Lsi10G009300.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATATTACGACCAACCTCACCAACACAAAACACACAACATTAATCAAATCAAATTAAAAAAAAAAAAAATATATATATATATATATATATATAATAATAATATGTCATCCAAACATTACCGAACATATGAAGATTTCGAACCTCCGGTGGAGCGGTCGGAAGAGGACGGCTGCATCATTCTCACCCTCTACATTCCTGGTTTGTCCCTCTAATTATATCCAATATTTTTCTTCTTTCTCATTATTAAGCTGATTTAATATTGTGTTGGAATAAATAATACAGACACTTTTTAATTCTCTAATCACTTTTTTTTTTCAAAAATTAATATTAATTTATGTATACTCGACTTTTTTGAATAATACAGAAGAATTTGCAAATATAACAAAATTTAGATTCAACTCTTAAGGGTTATTTAGGAGGCTGAAATGTAATCAGGATTACTAGAAATTAGAGGGATATTGGAATGCGTAAAGTATCGAGGGCGGAACAAAAATGGGATCATGAAATGTCAAAATGGTGGGAAAGATAGTTTAGTTAAAAATTGTCGAGACAGAATGAGTTTAATATTACAAATTGGGCCCAAAACACTCAATCTAAACATGGGTTTTTTATTACATTATAATCCAAACTCATTCCATTACGGACCCCCAAACAATCTTTAGAGTCTACCAGTGATAGACCATATTGTTAAGAGGAGTCTATTAGTGATCAATTTTGTTATATTCTAAAAAATATTGCTATGCACTTAATTATTGACCTTAAAAGTGTTTTCATTGCAATTTTTTTTTTCTAGAGAATGTTTATTGGGTCTTTAAGACATCAAATGGAAAGAGAGTTAAAATAAGGGTAATTGTAATGAGTAGCAATTTTAGAGATAATAATCAAGTGTATAGCAACATTTTAAAAAAATACTGATAGATTTTGCTATATTTATAATTTTTATAAAAATGTTGTTATATATGCTAATACTTTTAATCTAATTGTTATATTTGCAATTGTCCCTTAAAATAATTAATATAATTAAATTAATAATGTGGCTTGAAATTCTAAGGTATTATTTTAAATTGTTATGTTAAATATCAATTTATACTCCTAAATCAATCTAATAATTGTATCAATTAGTGAATATCATGAACATAAGTTAATTGACCTAAAAGTTGTAGTATTAACTGATTCTCCCATCTCCCATCTATCTTATGAATTAAAATTGAAGCGTTTTAATTAGTCGTTAAATGGAATTGTTCATTTTAAATTGAAACAATTGCAAATATAGCAACCACATTCAAATTAGTATTAACATATATAACATTTTTAAAAAATTACGAATATAGCAGAATCTATCAGCAACGAAGTCTATCACTAATAAACTTTGCAATATTTGTAATTTTTTTAAAATATTGCTATACACTTAGTTATTATCTTTAAAATTGTTACTCATTATAATTATCATTTTAAGTTAGGTTATGATTTTGAAAATACATGTACTGCCATGCAGGTTTCAGTAAGGAGCAAATTCAAGTTCAAGTATCCTCAAGAAAAAAGCTGAGGATTAGTGGGGAGAGGGCTTACAAGAACAGCAAGCACGCATGGCAGCGCTTTCACACGGAGTTTGAAATCCCATCAAACTGCGACACTGCCAAAATTACTGCCAAATACAAGGCCGGAGTCCTTCATGTCCTGCAACCGATATTATTGCAGGACAACCAGTCCAAGCCACACACAGAACAAACTGAGAAGCCAAATTTGGAACAAACAAACCAAACTACTAATTCCGCTGCTGCCATTACCAACGATGACGCACCACTTACAGACACTCCGAATATTAACAAGAAGCTTACAGTTCCGGCAGGACCACGCTTGAAGGAGGTGATTCCCGGAGTGTTTCTCAAGTTGGTTTTGCCTATTTTGCTGGCAGTTGTTCTGTTAATGTTTTGGTATGCTAAGAGGCTGAGCTCCACCGTGTCTGTCGGAATACTCGGAGAACCTCCACTGTGATTCCTTTGCTAGCGTATTAGATAACATGGGGTTCCATTTCAAAAAAACTAATTGCAACGAAAGGAGTAGCACTGATCTATCTTAATAAGAGTGTGAGATCTTTTGATTTTTTCGATATGGATTCCTCAACATGTCGTTTTCACAAATTCTGTAACAATAATAAAAAAAAAACATTGTAGCTATATTATTCTTTATTGTCATATAATTTATACTGCATCAACTAATAAAAATAACATGAAAGCTAGTGGGCATGTAACGCCCGAGTTTAGGAGGAGAACATGAATGGACCGAAATCACATTTGAATGAGAGAGTCCTGAGGACATGAAAGTATGGTTAAGAAATACTTAAAATAAATCAAAGTTATTACCTATACCAACAAGATGCGTGCTTAGTTTGGGTCAATAATTTAAAAATATATAAAATTTGGGAAGATTACATAATATTTATAAAATTACTAGAATTTTAGTGTAATCTCTCCGACATGTATCGAGATGTACTGAAAAAGCCCAAAACAATCAATAAGTTAGGAAAAAATTGATTTTTTAACTAAAGTTCGGTGGTTGATCTCGCTCGAAATAGACCGAGAAAAGTTGTTTGAACAAATTTTTAAAAATGCTGCTAATTTTGTAAGATGAAAACTTTGATGGACTATTTCTCACACTCAATTTAAGCTTTTCGGTCCATTAATAAATTGTTTATCAAGTTTTTAAAATTGGGTAAAAATATTTCATAAAACCTTGTCTACCTCTATGGAAAGAATTATGAAATAAATACACAAATTAGTAAGTCTACATGCAATTAAATAAACTTAAATAAAAACGAGCATCGAATAATATTTCAATTTTCCCTTAAAAGAGAATATTCATTCAATTTTAATTGAGAGTATCTACCAATTAATATAATATATATCAGTCATTAATGTTTAGAATCGAATTTGTTTTCAATTTACGATTTTAGAGTTCATGTTTTTTTTTTCTTTCTTTTTTATAAAGTTCTTACCAATTATTGTTTGAATCATTCTACATCCAAAAAGTAGGACTGCAAGTCAACCAAAAAAAAAATCCAAAAATCAAATCAAATCAAATCAATACCCTAATTCATGTTGGTTCAATTTTTTTAGTATAAACTTGGACACTTAGGTTTATATTTGGAGAGAGAAAAAAACTACTAGTTTTGGACCGGTTTTTTATTTAAAAAATAAATAAAAATTGAACCGAACCGAAAGGATATATATATACTCTTTTAGTATTTTAATTATTGTAATGTATATATATTTGTTCGTTAGAAAAAGGTTCAAATCATGGTGCAGTCGCATATATGTTTGTTATTTAGAAAATGGTTAGTGTCCAATTTCAACGAGTAAATAAATAATAGACTCAATTTTAATTTTTTTTAAAAAAAAAAAAAAAAGAAAAAAGATCCAACATAAAATAAAAGTGAAAATAAAAATAAAAAAAATAAAAGAAAAAACAGGCTCAAAACTCAAAACCAAATCGAATCAAACAAAAGTGAATTCATCTTTCATTAGACTTCGGTTTGGTTCCCTTCTTAATAAAATTAAACAATTTGGTTGAATTTTTTATTAACCTCAAGAACGAGAAAATCAACTTACTTTCACCCCTACCAAAACGTACTAACGAAACTAAAAAAATATAAATTACAAATTTAACAATTTTATGGGACTCTACGTTTCATTTGATTCTTAAATTTCAATTTGTACGGTTTACGGCCTTTAAGTTTTTACTAATGCTCACTTTTGGAATTTAAAATTAACTTTTAGTTTATTAATTGGGTAATTGTTTTAAATGACAAAACTATTAGAACTATTTTCAAATATAGTAAATTGTCACATGTCACTAATAGATACATTTTGCCATATTTATAAATAAGTTAGTTTATTTTACCATATTCAAATATGGTAAAATAAACTAACTTAAAGGTAAAAAGTGATAGAAAGTGTAATTCTGGAAACTTTGGGAATTAGAATAAAACTAATAATAAAAGTGTAGTATTCTAAAACGAGAAAACCTATGATATAGTTGAAAATGATTAATATTTGGTCATTTTTTAAAAGTAATAAATAATAATGAAACAATTTGATTGGATGCTTCAGAGTAATTTTAAAATGACTAAAATTACTTTTGTCATTTTTAAAAGGGAAACTTTTTAAAAATAGAAAAAAAAACTATTTAAACAAAATAGCAAACTTTTTAGATAGTTGTAATAGACGTTGATATAAGCCTATCAGAGTCTTACTAGTGATAGAAATGATAGAAATGTCTATCAGTATTTTTTTTTTTTTTTACTATTTTCTATAAATAGTTTGACTTTTTTCTATCTGTGAAAATTTTCTTTATAAAATATATTTTTAATCATTTAAAACTAATTTTAATGATTAAAAAATATATTTAAAAGTATAAAATTAAAAATTAAATTAATTTTAAAGAATTAAGGTATATTTTTAAGTAATTTTTAAAATGATAAAAGTGATTTTACTTTAAAAGACCGTCCGAGAAATTTGTCATCGTGACCGTACAAAATTGAGAACAAATAGCGAGGGGAGACATACAAAAGTACCAAACCAGCCTCGGAGAACTCCCTGAAATCCGCGTAAAGTAAGGGTACTTTTGTAATAACAAACATATATTAATTAAAATTACGGAATTTCAAGGTGGATAGAACATATAAATAGCCAAAAACGCGTTAGGGTTGCGCATTACGGACTCATCTTCCGCCCCCAATTTCCAATACATCACTCTCTTTCTGCTTCTTCCCCTCACTTCTCTGCAGGCACAAGCTTCGGTTCCTCCACGCTCCACTCAATGTTGCATTGTTCTCACTGCCTCATACACCGCCAACCCGATCGCTTCGATGACTTCGTGTGAGAATTCGCTCCGATCATCTTCGCTTTTGTGTCCTCTTCTCTGCGCATATTGATCTCCTCGTCATTGTTCTCATTGCTTCTCGTTTTTAATCTGTTTTGTTCTTCGGATTGATCCGACCTTTTTTGTGTGTGTGTTTGTGCCTGTAGCAAATCGGATGTTAATTGCTTGTTCGTATTTGATTTATGCGTATTTTGTCCTTTGGTTGAAATCGATCCGTTGTTTTTAATAATTTTGACATTGATTGGCAGATGTTGTTCGGGCTGCGGCAAGGTGCTTGGTCAGTTCTTTGGAGGAAAATTCATTGATCATAACAAACCTATACTCCGAACCGTCACCAAATTGAAGAAGAAGAAGAAGGAGAAGAAGCAGCAACTCGAGAAGATTGGAATGGATACTGCGAATCAACTCGCAACATAATTTTATTTCCACGGCAATTTTGACTAATACTGGACTTAAAATTCAACCATTATTTTAATTATTACTTTTTTCTTTTTTATCAAATCATTTTGAAAGAAACCGTTTTCTGAGATATTGATCATCTCTGGCGTTCTTTAATTCCAGTTTGGTGCTCATTTTGCTCACAATCAATAATGACTTTCTCCTAGAAATTGGAATAATTTCTTAACAAGAATGCATATTCGCCAACACTTATTGAAAACTTATTAGAATAGGAATCCCTCCCATGGAAAC AATATTACGACCAACCTCACCAACACAAAACACACAACATTAATCAAATCAAATTAAAAAAAAAAAAAATATATATATATATATATATATATAATAATAATATGTCATCCAAACATTACCGAACATATGAAGATTTCGAACCTCCGGTGGAGCGGTCGGAAGAGGACGGCTGCATCATTCTCACCCTCTACATTCCTGCTGAGGATTAGTGGGGAGAGGGCTTACAAGAACAGCAAGCACGCATGGCAGCGCTTTCACACGGAGTTTGAAATCCCATCAAACTGCGACACTGCCAAAATTACTGCCAAATACAAGGCCGGAGTCCTTCATGTCCTGCAACCGATATTATTGCAGGACAACCAGTCCAAGCCACACACAGAACAAACTGAGAAGCCAAATTTGGAACAAACAAACCAAACTACTAATTCCGCTGCTGCCATTACCAACGATGACGCACCACTTACAGACACTCCGAATATTAACAAGAAGCTTACAGTTCCGGCAGGACCACGCTTGAAGGAGGCACAAGCTTCGGTTCCTCCACGCTCCACTCAATGTTGCATTGTTCTCACTGCCTCATACACCGCCAACCCGATCGCTTCGATGACTTCATGTTGTTCGGGCTGCGGCAAGGTGCTTGGTCAGTTCTTTGGAGGAAAATTCATTGATCATAACAAACCTATACTCCGAACCGTCACCAAATTGAAGAAGAAGAAGAAGGAGAAGAAGCAGCAACTCGAGAAGATTGGAATGGATACTGCGAATCAACTCGCAACATAATTTTATTTCCACGGCAATTTTGACTAATACTGGACTTAAAATTCAACCATTATTTTAATTATTACTTTTTTCTTTTTTATCAAATCATTTTGAAAGAAACCGTTTTCTGAGATATTGATCATCTCTGGCGTTCTTTAATTCCAGTTTGGTGCTCATTTTGCTCACAATCAATAATGACTTTCTCCTAGAAATTGGAATAATTTCTTAACAAGAATGCATATTCGCCAACACTTATTGAAAACTTATTAGAATAGGAATCCCTCCCATGGAAAC ATGAAGATTTCGAACCTCCGGTGGAGCGGTCGGAAGAGGACGGCTGCATCATTCTCACCCTCTACATTCCTGCTGAGGATTAGTGGGGAGAGGGCTTACAAGAACAGCAAGCACGCATGGCAGCGCTTTCACACGGAGTTTGAAATCCCATCAAACTGCGACACTGCCAAAATTACTGCCAAATACAAGGCCGGAGTCCTTCATGTCCTGCAACCGATATTATTGCAGGACAACCAGTCCAAGCCACACACAGAACAAACTGAGAAGCCAAATTTGGAACAAACAAACCAAACTACTAATTCCGCTGCTGCCATTACCAACGATGACGCACCACTTACAGACACTCCGAATATTAACAAGAAGCTTACAGTTCCGGCAGGACCACGCTTGAAGGAGGCACAAGCTTCGGTTCCTCCACGCTCCACTCAATGTTGCATTGTTCTCACTGCCTCATACACCGCCAACCCGATCGCTTCGATGACTTCATGTTGTTCGGGCTGCGGCAAGGTGCTTGGTCAGTTCTTTGGAGGAAAATTCATTGATCATAACAAACCTATACTCCGAACCGTCACCAAATTGAAGAAGAAGAAGAAGGAGAAGAAGCAGCAACTCGAGAAGATTGGAATGGATACTGCGAATCAACTCGCAACATAA MKISNLRWSGRKRTAASFSPSTFLLRISGERAYKNSKHAWQRFHTEFEIPSNCDTAKITAKYKAGVLHVLQPILLQDNQSKPHTEQTEKPNLEQTNQTTNSAAAITNDDAPLTDTPNINKKLTVPAGPRLKEAQASVPPRSTQCCIVLTASYTANPIASMTSCCSGCGKVLGQFFGGKFIDHNKPILRTVTKLKKKKKEKKQQLEKIGMDTANQLAT
BLAST of Lsi10G009300.1 vs. TrEMBL
Match: A0A0A0L0C4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269150 PE=4 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 4.9e-17 Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 1
BLAST of Lsi10G009300.1 vs. TrEMBL
Match: A0A0A0L1N9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269140 PE=3 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 2.4e-16 Identity = 56/109 (51.38%), Postives = 69/109 (63.30%), Query Frame = 1
BLAST of Lsi10G009300.1 vs. TrEMBL
Match: A0A0J8BYF2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g171580 PE=3 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 3.0e-06 Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1
BLAST of Lsi10G009300.1 vs. NCBI nr
Match: gi|659097901|ref|XP_008449876.1| (PREDICTED: uncharacterized protein LOC103491622 [Cucumis melo]) HSP 1 Score: 99.4 bits (246), Expect = 8.4e-18 Identity = 62/110 (56.36%), Postives = 74/110 (67.27%), Query Frame = 1
BLAST of Lsi10G009300.1 vs. NCBI nr
Match: gi|700198874|gb|KGN54032.1| (hypothetical protein Csa_4G269150 [Cucumis sativus]) HSP 1 Score: 96.3 bits (238), Expect = 7.1e-17 Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 1
BLAST of Lsi10G009300.1 vs. NCBI nr
Match: gi|449463865|ref|XP_004149651.1| (PREDICTED: uncharacterized protein LOC101219748 [Cucumis sativus]) HSP 1 Score: 94.0 bits (232), Expect = 3.5e-16 Identity = 56/109 (51.38%), Postives = 69/109 (63.30%), Query Frame = 1
BLAST of Lsi10G009300.1 vs. NCBI nr
Match: gi|697141864|ref|XP_009625047.1| (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Nicotiana tomentosiformis]) HSP 1 Score: 61.2 bits (147), Expect = 2.5e-06 Identity = 41/123 (33.33%), Postives = 60/123 (48.78%), Query Frame = 1
BLAST of Lsi10G009300.1 vs. NCBI nr
Match: gi|731348452|ref|XP_010685493.1| (PREDICTED: protein piccolo-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 60.5 bits (145), Expect = 4.3e-06 Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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