Lsi07G010280.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTTTCTAAGAGTATTGGAGCTTAACAAAAGTGCTCGAGAAGAGAGATACTTCATATACTCATTTGTCCCAAAACTCTGGTTTTCACAAATTAATCCCAAAAGTCTTTAACCCCTATTTTGGGCAAATTTTTTTCTGCCTTTTCCTGGATTGTCGTGTGAGCTTGGCGCCCCCTTTCCCAGAGACTATAAATTGGCAGCAATCTGATTGACACTCCTACTGAAAAGAATCTGATGGATATGGAAGCAGTGGCGGAGGGATTGTGGAGGCTGGCAGATTACCACGAGAAGCAGGGGGAATTAGGGAAGGCAATAAAGTGTTTGGAAGCCATATGCCAGAGTCCCGTGTCTTTCTTTCCAGTCGTTGAGGTCAAGACTCGGCTTCGAATTGCCACCCTTCTACTCACTCATTCTCACAACGTCAATCATGCCAAATCCCATCTCGAGCGTTCTGTATGATATATTTTTTTTTATTTTTCACACAACTAATGATGTAGACCAACTATTTTTATTTTTTAATTATCAATGGTGGTTTTTGTTTCCCGGTAGCAATTGTTACTGAAGTCTATTCCATCATGCTTCGAATTGAAGTGCCGGGCTTATAGCTTATTAAGCCAGTGTTATCATCTCGTCGGTGCTATTCCTCCCCAGAAACAGCTTCTTTATAAGGGTCTTGATCTCACCAATTCTGCTGGTCACGAGTAAGCACTCATCCTATTTCCTTATGCCTAATGAATTCTTTTTTCATTTCCGTATGCCTGAATTTTTTGTTTGTTTTTTTTCCTTCTCATTTTTTGTTGTTGTTGGCAATAATGGATTATCCAGCAAATATTTTGCTTTAGTGTTACTTTATCAACTTTACTTATTGCTGTTTTCTTCTTGCACTCATTTAAGACTGTCAGTGAAGCTATGGTCTTGCAACTTCAATTCACAGCTAGCAAATGCTTTGATTATTGAAGGAGACTATCAAAATTCAATCTCTGCCTTGGAGTCGGGATACATACTTTCAGTTGAGATATGCTATCCTGAACTGCAGGTTGGCATCTAA ATTTTCTAAGAGTATTGGAGCTTAACAAAAGTGCTCGAGAAGAGAGATACTTCATATACTCATTTGTCCCAAAACTCTGGTTTTCACAAATTAATCCCAAAAGTCTTTAACCCCTATTTTGGGCAAATTTTTTTCTGCCTTTTCCTGGATTGTCGTGTGAGCTTGGCGCCCCCTTTCCCAGAGACTATAAATTGGCAGCAATCTGATTGACACTCCTACTGAAAAGAATCTGATGGATATGGAAGCAGTGGCGGAGGGATTGTGGAGGCTGGCAGATTACCACGAGAAGCAGGGGGAATTAGGGAAGGCAATAAAGTGTTTGGAAGCCATATGCCAGAGTCCCGTGTCTTTCTTTCCAGTCGTTGAGGTCAAGACTCGGCTTCGAATTGCCACCCTTCTACTCACTCATTCTCACAACGTCAATCATGCCAAATCCCATCTCGAGCGTTCTTCTATTCCATCATGCTTCGAATTGAAGTGCCGGGCTTATAGCTTATTAAGCCAGTGTTATCATCTCGTCGGTGCTATTCCTCCCCAGAAACAGCTTCTTTATAAGGGTCTTGATCTCACCAATTCTGCTGGTCACGAACTGTCAGTGAAGCTATGGTCTTGCAACTTCAATTCACAGCTAGCAAATGCTTTGATTATTGAAGGAGACTATCAAAATTCAATCTCTGCCTTGGAGTCGGGATACATACTTTCAGTTGAGATATGCTATCCTGAACTGCAGGTTGGCATCTAA ATGGATATGGAAGCAGTGGCGGAGGGATTGTGGAGGCTGGCAGATTACCACGAGAAGCAGGGGGAATTAGGGAAGGCAATAAAGTGTTTGGAAGCCATATGCCAGAGTCCCGTGTCTTTCTTTCCAGTCGTTGAGGTCAAGACTCGGCTTCGAATTGCCACCCTTCTACTCACTCATTCTCACAACGTCAATCATGCCAAATCCCATCTCGAGCGTTCTTCTATTCCATCATGCTTCGAATTGAAGTGCCGGGCTTATAGCTTATTAAGCCAGTGTTATCATCTCGTCGGTGCTATTCCTCCCCAGAAACAGCTTCTTTATAAGGGTCTTGATCTCACCAATTCTGCTGGTCACGAACTGTCAGTGAAGCTATGGTCTTGCAACTTCAATTCACAGCTAGCAAATGCTTTGATTATTGAAGGAGACTATCAAAATTCAATCTCTGCCTTGGAGTCGGGATACATACTTTCAGTTGAGATATGCTATCCTGAACTGCAGGTTGGCATCTAA MDMEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERSSIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQVGI
BLAST of Lsi07G010280.1 vs. Swiss-Prot
Match: SCC4_HUMAN (MAU2 chromatid cohesion factor homolog OS=Homo sapiens GN=MAU2 PE=1 SV=2) HSP 1 Score: 52.4 bits (124), Expect = 5.7e-06 Identity = 37/132 (28.03%), Postives = 62/132 (46.97%), Query Frame = 1
BLAST of Lsi07G010280.1 vs. Swiss-Prot
Match: SCC4_MOUSE (MAU2 chromatid cohesion factor homolog OS=Mus musculus GN=Mau2 PE=1 SV=3) HSP 1 Score: 52.4 bits (124), Expect = 5.7e-06 Identity = 37/132 (28.03%), Postives = 62/132 (46.97%), Query Frame = 1
BLAST of Lsi07G010280.1 vs. Swiss-Prot
Match: SCC4_XENTR (MAU2 chromatid cohesion factor homolog OS=Xenopus tropicalis GN=mau2 PE=2 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 5.7e-06 Identity = 37/132 (28.03%), Postives = 62/132 (46.97%), Query Frame = 1
BLAST of Lsi07G010280.1 vs. TrEMBL
Match: A0A0A0L4R7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000010 PE=4 SV=1) HSP 1 Score: 322.0 bits (824), Expect = 4.3e-85 Identity = 159/170 (93.53%), Postives = 163/170 (95.88%), Query Frame = 1
BLAST of Lsi07G010280.1 vs. TrEMBL
Match: A0A151TX81_CAJCA (Cohesin loading complex subunit SCC4 isogeny OS=Cajanus cajan GN=KK1_010828 PE=4 SV=1) HSP 1 Score: 287.7 bits (735), Expect = 9.0e-75 Identity = 138/170 (81.18%), Postives = 155/170 (91.18%), Query Frame = 1
BLAST of Lsi07G010280.1 vs. TrEMBL
Match: V7BAU7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G243600g PE=4 SV=1) HSP 1 Score: 286.6 bits (732), Expect = 2.0e-74 Identity = 138/170 (81.18%), Postives = 154/170 (90.59%), Query Frame = 1
BLAST of Lsi07G010280.1 vs. TrEMBL
Match: A0A0B2S4C3_GLYSO (MAU2 chromatid cohesion factor like OS=Glycine soja GN=glysoja_016910 PE=4 SV=1) HSP 1 Score: 285.4 bits (729), Expect = 4.5e-74 Identity = 137/170 (80.59%), Postives = 153/170 (90.00%), Query Frame = 1
BLAST of Lsi07G010280.1 vs. TrEMBL
Match: I1MBN1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G207300 PE=4 SV=2) HSP 1 Score: 285.4 bits (729), Expect = 4.5e-74 Identity = 137/170 (80.59%), Postives = 153/170 (90.00%), Query Frame = 1
BLAST of Lsi07G010280.1 vs. TAIR10
Match: AT5G51340.1 (AT5G51340.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 224.9 bits (572), Expect = 3.6e-59 Identity = 108/172 (62.79%), Postives = 136/172 (79.07%), Query Frame = 1
BLAST of Lsi07G010280.1 vs. NCBI nr
Match: gi|449456905|ref|XP_004146189.1| (PREDICTED: MAU2 chromatid cohesion factor homolog isoform X1 [Cucumis sativus]) HSP 1 Score: 322.0 bits (824), Expect = 6.2e-85 Identity = 159/170 (93.53%), Postives = 163/170 (95.88%), Query Frame = 1
BLAST of Lsi07G010280.1 vs. NCBI nr
Match: gi|778674503|ref|XP_011650234.1| (PREDICTED: MAU2 chromatid cohesion factor homolog isoform X2 [Cucumis sativus]) HSP 1 Score: 322.0 bits (824), Expect = 6.2e-85 Identity = 159/170 (93.53%), Postives = 163/170 (95.88%), Query Frame = 1
BLAST of Lsi07G010280.1 vs. NCBI nr
Match: gi|700200444|gb|KGN55577.1| (hypothetical protein Csa_3G000010 [Cucumis sativus]) HSP 1 Score: 322.0 bits (824), Expect = 6.2e-85 Identity = 159/170 (93.53%), Postives = 163/170 (95.88%), Query Frame = 1
BLAST of Lsi07G010280.1 vs. NCBI nr
Match: gi|659095143|ref|XP_008448423.1| (PREDICTED: LOW QUALITY PROTEIN: MAU2 chromatid cohesion factor homolog [Cucumis melo]) HSP 1 Score: 322.0 bits (824), Expect = 6.2e-85 Identity = 159/170 (93.53%), Postives = 163/170 (95.88%), Query Frame = 1
BLAST of Lsi07G010280.1 vs. NCBI nr
Match: gi|1012360380|gb|KYP71564.1| (Cohesin loading complex subunit SCC4 isogeny [Cajanus cajan]) HSP 1 Score: 287.7 bits (735), Expect = 1.3e-74 Identity = 138/170 (81.18%), Postives = 155/170 (91.18%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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