Lsi06G000620.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000620.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_5219
Location	chr06 : 525257 .. 527340 (-)
Sequence length	611

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGTCTCACTTCTCTTCTTGAAGCAATGGAATTAAAAAAGGATACACAAATTTCAATGAAAGCTCCATTTACAAACCTCCAAAATATCTTCAATGGCCGTTCGCTAATCCCTCTCCCTCCCACAGCTGAAGAACAACAACAAGAATACAATACTGAATCAAATGAAAGAACAATCACTTCTGGACCAAGCAGCTCTTCCTCTTCTCACCTTCCCTATTCTCTCTTTAATGCTTCTCCTTCCCTTTTCCTTCGTATTGGATCCTGGCAGGTAACATTTAAAATACTCTCTTCAAAATCACTTTTATCGTATCTGATTGTATGCAGAAATCCCATTAAACCCTAAACCGAGAATCACGTCTTTATTCACTCAAAATAAGACATGTTTTATAGCGATTTTGAATTTAACAAAAGTGATTTTAACTATTTCAAAATCACTAAACTACATAAAAAAAAAAATCAAAAGAAATTGTGTTCTAATATTCATTTTTCTTGTATTTGGTAATTTGATTTTGCAGGCAGTGGCCAAAAATGAAGGTGATCTGCTCCTGAGATTTGATTACAAAAACAAGAAGATATCTTGGGAGATTGTGAGGGAAGGGCCTTCTAGGCACAAGATTGAAGTTGATTGGTCTAATATCATAGGAATTGAAGCTGCCTATGAAGACCATAGACAAGGAATCCTCCAACTTGAGGTATTGAAATTTTGTTATTGCATTTTTAAATGGTTGAGAGTTTGGGTGTAATCACACCCGCAATAATGCACCGGATCTCATCAGAACTCCGTATTTATGCTCATTCGGACGAGAGTAGTACTAAGTTGGATGACCACTTGAAAAGTCCTCGTGGTTGCACCCTTTTATAAAAAAATAAATAACTTGTTGAGAAAGTTTGATATTTGGAGTTAACCCTTTTCAAAATGGTGCACACTTTGTCTGATGTTTTATCTTTCATGTATGAACTTCATTTTTAGAATATATGATCAGGTTATTCTTTTTTTTTTTCATACCCATTTAGTTTTTTTTAGAAAAAATTATTGAAATTTTGATGCTTGAAACCCTTTAAAATTTAGATCATATCACTTTCTTTTAGGGTTTCTTTTTCTTGTACAAATGAGTTGTTCTTTTTTTTGCATAGAAGAACTTTGTGCCCATTGATTTATTGATCACCAATTATTTGGTTTTTTTGTTATTATTTTAAAAAATTAAGACCTAGATGTTTTCAAGCCTTTTCAAAATAGAAAATCTCTGCTATTAAGAAAAAAACCCAAATGAATAGATAACACTTTCTTTAGGGTTCTTTTTTTTTCATTTTTTATTGACTGGTTTGATTTATAGAACAAATTATGATGGTATATTATCTTCTATTCAAAATTAAGGGTTTGTAAATATTAACTTAATGCATATATAATAGTGATAGTAATTTTCCATTTTTTTTCATGTAATATGAATTTTTTAGCAAATAATTTTATTCTTCTTAAAAAAAAAGAAGAAAAAAGAAAAGGAAACAAAGAAATTAAAATTCAATCAATAATCTGAAACTTTTTATAGATTGAATTTCAATAAATTAAAAAATATATGTTCATATTCAATATAAATTGTTGTAATTCTCCCCCTTTTGAAGCTGCAATCACCACCAAGATTTTACAAGGAAATTGAAATCAAACCACTGAAGCATTTCAAATGGGAAGCTGAATCTGATTTTACTGGAGGTAGAGCTTCTACGAGCAGGTAATAATCTCAAAAGATATTAATTAAATTTCATATCTTAACATTTAATGGAATAGAAATTACCAGGTTGAAAATTCTGTTAACATTACAAACATAAGTGAAAATGGATATATACTGAATAACACAAATGAAAGTTTTTTCTTTTTCAACATGTGGGGTTGGGTTTTTCGAACTTCCGACCTCTTTATATACTAATTTAAATGTTTTTATGAATTTTTTTTTTCAGGAAACACTTTTCAGTGTTTCCACCAGGAGTACTTGGTGTACATTATAAGAGACTGATGAAGAACAAGAATTTGTTAGAAGTAAGCCAAAAGTCATTTCCAACAGCTGATTCCCCTTATTTCCCCAAGCAT

mRNA sequence

TTCGTCTCACTTCTCTTCTTGAAGCAATGGAATTAAAAAAGGATACACAAATTTCAATGAAAGCTCCATTTACAAACCTCCAAAATATCTTCAATGGCCGTTCGCTAATCCCTCTCCCTCCCACAGCTGAAGAACAACAACAAGAATACAATACTGAATCAAATGAAAGAACAATCACTTCTGGACCAAGCAGCTCTTCCTCTTCTCACCTTCCCTATTCTCTCTTTAATGCTTCTCCTTCCCTTTTCCTTCGTATTGGATCCTGGCAGGCAGTGGCCAAAAATGAAGGTGATCTGCTCCTGAGATTTGATTACAAAAACAAGAAGATATCTTGGGAGATTGTGAGGGAAGGGCCTTCTAGGCACAAGATTGAACTGCAATCACCACCAAGATTTTACAAGGAAATTGAAATCAAACCACTGAAGCATTTCAAATGGGAAGCTGAATCTGATTTTACTGGAGGTAGAGCTTCTACGAGCAGGAAACACTTTTCAGTGTTTCCACCAGGAGTACTTGGTGTACATTATAAGAGACTGATGAAGAACAAGAATTTGTTAGAAGTAAGCCAAAAGTCATTTCCAACAGCTGATTCCCCTTATTTCCCCAAGCAT

Coding sequence (CDS)

ATGGAATTAAAAAAGGATACACAAATTTCAATGAAAGCTCCATTTACAAACCTCCAAAATATCTTCAATGGCCGTTCGCTAATCCCTCTCCCTCCCACAGCTGAAGAACAACAACAAGAATACAATACTGAATCAAATGAAAGAACAATCACTTCTGGACCAAGCAGCTCTTCCTCTTCTCACCTTCCCTATTCTCTCTTTAATGCTTCTCCTTCCCTTTTCCTTCGTATTGGATCCTGGCAGGCAGTGGCCAAAAATGAAGGTGATCTGCTCCTGAGATTTGATTACAAAAACAAGAAGATATCTTGGGAGATTGTGAGGGAAGGGCCTTCTAGGCACAAGATTGAACTGCAATCACCACCAAGATTTTACAAGGAAATTGAAATCAAACCACTGAAGCATTTCAAATGGGAAGCTGAATCTGATTTTACTGGAGGTAGAGCTTCTACGAGCAGGAAACACTTTTCAGTGTTTCCACCAGGAGTACTTGGTGTACATTATAAGAGACTGATGAAGAACAAGAATTTGTTAGAAGTAAGCCAAAAGTCATTTCCAACAGCTGATTCCCCTTATTTCCCCAAGCAT

Protein sequence

MELKKDTQISMKAPFTNLQNIFNGRSLIPLPPTAEEQQQEYNTESNERTITSGPSSSSSSHLPYSLFNASPSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRHKIELQSPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHYKRLMKNKNLLEVSQKSFPTADSPYFPKH

Homology

[Close]

BLAST of Lsi06G000620.1 vs. TrEMBL
Match: A0A0A0M1F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561960 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 7.7e-70
Identity = 136/218 (62.39%), Postives = 164/218 (75.23%), Query Frame = 1


Query: 1   MELKKDTQISMKAPFTNLQNIFNGRSLIPLPPTAEEQQQE--YNTESNERTITSGPSSSS 60
           M+L+KDT+I MK PFTNLQ IFNGR+L+PLP   EE+QQ   +NT+SN+RT  SGPSSSS
Sbjct: 1   MDLRKDTEIPMKPPFTNLQRIFNGRTLVPLPQINEEEQQHEYHNTQSNQRTTFSGPSSSS 60

Query: 61  SSHLPYSLFNASPSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRHKI--- 120
            +  P + FNA+P+LFLRIGSWQ VA +E DL+L+FDY+NKK+SWE+V EGPS+HKI   
Sbjct: 61  FAEPPNTPFNAAPALFLRIGSWQVVANSESDLVLKFDYRNKKLSWEVVLEGPSKHKIEIE 120

Query: 121 ---------------------ELQSPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKH 180
                                ELQ+PPRFYKEIE +PLK FKWE E DFT GRAS +RKH
Sbjct: 121 WSNIIGIQAAIEDHRQGILQLELQNPPRFYKEIETRPLKLFKWEEEYDFTQGRASMNRKH 180

Query: 181 FSVFPPGVLGVHYKRLMKNKNLLEVSQKSFPTADSPYF 193
           FSVF PG+LG +YKRLMKNK ++EVSQK FPTA+SPYF
Sbjct: 181 FSVFAPGILGTYYKRLMKNKEMVEVSQKPFPTANSPYF 218

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BLAST of Lsi06G000620.1 vs. TrEMBL
Match: A0A0A0M1F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561420 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-24
Identity = 71/190 (37.37%), Postives = 102/190 (53.68%), Query Frame = 1


Query: 28  IPLPPTAEEQQQEYNTESNERTITSGPSSS-SSSHLPYSLFNASPSLFLRIGSWQAVAKN 87
           + + P+  +Q Q       +R I +  +       L  S+  A   L L+IGSWQ VAKN
Sbjct: 70  LQISPSLLKQMQRSTLSKRKRIINNARTDHHDGERLKASILGA---LMLQIGSWQLVAKN 129

Query: 88  EGDLLLRFDYKNKKISWEIVREG-----------------------PSRHKIELQSPPRF 147
           EGDL+ +F +  +++ WEI+R G                       P   ++EL  PP+F
Sbjct: 130 EGDLVAKFYFAKRQLVWEILRNGLKQKIEIEWSNIIGIQAFLEEDKPGILEVELNHPPKF 189

Query: 148 YKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHYKRLM-KNKNLLEVSQK 193
           YKEIE +P KH +W   SDFT G+A  +R+H  VFPP VL  HY++L  K+K+L E+S++
Sbjct: 190 YKEIEPEPRKHTQWTDGSDFTEGQAYVNRRHCIVFPPKVLDKHYEKLKDKDKHLFELSRR 249

[Close]

BLAST of Lsi06G000620.1 vs. TrEMBL
Match: A0A067H2D5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009123mg PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-24
Identity = 59/146 (40.41%), Postives = 84/146 (57.53%), Query Frame = 1


Query: 71  PSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRH----------------- 130
           P+L LRIGSW+ V ++EGDL+ +  Y  KK+ WE + +   R                  
Sbjct: 136 PALELRIGSWERVTRHEGDLVAKSYYAKKKLVWEFLEKSLKRKIEIQWADIIGIRATAEE 195

Query: 131 ------KIELQSPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHY 190
                 ++EL+ PP F+ EI+ +P KH  W    DFTGG+A   RKH+  FPPGVL  H+
Sbjct: 196 NEPGILELELKQPPTFHHEIDPQPRKHTNWRLTEDFTGGQAPVFRKHYLKFPPGVLDRHF 255

Query: 191 KRLMK-NKNLLEVSQKSFPTADSPYF 193
           ++L++ +  L E+S+K FPT DSPYF
Sbjct: 256 EKLLQCDSRLFELSRKPFPTLDSPYF 281

[Close]

BLAST of Lsi06G000620.1 vs. TrEMBL
Match: V4T5S9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003523mg PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-24
Identity = 59/146 (40.41%), Postives = 84/146 (57.53%), Query Frame = 1


Query: 71  PSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRH----------------- 130
           P+L LRIGSW+ V ++EGDL+ +  Y  KK+ WE + +   R                  
Sbjct: 136 PALELRIGSWERVTRHEGDLVAKSYYAKKKLVWEFLEKSLKRKIEIQWADIIGIRATTEE 195

Query: 131 ------KIELQSPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHY 190
                 ++EL+ PP F+ EI+ +P KH  W    DFTGG+A   RKH+  FPPGVL  H+
Sbjct: 196 NEPGILELELKQPPTFHHEIDPQPRKHTNWRLTEDFTGGQAPVFRKHYLKFPPGVLDRHF 255

Query: 191 KRLMK-NKNLLEVSQKSFPTADSPYF 193
           ++L++ +  L E+S+K FPT DSPYF
Sbjct: 256 EKLLQCDSRLFELSRKPFPTLDSPYF 281

[Close]

BLAST of Lsi06G000620.1 vs. TrEMBL
Match: A0A022RAG3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a005144mg PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.1e-23
Identity = 63/164 (38.41%), Postives = 93/164 (56.71%), Query Frame = 1


Query: 54  PSSSSSSHLPYSLFNASPSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRH 113
           PSSS S  L  S F   P++F+ IGSWQ   ++EGDL  +  Y  +K+ WE++ +G  + 
Sbjct: 116 PSSSISEKLKASNF---PAVFINIGSWQRCTRHEGDLTAKLYYAKRKLVWEVL-DGALKS 175

Query: 114 KIELQ------------------------SPPRFYKEIEIKPLKHFKWEAESDFTGGRAS 173
           KIE+Q                        +PP +Y+EI  +P KH  W+  SDFTGG+A 
Sbjct: 176 KIEIQWSDIIGIRAILPDNEHGTLEIELNNPPLYYREINPQPRKHTLWQQSSDFTGGQAP 235

Query: 174 TSRKHFSVFPPGVLGVHYKRLMK-NKNLLEVSQKSFPTADSPYF 193
             R+H+  FP G+L  HY++L++ ++ L  +SQK FPT +S YF
Sbjct: 236 IWRRHYVKFPAGILDKHYEKLLQCDERLFALSQKPFPTCESAYF 275

[Close]

BLAST of Lsi06G000620.1 vs. TAIR10
Match: AT2G24100.1 (AT2G24100.1 unknown protein)

HSP 1 Score: 84.7 bits (208), Expect = 6.8e-17
Identity = 44/146 (30.14%), Postives = 75/146 (51.37%), Query Frame = 1


Query: 71  PSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREG--------------------- 130
           P+  LRIG W+  ++ EGDL+ +  +   K+ WE++ +G                     
Sbjct: 115 PATILRIGQWEYKSRYEGDLVAKCYFAKHKLVWEVLEQGLKSKIEIQWSDIMALKANLPE 174

Query: 131 --PSRHKIELQSPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHY 190
             P    I L   P F++E   +P KH  W+A SDFT G+AS +R+HF   PPG++  H+
Sbjct: 175 DEPGTLTIVLARRPLFFRETNPQPRKHTLWQATSDFTDGQASMNRQHFLQCPPGIMNKHF 234

Query: 191 KRLMK-NKNLLEVSQKSFPTADSPYF 193
           ++L++ +  L  +S++      +P+F
Sbjct: 235 EKLVQCDHRLFCLSRQPEINLAAPFF 260

[Close]

BLAST of Lsi06G000620.1 vs. TAIR10
Match: AT4G30780.1 (AT4G30780.1 unknown protein)

HSP 1 Score: 84.3 bits (207), Expect = 8.8e-17
Identity = 45/147 (30.61%), Postives = 77/147 (52.38%), Query Frame = 1


Query: 71  PSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRHKIELQ------------ 130
           P+  L+IG W+  ++ EGDL+ +  +   K+ WE++ +G  + KIE+Q            
Sbjct: 142 PASLLKIGQWEYKSRYEGDLVAKCYFAKHKLVWEVLEQG-LKSKIEIQWSDIMALKANCP 201

Query: 131 ------------SPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVH 190
                         P F++E   +P KH  W+A SDFT G+AS +R+HF     G++  H
Sbjct: 202 EDGPGTLTLVLARQPLFFRETNPQPRKHTLWQATSDFTDGQASMNRQHFLQCAQGIMNKH 261

Query: 191 YKRLMK-NKNLLEVSQKSFPTADSPYF 193
           +++L++ +  L  +S++     DSPYF
Sbjct: 262 FEKLVQCDHRLFHLSRQPEIAIDSPYF 287

[Close]

BLAST of Lsi06G000620.1 vs. TAIR10
Match: AT3G05770.1 (AT3G05770.1 unknown protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.9e-12
Identity = 55/215 (25.58%), Postives = 93/215 (43.26%), Query Frame = 1


Query: 11  MKAPFTNLQNIFNG-RSLIPLPPTAEEQQQEYNTESNERTITSGPSSSSSSHLPYSLFNA 70
           +  P T    + N   S + +  T   QQ E +++++  T+   P    + + P S    
Sbjct: 26  LNLPLTKTPELINKIESYLKVHYTCPHQQTENSSKTS--TLPKSPEKLKAMNFPIST--- 85

Query: 71  SPSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRH---------------- 130
                ++IG    VAKN  D++ +F +  KK+ WE +   P  +                
Sbjct: 86  -----IKIGDCVFVAKNPDDIVAKFYFAKKKLLWEFLFGEPVANMPRLKSKIEIQWNDVS 145

Query: 131 ---------------KIELQSPPRFYKEIEIKPLKHFKW-EAESDFTGGRASTSRKHFSV 190
                          KIEL+  P F+ E   +  KH +W + + DFTG +AS  R+H   
Sbjct: 146 SFEESINSRDETGILKIELKKRPTFFTETNPQAGKHTQWKQLDYDFTGDQASYYRRHTLH 205

Query: 191 FPPGVLGVHYKRLMKNKNLLEVSQKSFPTADSPYF 193
           FPPGVL  + ++L+ +    ++ +  FP  +S YF
Sbjct: 206 FPPGVLQKNLEKLLTDSFWSKLYKVPFPVHESLYF 230

[Close]

BLAST of Lsi06G000620.1 vs. TAIR10
Match: AT1G54300.1 (AT1G54300.1 unknown protein)

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-11
Identity = 47/154 (30.52%), Postives = 69/154 (44.81%), Query Frame = 1


Query: 71  PSLFLRIGSWQAVAKNEGDLLLRF---------------------DYKNK-KISWEIV-- 130
           P   +RIG W  VAKN  D++ +F                       K K +I W  V  
Sbjct: 4   PISTIRIGGWVVVAKNPDDIVAKFYFAKKKLIWEFLFGEPETNTLRLKRKIEIQWNDVSS 63

Query: 131 -------REGPSRHKIELQSPPRFYKEIEIKPLKHFKW-EAESDFTGGRASTSRKHFSVF 190
                  R+     KIEL+  P F+ E   +  KH +W + + DFTG  AS  R+H   F
Sbjct: 64  FEESISSRDETGILKIELKKRPTFFIETNPQAGKHTQWKQLDHDFTGDHASNYRRHTLHF 123

Query: 191 PPGVLGVHYKRLMKNKNLLEVSQKSFPTADSPYF 193
           PPGVL  + ++L+ +    ++ +  FP  +S YF
Sbjct: 124 PPGVLQKNLEKLVTDSFWSKLYEVPFPVHESRYF 157

[Close]

BLAST of Lsi06G000620.1 vs. NCBI nr
Match: gi|700210920|gb|KGN66016.1| (hypothetical protein Csa_1G561960 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 1.1e-69
Identity = 136/218 (62.39%), Postives = 164/218 (75.23%), Query Frame = 1


Query: 1   MELKKDTQISMKAPFTNLQNIFNGRSLIPLPPTAEEQQQE--YNTESNERTITSGPSSSS 60
           M+L+KDT+I MK PFTNLQ IFNGR+L+PLP   EE+QQ   +NT+SN+RT  SGPSSSS
Sbjct: 1   MDLRKDTEIPMKPPFTNLQRIFNGRTLVPLPQINEEEQQHEYHNTQSNQRTTFSGPSSSS 60

Query: 61  SSHLPYSLFNASPSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRHKI--- 120
            +  P + FNA+P+LFLRIGSWQ VA +E DL+L+FDY+NKK+SWE+V EGPS+HKI   
Sbjct: 61  FAEPPNTPFNAAPALFLRIGSWQVVANSESDLVLKFDYRNKKLSWEVVLEGPSKHKIEIE 120

Query: 121 ---------------------ELQSPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKH 180
                                ELQ+PPRFYKEIE +PLK FKWE E DFT GRAS +RKH
Sbjct: 121 WSNIIGIQAAIEDHRQGILQLELQNPPRFYKEIETRPLKLFKWEEEYDFTQGRASMNRKH 180

Query: 181 FSVFPPGVLGVHYKRLMKNKNLLEVSQKSFPTADSPYF 193
           FSVF PG+LG +YKRLMKNK ++EVSQK FPTA+SPYF
Sbjct: 181 FSVFAPGILGTYYKRLMKNKEMVEVSQKPFPTANSPYF 218

[Close]

BLAST of Lsi06G000620.1 vs. NCBI nr
Match: gi|659099332|ref|XP_008450546.1| (PREDICTED: uncharacterized protein LOC103492114 isoform X1 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 8.3e-25
Identity = 72/190 (37.89%), Postives = 102/190 (53.68%), Query Frame = 1


Query: 28  IPLPPTAEEQQQEYNTESNERTITSGPSSS-SSSHLPYSLFNASPSLFLRIGSWQAVAKN 87
           + + P+  +Q Q       +R I +  +       L  S+  A   L L+IGSWQ VAKN
Sbjct: 70  LQISPSLLKQMQRSTLSKRKRIINNARTDHHDGERLKASILGA---LMLQIGSWQLVAKN 129

Query: 88  EGDLLLRFDYKNKKISWEIVREG-----------------------PSRHKIELQSPPRF 147
           EGDL+ +F +  +++ WEI+R G                       P   ++EL  PP+F
Sbjct: 130 EGDLVAKFYFAKRQLVWEILRNGLKQKIEIEWSNIIGIQAFLEEDKPGILEVELNHPPKF 189

Query: 148 YKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHYKRLM-KNKNLLEVSQK 193
           YKEIE +P KH +W   SDFT G+A  +R+H  VFPP VL  HY++L  K+K+L E+SQ+
Sbjct: 190 YKEIEPEPRKHTQWTDGSDFTEGQAYVNRRHCIVFPPKVLDKHYEKLKDKDKHLFELSQR 249

[Close]

BLAST of Lsi06G000620.1 vs. NCBI nr
Match: gi|700210915|gb|KGN66011.1| (hypothetical protein Csa_1G561420 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 2.4e-24
Identity = 71/190 (37.37%), Postives = 102/190 (53.68%), Query Frame = 1


Query: 28  IPLPPTAEEQQQEYNTESNERTITSGPSSS-SSSHLPYSLFNASPSLFLRIGSWQAVAKN 87
           + + P+  +Q Q       +R I +  +       L  S+  A   L L+IGSWQ VAKN
Sbjct: 70  LQISPSLLKQMQRSTLSKRKRIINNARTDHHDGERLKASILGA---LMLQIGSWQLVAKN 129

Query: 88  EGDLLLRFDYKNKKISWEIVREG-----------------------PSRHKIELQSPPRF 147
           EGDL+ +F +  +++ WEI+R G                       P   ++EL  PP+F
Sbjct: 130 EGDLVAKFYFAKRQLVWEILRNGLKQKIEIEWSNIIGIQAFLEEDKPGILEVELNHPPKF 189

Query: 148 YKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHYKRLM-KNKNLLEVSQK 193
           YKEIE +P KH +W   SDFT G+A  +R+H  VFPP VL  HY++L  K+K+L E+S++
Sbjct: 190 YKEIEPEPRKHTQWTDGSDFTEGQAYVNRRHCIVFPPKVLDKHYEKLKDKDKHLFELSRR 249

[Close]

BLAST of Lsi06G000620.1 vs. NCBI nr
Match: gi|641862999|gb|KDO81686.1| (hypothetical protein CISIN_1g009123mg [Citrus sinensis])

HSP 1 Score: 119.8 bits (299), Expect = 5.4e-24
Identity = 59/146 (40.41%), Postives = 84/146 (57.53%), Query Frame = 1


Query: 71  PSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRH----------------- 130
           P+L LRIGSW+ V ++EGDL+ +  Y  KK+ WE + +   R                  
Sbjct: 136 PALELRIGSWERVTRHEGDLVAKSYYAKKKLVWEFLEKSLKRKIEIQWADIIGIRATAEE 195

Query: 131 ------KIELQSPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHY 190
                 ++EL+ PP F+ EI+ +P KH  W    DFTGG+A   RKH+  FPPGVL  H+
Sbjct: 196 NEPGILELELKQPPTFHHEIDPQPRKHTNWRLTEDFTGGQAPVFRKHYLKFPPGVLDRHF 255

Query: 191 KRLMK-NKNLLEVSQKSFPTADSPYF 193
           ++L++ +  L E+S+K FPT DSPYF
Sbjct: 256 EKLLQCDSRLFELSRKPFPTLDSPYF 281

[Close]

BLAST of Lsi06G000620.1 vs. NCBI nr
Match: gi|567881943|ref|XP_006433530.1| (hypothetical protein CICLE_v10003523mg [Citrus clementina])

HSP 1 Score: 119.8 bits (299), Expect = 5.4e-24
Identity = 59/146 (40.41%), Postives = 84/146 (57.53%), Query Frame = 1


Query: 71  PSLFLRIGSWQAVAKNEGDLLLRFDYKNKKISWEIVREGPSRH----------------- 130
           P+L LRIGSW+ V ++EGDL+ +  Y  KK+ WE + +   R                  
Sbjct: 136 PALELRIGSWERVTRHEGDLVAKSYYAKKKLVWEFLEKSLKRKIEIQWADIIGIRATTEE 195

Query: 131 ------KIELQSPPRFYKEIEIKPLKHFKWEAESDFTGGRASTSRKHFSVFPPGVLGVHY 190
                 ++EL+ PP F+ EI+ +P KH  W    DFTGG+A   RKH+  FPPGVL  H+
Sbjct: 196 NEPGILELELKQPPTFHHEIDPQPRKHTNWRLTEDFTGGQAPVFRKHYLKFPPGVLDRHF 255

Query: 191 KRLMK-NKNLLEVSQKSFPTADSPYF 193
           ++L++ +  L E+S+K FPT DSPYF
Sbjct: 256 EKLLQCDSRLFELSRKPFPTLDSPYF 281

The following BLAST results are available for this feature:

BLAST of Lsi06G000620.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G000620.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1F9_CUCSA	7.7e-70	62.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561960 PE=4 SV=1	[more]
A0A0A0M1F5_CUCSA	1.7e-24	37.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561420 PE=4 SV=1	[more]
A0A067H2D5_CITSI	3.7e-24	40.41	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009123mg PE=4 SV=1	[more]
V4T5S9_9ROSI	3.7e-24	40.41	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003523mg PE=4 SV=1	[more]
A0A022RAG3_ERYGU	4.1e-23	38.41	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a005144mg PE=4 SV=1	[more]

BLAST of Lsi06G000620.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G24100.1	6.8e-17	30.14	unknown protein	[more]
AT4G30780.1	8.8e-17	30.61	unknown protein	[more]
AT3G05770.1	2.9e-12	25.58	unknown protein	[more]
AT1G54300.1	3.2e-11	30.52	unknown protein	[more]

BLAST of Lsi06G000620.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210920\|gb\|KGN66016.1\|	1.1e-69	62.39	hypothetical protein Csa_1G561960 [Cucumis sativus]	[more]
gi\|659099332\|ref\|XP_008450546.1\|	8.3e-25	37.89	PREDICTED: uncharacterized protein LOC103492114 isoform X1 [Cucumis melo]	[more]
gi\|700210915\|gb\|KGN66011.1\|	2.4e-24	37.37	hypothetical protein Csa_1G561420 [Cucumis sativus]	[more]
gi\|641862999\|gb\|KDO81686.1\|	5.4e-24	40.41	hypothetical protein CISIN_1g009123mg [Citrus sinensis]	[more]
gi\|567881943\|ref\|XP_006433530.1\|	5.4e-24	40.41	hypothetical protein CICLE_v10003523mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi06G000620	Lsi06G000620	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G000620.1.CDS.4	Lsi06G000620.1.CDS.4	CDS
Lsi06G000620.1.CDS.3	Lsi06G000620.1.CDS.3	CDS
Lsi06G000620.1.CDS.2	Lsi06G000620.1.CDS.2	CDS
Lsi06G000620.1.CDS.1	Lsi06G000620.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G000620.1.five_prime_UTR.1	Lsi06G000620.1.five_prime_UTR.1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi06G000620.1	Lsi06G000620.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33494	FAMILY NOT NAMED	coord: 71..192 score: 3.9