Lsi11G014670.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G014670.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ubiquitin family protein
Location	chr11 : 23235541 .. 23235852 (+)
Sequence length	312

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTTGAGGTTGAAGACGATGCGACTGTTTCCGATCTTAGAACCCAGATCACTACCCATCACAACCTCCCTTCTGACCGTCTGATCTTTATTCCTGACCACAATCGCGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATTTCGGTGTCCAAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTCATGATGATGATGGTGATGATCTTGAAGCTCGTCAATTCTTCTTTACTTGTCCTGATCTTCTTCTCTTCTAG

mRNA sequence

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTTGAGGTTGAAGACGATGCGACTGTTTCCGATCTTAGAACCCAGATCACTACCCATCACAACCTCCCTTCTGACCGTCTGATCTTTATTCCTGACCACAATCGCGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATTTCGGTGTCCAAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTCATGATGATGATGGTGATGATCTTGAAGCTCGTCAATTCTTCTTTACTTGTCCTGATCTTCTTCTCTTCTAG

Coding sequence (CDS)

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTTGAGGTTGAAGACGATGCGACTGTTTCCGATCTTAGAACCCAGATCACTACCCATCACAACCTCCCTTCTGACCGTCTGATCTTTATTCCTGACCACAATCGCGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATTTCGGTGTCCAAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTCATGATGATGATGGTGATGATCTTGAAGCTCGTCAATTCTTCTTTACTTGTCCTGATCTTCTTCTCTTCTAG

Protein sequence

MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFIPDHNRDRLICDGDDGISLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFTCPDLLLF

Homology

[Close]

BLAST of Lsi11G014670.1 vs. TrEMBL
Match: A0A0A0K6V6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044270 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 9.8e-40
Identity = 87/107 (81.31%), Postives = 93/107 (86.92%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTH---HNLPSDRLIFIPDHNRDRLICDGD 60
           MKLVVQNLTGSLF+VEVEDDATVSDLRTQI  H   HNLPS RLIFIPDHN +RLI   D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFT-CPDLLLF 104
           DGISLVDFG++DGSHIYIFF PLHDDDGDD+EAR+FFFT   DLLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of Lsi11G014670.1 vs. TrEMBL
Match: M5VZR8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014632mg PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-20
Identity = 58/104 (55.77%), Postives = 73/104 (70.19%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFIPDHNRDRLIC--DGDD 60
           MK+VV+NLTGSLFYV+V ++ATV+DL+ +I T   LP DR+I I   +  RL+   DGDD
Sbjct: 1   MKVVVENLTGSLFYVQVGNNATVADLKREIETQQKLPYDRMILILGADDHRLMTKDDGDD 60

Query: 61  GISLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFTCPDLLL 103
           G+SLVD+GV+D SHIYIFF PL     DD    +F  T PD LL
Sbjct: 61  GVSLVDYGVEDESHIYIFFDPL-----DDGSTHRFLLTWPDSLL 99

[Close]

BLAST of Lsi11G014670.1 vs. TrEMBL
Match: M5XPD8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024078mg PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-18
Identity = 53/91 (58.24%), Postives = 65/91 (71.43%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFI-----PDHNRDRLICD 60
          MK+VV+NLTG+LFYV+V D  TV+DL+ +I     LP DRLIFI      DH+R  LI D
Sbjct: 1  MKVVVENLTGTLFYVQVGDKGTVADLKREIEVQQKLPYDRLIFILDTDDHDHHRCHLIKD 60

Query: 61 GDDGISLVDFGVQDGSHIYIFFCPLHDDDGD 87
            DG+ LVD+GVQDGSH+Y+F  PL  DDGD
Sbjct: 61 DVDGVLLVDYGVQDGSHVYMFVNPL--DDGD 89

[Close]

BLAST of Lsi11G014670.1 vs. TrEMBL
Match: A0A0L9V6P7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g117600 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-18
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MK+VV+NLTG+LFY+EV++DAT  DL+ +I     LPSDRLIF+ D     ++   D+ +
Sbjct: 1   MKVVVENLTGALFYIEVKNDATFEDLKREIEAQEKLPSDRLIFVLDSGECPIMSKEDENL 60

Query: 61  SLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFTCPDL 101
           SL+D G+QDGSHIY+FF  + DD  D+     F FT  DL
Sbjct: 61  SLLDSGIQDGSHIYLFFTSVDDDSTDN-----FRFTSSDL 95

[Close]

BLAST of Lsi11G014670.1 vs. TrEMBL
Match: W9SD66_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018262 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-18
Identity = 53/99 (53.54%), Postives = 69/99 (69.70%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MK+VV+NLTG+LF+++V +DATV++L+ +I    NLP DRLI I D N +R I D   G 
Sbjct: 1   MKVVVENLTGTLFFIQVGNDATVAELKREIEAQENLPCDRLILILDANGNRPINDDGSGA 60

Query: 61  SLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFTCPD 100
           SLVD GV+DGSHI+IFF PL     DD  ++   FT PD
Sbjct: 61  SLVDHGVRDGSHIFIFFNPL-----DDGSSQSRGFTLPD 94

[Close]

BLAST of Lsi11G014670.1 vs. TAIR10
Match: AT2G32360.1 (AT2G32360.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-09
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIF-IPDHNRDRLICDGDDG 60
          MK+ V+ +TG+    +V +DATV  ++ +I     LP  RLI  I D    RL+ + +D 
Sbjct: 1  MKVSVEIITGTFIDTDVSEDATVKQMKEKIAVEVKLPVTRLILVIGDEETRRLVMEDEDD 60

Query: 61 ISLVDFGVQDGSHIYIFF 78
          + L D GV + SHIY+FF
Sbjct: 61 MMLRDLGVGEDSHIYLFF 78

[Close]

BLAST of Lsi11G014670.1 vs. NCBI nr
Match: gi|700188303|gb|KGN43536.1| (hypothetical protein Csa_7G044270 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.4e-39
Identity = 87/107 (81.31%), Postives = 93/107 (86.92%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTH---HNLPSDRLIFIPDHNRDRLICDGD 60
           MKLVVQNLTGSLF+VEVEDDATVSDLRTQI  H   HNLPS RLIFIPDHN +RLI   D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFT-CPDLLLF 104
           DGISLVDFG++DGSHIYIFF PLHDDDGDD+EAR+FFFT   DLLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of Lsi11G014670.1 vs. NCBI nr
Match: gi|595790187|ref|XP_007198846.1| (hypothetical protein PRUPE_ppa014632mg [Prunus persica])

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-20
Identity = 58/104 (55.77%), Postives = 73/104 (70.19%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFIPDHNRDRLIC--DGDD 60
           MK+VV+NLTGSLFYV+V ++ATV+DL+ +I T   LP DR+I I   +  RL+   DGDD
Sbjct: 1   MKVVVENLTGSLFYVQVGNNATVADLKREIETQQKLPYDRMILILGADDHRLMTKDDGDD 60

Query: 61  GISLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFTCPDLLL 103
           G+SLVD+GV+D SHIYIFF PL     DD    +F  T PD LL
Sbjct: 61  GVSLVDYGVEDESHIYIFFDPL-----DDGSTHRFLLTWPDSLL 99

[Close]

BLAST of Lsi11G014670.1 vs. NCBI nr
Match: gi|645245756|ref|XP_008229029.1| (PREDICTED: uncharacterized protein LOC103328418 [Prunus mume])

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-20
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFI--PDHNRDRLICDGDD 60
           MK+VV+NLTGSLFYV+V ++ATV+DL+ +I T   LP DR+I I   D +R  +  DG+D
Sbjct: 1   MKVVVENLTGSLFYVQVGNNATVADLKREIETQQKLPYDRMILILGADDHRLMMKDDGND 60

Query: 61  GISLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFTCPDLLL 103
           G+SLVD+GVQD SHIYIFF PL     DD  + +F  T PD LL
Sbjct: 61  GVSLVDYGVQDESHIYIFFDPL-----DDGSSHRFLLTWPDSLL 99

[Close]

BLAST of Lsi11G014670.1 vs. NCBI nr
Match: gi|920708352|gb|KOM50349.1| (hypothetical protein LR48_Vigan08g117600 [Vigna angularis])

HSP 1 Score: 99.8 bits (247), Expect = 3.0e-18
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 1


Query: 1   MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MK+VV+NLTG+LFY+EV++DAT  DL+ +I     LPSDRLIF+ D     ++   D+ +
Sbjct: 1   MKVVVENLTGALFYIEVKNDATFEDLKREIEAQEKLPSDRLIFVLDSGECPIMSKEDENL 60

Query: 61  SLVDFGVQDGSHIYIFFCPLHDDDGDDLEARQFFFTCPDL 101
           SL+D G+QDGSHIY+FF  + DD  D+     F FT  DL
Sbjct: 61  SLLDSGIQDGSHIYLFFTSVDDDSTDN-----FRFTSSDL 95

[Close]

BLAST of Lsi11G014670.1 vs. NCBI nr
Match: gi|596036528|ref|XP_007219706.1| (hypothetical protein PRUPE_ppa024078mg [Prunus persica])

HSP 1 Score: 99.8 bits (247), Expect = 3.0e-18
Identity = 53/91 (58.24%), Postives = 65/91 (71.43%), Query Frame = 1


Query: 1  MKLVVQNLTGSLFYVEVEDDATVSDLRTQITTHHNLPSDRLIFI-----PDHNRDRLICD 60
          MK+VV+NLTG+LFYV+V D  TV+DL+ +I     LP DRLIFI      DH+R  LI D
Sbjct: 1  MKVVVENLTGTLFYVQVGDKGTVADLKREIEVQQKLPYDRLIFILDTDDHDHHRCHLIKD 60

Query: 61 GDDGISLVDFGVQDGSHIYIFFCPLHDDDGD 87
            DG+ LVD+GVQDGSH+Y+F  PL  DDGD
Sbjct: 61 DVDGVLLVDYGVQDGSHVYMFVNPL--DDGD 89

The following BLAST results are available for this feature:

BLAST of Lsi11G014670.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi11G014670.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6V6_CUCSA	9.8e-40	81.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044270 PE=4 SV=1	[more]
M5VZR8_PRUPE	1.7e-20	55.77	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014632mg PE=4 SV=1	[more]
M5XPD8_PRUPE	2.1e-18	58.24	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024078mg PE=4 SV=1	[more]
A0A0L9V6P7_PHAAN	2.1e-18	50.00	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g117600 PE=4 SV=1	[more]
W9SD66_9ROSA	2.1e-18	53.54	Uncharacterized protein OS=Morus notabilis GN=L484_018262 PE=4 SV=1	[more]

BLAST of Lsi11G014670.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32360.1	2.1e-09	39.74	Ubiquitin-like superfamily protein	[more]

BLAST of Lsi11G014670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188303\|gb\|KGN43536.1\|	1.4e-39	81.31	hypothetical protein Csa_7G044270 [Cucumis sativus]	[more]
gi\|595790187\|ref\|XP_007198846.1\|	2.5e-20	55.77	hypothetical protein PRUPE_ppa014632mg [Prunus persica]	[more]
gi\|645245756\|ref\|XP_008229029.1\|	3.2e-20	55.77	PREDICTED: uncharacterized protein LOC103328418 [Prunus mume]	[more]
gi\|920708352\|gb\|KOM50349.1\|	3.0e-18	50.00	hypothetical protein LR48_Vigan08g117600 [Vigna angularis]	[more]
gi\|596036528\|ref\|XP_007219706.1\|	3.0e-18	58.24	hypothetical protein PRUPE_ppa024078mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000626	Ubiquitin_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi11G014670	Lsi11G014670	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G014670.1.CDS.1	Lsi11G014670.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi11G014670.1	Lsi11G014670.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin domain	PROFILE	PS50053	UBIQUITIN_2	coord: 1..75 score: 10
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 1..75 score: 3.8
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 1..77 score: 6.6
None	No IPR available	PANTHER	PTHR10666:SF154	SUBFAMILY NOT NAMED	coord: 1..77 score: 6.6