLEVSQK 193
           YKEIE +P KH +W   SDFT G+A  +R+H  VFPP VL  HY++L  K+K+L E+S++
Sbjct: 190 YKEIEPEPRKHTQWTDGSDFTEGQAYVNRRHCIVFPPKVLDKHYEKLKDKDKHLFELSRR 249

[Close]

BLAST of Lsi06G000620 vs. NCBI nr
Match: gi|641862999|gb|KDO81686.1| (hypothetical protein CISIN_1g009123mg [Citrus sinensis])

HSP 1 Score: 119.8 bits (299), Expect = 5.4e-24
Identity = 59/146 (40.41%), Postives = 84/146 (57.53%), Query Frame = 1


Query: 71  PSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRH----------------- 130
           P+L LRIGSW+ V ++EGDL+ +  Y  KK+ WE + +   R                  
Sbjct: 136 PALELRIGSWERVTRHEGDLVAKSYYAKKKLVWEFLEKSLKRKIEIQWADIIGIRATAEE 195

Query: 131 ------KIELQSPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHY 190
                 ++EL+ PP F+ EI+ +P KH  W    DFTGG+A   RKH+  FPPGVL  H+
Sbjct: 196 NEPGILELELKQPPTFHHEIDPQPRKHTNWRLTEDFTGGQAPVFRKHYLKFPPGVLDRHF 255

Query: 191 KRLMK-NKNLLEVSQKSFPTADSPYF 193
           ++L++ +  L E+S+K FPT DSPYF
Sbjct: 256 EKLLQCDSRLFELSRKPFPTLDSPYF 281

[Close]

BLAST of Lsi06G000620 vs. NCBI nr
Match: gi|567881943|ref|XP_006433530.1| (hypothetical protein CICLE_v10003523mg [Citrus clementina])

HSP 1 Score: 119.8 bits (299), Expect = 5.4e-24
Identity = 59/146 (40.41%), Postives = 84/146 (57.53%), Query Frame = 1


Query: 71  PSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRH----------------- 130
           P+L LRIGSW+ V ++EGDL+ +  Y  KK+ WE + +   R                  
Sbjct: 136 PALELRIGSWERVTRHEGDLVAKSYYAKKKLVWEFLEKSLKRKIEIQWADIIGIRATTEE 195

Query: 131 ------KIELQSPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHY 190
                 ++EL+ PP F+ EI+ +P KH  W    DFTGG+A   RKH+  FPPGVL  H+
Sbjct: 196 NEPGILELELKQPPTFHHEIDPQPRKHTNWRLTEDFTGGQAPVFRKHYLKFPPGVLDRHF 255

Query: 191 KRLMK-NKNLLEVSQKSFPTADSPYF 193
           ++L++ +  L E+S+K FPT DSPYF
Sbjct: 256 EKLLQCDSRLFELSRKPFPTLDSPYF 281

The following BLAST results are available for this feature:

BLAST of Lsi06G000620 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G000620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1F9_CUCSA	7.7e-70	62.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561960 PE=4 SV=1	[more]
A0A0A0M1F5_CUCSA	1.7e-24	37.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561420 PE=4 SV=1	[more]
A0A067H2D5_CITSI	3.7e-24	40.41	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009123mg PE=4 SV=1	[more]
V4T5S9_9ROSI	3.7e-24	40.41	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003523mg PE=4 SV=1	[more]
A0A022RAG3_ERYGU	4.1e-23	38.41	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a005144mg PE=4 SV=1	[more]

BLAST of Lsi06G000620 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G24100.1	6.8e-17	30.14	unknown protein	[more]
AT4G30780.1	8.8e-17	30.61	unknown protein	[more]
AT3G05770.1	2.9e-12	25.58	unknown protein	[more]
AT1G54300.1	3.2e-11	30.52	unknown protein	[more]

BLAST of Lsi06G000620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210920\|gb\|KGN66016.1\|	1.1e-69	62.39	hypothetical protein Csa_1G561960 [Cucumis sativus]	[more]
gi\|659099332\|ref\|XP_008450546.1\|	8.3e-25	37.89	PREDICTED: uncharacterized protein LOC103492114 isoform X1 [Cucumis melo]	[more]
gi\|700210915\|gb\|KGN66011.1\|	2.4e-24	37.37	hypothetical protein Csa_1G561420 [Cucumis sativus]	[more]
gi\|641862999\|gb\|KDO81686.1\|	5.4e-24	40.41	hypothetical protein CISIN_1g009123mg [Citrus sinensis]	[more]
gi\|567881943\|ref\|XP_006433530.1\|	5.4e-24	40.41	hypothetical protein CICLE_v10003523mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G000620.1	Lsi06G000620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33494	FAMILY NOT NAMED	coord: 71..192 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G000620	MELO3C015261	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G000620	CsaV3_1G038320	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G000620	Cucumber (Chinese Long) v2	culsiB136
Lsi06G000620	Cucumber (Chinese Long) v2	culsiB058
Lsi06G000620	Melon (DHL92) v3.5.1	lsimeB416
Lsi06G000620	Watermelon (Charleston Gray)	lsiwcgB359
Lsi06G000620	Watermelon (Charleston Gray)	lsiwcgB362
Lsi06G000620	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G000620	Watermelon (97103) v1	lsiwmB392
Lsi06G000620	Watermelon (97103) v1	lsiwmB396
Lsi06G000620	Watermelon (97103) v1	lsiwmB409
Lsi06G000620	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G000620	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G000620	Watermelon (97103) v2	lsiwmbB365
Lsi06G000620	Wax gourd	lsiwgoB522
Lsi06G000620	Bottle gourd (USVL1VR-Ls)	lsilsiB060
Lsi06G000620	Cucumber (Gy14) v1	cgylsiB033
Lsi06G000620	Cucumber (Gy14) v1	cgylsiB101
Lsi06G000620	Cucurbita maxima (Rimu)	cmalsiB070
Lsi06G000620	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G000620	Cucurbita maxima (Rimu)	cmalsiB133
Lsi06G000620	Cucurbita maxima (Rimu)	cmalsiB142
Lsi06G000620	Cucurbita maxima (Rimu)	cmalsiB178
Lsi06G000620	Cucurbita maxima (Rimu)	cmalsiB734
Lsi06G000620	Cucurbita moschata (Rifu)	cmolsiB062
Lsi06G000620	Cucurbita moschata (Rifu)	cmolsiB122
Lsi06G000620	Cucurbita moschata (Rifu)	cmolsiB168
Lsi06G000620	Cucurbita moschata (Rifu)	cmolsiB723
Lsi06G000620	Cucurbita pepo (Zucchini)	cpelsiB095
Lsi06G000620	Cucurbita pepo (Zucchini)	cpelsiB302
Lsi06G000620	Cucurbita pepo (Zucchini)	cpelsiB560
Lsi06G000620	Cucurbita pepo (Zucchini)	cpelsiB682
Lsi06G000620	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G000620	Wild cucumber (PI 183967)	cpilsiB134