Lsi07G010280 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G010280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	MAU2 chromatid cohesion factor like
Location	chr07 : 15594771 .. 15595816 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTCTAAGAGTATTGGAGCTTAACAAAAGTGCTCGAGAAGAGAGATACTTCATATACTCATTTGTCCCAAAACTCTGGTTTTCACAAATTAATCCCAAAAGTCTTTAACCCCTATTTTGGGCAAATTTTTTTCTGCCTTTTCCTGGATTGTCGTGTGAGCTTGGCGCCCCCTTTCCCAGAGACTATAAATTGGCAGCAATCTGATTGACACTCCTACTGAAAAGAATCTGATGGATATGGAAGCAGTGGCGGAGGGATTGTGGAGGCTGGCAGATTACCACGAGAAGCAGGGGGAATTAGGGAAGGCAATAAAGTGTTTGGAAGCCATATGCCAGAGTCCCGTGTCTTTCTTTCCAGTCGTTGAGGTCAAGACTCGGCTTCGAATTGCCACCCTTCTACTCACTCATTCTCACAACGTCAATCATGCCAAATCCCATCTCGAGCGTTCTGTATGATATATTTTTTTTTATTTTTCACACAACTAATGATGTAGACCAACTATTTTTATTTTTTAATTATCAATGGTGGTTTTTGTTTCCCGGTAGCAATTGTTACTGAAGTCTATTCCATCATGCTTCGAATTGAAGTGCCGGGCTTATAGCTTATTAAGCCAGTGTTATCATCTCGTCGGTGCTATTCCTCCCCAGAAACAGCTTCTTTATAAGGGTCTTGATCTCACCAATTCTGCTGGTCACGAGTAAGCACTCATCCTATTTCCTTATGCCTAATGAATTCTTTTTTCATTTCCGTATGCCTGAATTTTTTGTTTGTTTTTTTTCCTTCTCATTTTTTGTTGTTGTTGGCAATAATGGATTATCCAGCAAATATTTTGCTTTAGTGTTACTTTATCAACTTTACTTATTGCTGTTTTCTTCTTGCACTCATTTAAGACTGTCAGTGAAGCTATGGTCTTGCAACTTCAATTCACAGCTAGCAAATGCTTTGATTATTGAAGGAGACTATCAAAATTCAATCTCTGCCTTGGAGTCGGGATACATACTTTCAGTTGAGATATGCTATCCTGAACTGCAGGTTGGCATCTAA

mRNA sequence

ATTTTCTAAGAGTATTGGAGCTTAACAAAAGTGCTCGAGAAGAGAGATACTTCATATACTCATTTGTCCCAAAACTCTGGTTTTCACAAATTAATCCCAAAAGTCTTTAACCCCTATTTTGGGCAAATTTTTTTCTGCCTTTTCCTGGATTGTCGTGTGAGCTTGGCGCCCCCTTTCCCAGAGACTATAAATTGGCAGCAATCTGATTGACACTCCTACTGAAAAGAATCTGATGGATATGGAAGCAGTGGCGGAGGGATTGTGGAGGCTGGCAGATTACCACGAGAAGCAGGGGGAATTAGGGAAGGCAATAAAGTGTTTGGAAGCCATATGCCAGAGTCCCGTGTCTTTCTTTCCAGTCGTTGAGGTCAAGACTCGGCTTCGAATTGCCACCCTTCTACTCACTCATTCTCACAACGTCAATCATGCCAAATCCCATCTCGAGCGTTCTTCTATTCCATCATGCTTCGAATTGAAGTGCCGGGCTTATAGCTTATTAAGCCAGTGTTATCATCTCGTCGGTGCTATTCCTCCCCAGAAACAGCTTCTTTATAAGGGTCTTGATCTCACCAATTCTGCTGGTCACGAACTGTCAGTGAAGCTATGGTCTTGCAACTTCAATTCACAGCTAGCAAATGCTTTGATTATTGAAGGAGACTATCAAAATTCAATCTCTGCCTTGGAGTCGGGATACATACTTTCAGTTGAGATATGCTATCCTGAACTGCAGGTTGGCATCTAA

Coding sequence (CDS)

ATGGATATGGAAGCAGTGGCGGAGGGATTGTGGAGGCTGGCAGATTACCACGAGAAGCAGGGGGAATTAGGGAAGGCAATAAAGTGTTTGGAAGCCATATGCCAGAGTCCCGTGTCTTTCTTTCCAGTCGTTGAGGTCAAGACTCGGCTTCGAATTGCCACCCTTCTACTCACTCATTCTCACAACGTCAATCATGCCAAATCCCATCTCGAGCGTTCTTCTATTCCATCATGCTTCGAATTGAAGTGCCGGGCTTATAGCTTATTAAGCCAGTGTTATCATCTCGTCGGTGCTATTCCTCCCCAGAAACAGCTTCTTTATAAGGGTCTTGATCTCACCAATTCTGCTGGTCACGAACTGTCAGTGAAGCTATGGTCTTGCAACTTCAATTCACAGCTAGCAAATGCTTTGATTATTGAAGGAGACTATCAAAATTCAATCTCTGCCTTGGAGTCGGGATACATACTTTCAGTTGAGATATGCTATCCTGAACTGCAGGTTGGCATCTAA

Protein sequence

MDMEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERSSIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQVGI

Homology

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BLAST of Lsi07G010280 vs. Swiss-Prot
Match: SCC4_HUMAN (MAU2 chromatid cohesion factor homolog OS=Homo sapiens GN=MAU2 PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 5.7e-06
Identity = 37/132 (28.03%), Postives = 62/132 (46.97%), Query Frame = 1


Query: 27  IKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFEL 86
           + CL+A+   P      +E +T L++ ++L  H+ N   A+SHLE++      IP   ++
Sbjct: 48  VHCLQAVF--PFKPPQRIEARTHLQLGSVLYHHTKNSEQARSHLEKAWLISQQIPQFEDV 107

Query: 87  KCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEG 146
           K  A SLLS+ Y    ++   K LL K + ++    +      W C    QLA    +E 
Sbjct: 108 KFEAASLLSELYCQENSVDAAKPLLRKAIQISQQTPY------WHCRLLFQLAQLHTLEK 167

Query: 147 DYQNSISALESG 154
           D  ++   L  G
Sbjct: 168 DLVSACDLLGVG 171

[Close]

BLAST of Lsi07G010280 vs. Swiss-Prot
Match: SCC4_MOUSE (MAU2 chromatid cohesion factor homolog OS=Mus musculus GN=Mau2 PE=1 SV=3)

HSP 1 Score: 52.4 bits (124), Expect = 5.7e-06
Identity = 37/132 (28.03%), Postives = 62/132 (46.97%), Query Frame = 1


Query: 27  IKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFEL 86
           + CL+A+   P      +E +T L++ ++L  H+ N   A+SHLE++      IP   ++
Sbjct: 54  VHCLQAVF--PFKPPQRIEARTHLQLGSVLYHHTKNSEQARSHLEKAWLISQQIPQFEDV 113

Query: 87  KCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEG 146
           K  A SLLS+ Y    ++   K LL K + ++    +      W C    QLA    +E 
Sbjct: 114 KFEAASLLSELYCQENSVDAAKPLLRKAIQISQQTPY------WHCRLLFQLAQLHTLEK 173

Query: 147 DYQNSISALESG 154
           D  ++   L  G
Sbjct: 174 DLVSACDLLGVG 177

[Close]

BLAST of Lsi07G010280 vs. Swiss-Prot
Match: SCC4_XENTR (MAU2 chromatid cohesion factor homolog OS=Xenopus tropicalis GN=mau2 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.7e-06
Identity = 37/132 (28.03%), Postives = 62/132 (46.97%), Query Frame = 1


Query: 27  IKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFEL 86
           + CL+A+ Q   S    +E +T L++ ++L  H+ N   A+ HLE++      IP   ++
Sbjct: 40  VHCLQAVFQFKPS--QRIEARTHLQLGSVLYHHTKNSELARQHLEKAWLISQQIPQFEDV 99

Query: 87  KCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEG 146
           K  A SLLS+ Y    ++   K LL K + ++    +      W C    QLA    +E 
Sbjct: 100 KFEAASLLSELYCQENSVDAAKPLLRKAIQISQQTPY------WHCRLLFQLAQLHTLEK 159

Query: 147 DYQNSISALESG 154
           D  ++   L  G
Sbjct: 160 DLVSACDLLGVG 163

[Close]

BLAST of Lsi07G010280 vs. TrEMBL
Match: A0A0A0L4R7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000010 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 4.3e-85
Identity = 159/170 (93.53%), Postives = 163/170 (95.88%), Query Frame = 1


Query: 3   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHN 62
           MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPV+EVKTRLRIATLLLT+SHN
Sbjct: 1   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 60

Query: 63  VNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG 122
           VNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG
Sbjct: 61  VNHAKSHLERSQLLLKSIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG 120

Query: 123 HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV 168
           HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGY+ S EICYPELQ+
Sbjct: 121 HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYVFSAEICYPELQM 170

[Close]

BLAST of Lsi07G010280 vs. TrEMBL
Match: A0A151TX81_CAJCA (Cohesin loading complex subunit SCC4 isogeny OS=Cajanus cajan GN=KK1_010828 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 9.0e-75
Identity = 138/170 (81.18%), Postives = 155/170 (91.18%), Query Frame = 1


Query: 3   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHN 62
           MEAVAEGLW L++YHEK+GE+GKA+KCLEAICQS VSFFP+VEVKTRLR+ATLLL HSHN
Sbjct: 1   MEAVAEGLWGLSEYHEKRGEIGKAVKCLEAICQSEVSFFPIVEVKTRLRVATLLLHHSHN 60

Query: 63  VNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG 122
           VNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVGAI PQKQ+LYKGL+LT SAG
Sbjct: 61  VNHAKSHLERSQLLLKSIPSCFELKCRAYSLLSQCYHLVGAIAPQKQVLYKGLELTASAG 120

Query: 123 HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV 168
           +E+S+KLWSCNFNSQLANAL IEGDYQ SISALE GY+ + E+C+PELQ+
Sbjct: 121 YEISMKLWSCNFNSQLANALSIEGDYQGSISALECGYVCATEVCFPELQM 170

[Close]

BLAST of Lsi07G010280 vs. TrEMBL
Match: V7BAU7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G243600g PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.0e-74
Identity = 138/170 (81.18%), Postives = 154/170 (90.59%), Query Frame = 1


Query: 3   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHN 62
           MEAVAEGLW LA+YHEK+GE+GKA+KCLEAICQS VSFFP+VEVKTRLRIATLLL HSHN
Sbjct: 1   MEAVAEGLWGLAEYHEKRGEIGKAVKCLEAICQSEVSFFPIVEVKTRLRIATLLLHHSHN 60

Query: 63  VNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG 122
           VNHAKSHLERS     SIPSCFE+KCRAYSLLSQCYHLVGAIPPQKQ+L+KGL+LT S G
Sbjct: 61  VNHAKSHLERSQLLLKSIPSCFEIKCRAYSLLSQCYHLVGAIPPQKQVLHKGLELTASVG 120

Query: 123 HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV 168
           +E+S+KLWSCNFNSQLANAL IEGDYQ SISALE GY+ + E+C PELQ+
Sbjct: 121 YEISMKLWSCNFNSQLANALSIEGDYQGSISALECGYVCATEVCLPELQM 170

[Close]

BLAST of Lsi07G010280 vs. TrEMBL
Match: A0A0B2S4C3_GLYSO (MAU2 chromatid cohesion factor like OS=Glycine soja GN=glysoja_016910 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 4.5e-74
Identity = 137/170 (80.59%), Postives = 153/170 (90.00%), Query Frame = 1


Query: 3   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHN 62
           MEAVAEGLW LA+YHEK+GE+GKA+KCLEAICQS  SFFP+VEVKTRLRIATLLL HSHN
Sbjct: 1   MEAVAEGLWGLAEYHEKRGEIGKAVKCLEAICQSDASFFPIVEVKTRLRIATLLLHHSHN 60

Query: 63  VNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG 122
           VNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQ+L+KGL+L  S G
Sbjct: 61  VNHAKSHLERSQLLLKSIPSCFELKCRAYSLLSQCYHLVGAIPPQKQVLHKGLELAASVG 120

Query: 123 HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV 168
           +E+S+KLWSCNFNSQLANAL IEGDYQ SISALE GY+ + E+C+PELQ+
Sbjct: 121 YEISMKLWSCNFNSQLANALSIEGDYQGSISALECGYVCATEVCFPELQM 170

[Close]

BLAST of Lsi07G010280 vs. TrEMBL
Match: I1MBN1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G207300 PE=4 SV=2)

HSP 1 Score: 285.4 bits (729), Expect = 4.5e-74
Identity = 137/170 (80.59%), Postives = 153/170 (90.00%), Query Frame = 1


Query: 3   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHN 62
           MEAVAEGLW LA+YHEK+GE+GKA+KCLEAICQS  SFFP+VEVKTRLRIATLLL HSHN
Sbjct: 1   MEAVAEGLWGLAEYHEKRGEIGKAVKCLEAICQSDASFFPIVEVKTRLRIATLLLHHSHN 60

Query: 63  VNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG 122
           VNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQ+L+KGL+L  S G
Sbjct: 61  VNHAKSHLERSQLLLKSIPSCFELKCRAYSLLSQCYHLVGAIPPQKQVLHKGLELAASVG 120

Query: 123 HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV 168
           +E+S+KLWSCNFNSQLANAL IEGDYQ SISALE GY+ + E+C+PELQ+
Sbjct: 121 YEISMKLWSCNFNSQLANALSIEGDYQGSISALECGYVCATEVCFPELQM 170

[Close]

BLAST of Lsi07G010280 vs. TAIR10
Match: AT5G51340.1 (AT5G51340.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 224.9 bits (572), Expect = 3.6e-59
Identity = 108/172 (62.79%), Postives = 136/172 (79.07%), Query Frame = 1


Query: 1   MDMEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHS 60
           M+  AVAEGLW LAD+H+K GE+GK IKCLEAICQS +SF P+VEVK+RLR+A LLL +S
Sbjct: 1   MEGAAVAEGLWGLADHHQKLGEIGKTIKCLEAICQSQISFLPLVEVKSRLRLAALLLRYS 60

Query: 61  HNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNS 120
           HNVNHAKSHLERS     SIPS ++LK + YSLLS CYHL+ + PPQ+ LL K L+L +S
Sbjct: 61  HNVNHAKSHLERSLLLLKSIPSSYDLKFQNYSLLSHCYHLLASFPPQRNLLVKALELASS 120

Query: 121 AGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV 168
              ++S  LWSCNFNSQLAN  II+ D+ +S+SALESG++ +  IC+PELQ+
Sbjct: 121 VPQDISAYLWSCNFNSQLANTFIIQADFPSSLSALESGFLSASHICFPELQM 172

[Close]

BLAST of Lsi07G010280 vs. NCBI nr
Match: gi|449456905|ref|XP_004146189.1| (PREDICTED: MAU2 chromatid cohesion factor homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 6.2e-85
Identity = 159/170 (93.53%), Postives = 163/170 (95.88%), Query Frame = 1


Query: 3   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHN 62
           MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPV+EVKTRLRIATLLLT+SHN
Sbjct: 1   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 60

Query: 63  VNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG 122
           VNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG
Sbjct: 61  VNHAKSHLERSQLLLKSIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG 120

Query: 123 HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV 168
           HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGY+ S EICYPELQ+
Sbjct: 121 HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYVFSAEICYPELQM 170

[Close]

BLAST of Lsi07G010280 vs. NCBI nr
Match: gi|778674503|ref|XP_011650234.1| (PREDICTED: MAU2 chromatid cohesion factor homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 6.2e-85
Identity = 159/170 (93.53%), Postives = 163/170 (95.88%), Query Frame = 1


Query: 3   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHN 62
           MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPV+EVKTRLRIATLLLT+SHN
Sbjct: 1   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 60

Query: 63  VNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG 122
           VNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG
Sbjct: 61  VNHAKSHLERSQLLLKSIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG 120

Query: 123 HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV 168
           HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGY+ S EICYPELQ+
Sbjct: 121 HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYVFSAEICYPELQM 170

[Close]

BLAST of Lsi07G010280 vs. NCBI nr
Match: gi|700200444|gb|KGN55577.1| (hypothetical protein Csa_3G000010 [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 6.2e-85
Identity = 159/170 (93.53%), Postives = 163/170 (95.88%), Query Frame = 1


Query: 3   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHN 62
           MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPV+EVKTRLRIATLLLT+SHN
Sbjct: 1   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 60

Query: 63  VNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG 122
           VNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG
Sbjct: 61  VNHAKSHLERSQLLLKSIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG 120

Query: 123 HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV 168
           HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGY+ S EICYPELQ+
Sbjct: 121 HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYVFSAEICYPELQM 170

[Close]

BLAST of Lsi07G010280 vs. NCBI nr
Match: gi|659095143|ref|XP_008448423.1| (PREDICTED: LOW QUALITY PROTEIN: MAU2 chromatid cohesion factor homolog [Cucumis melo])

HSP 1 Score: 322.0 bits (824), Expect = 6.2e-85
Identity = 159/170 (93.53%), Postives = 163/170 (95.88%), Query Frame = 1


Query: 3   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHN 62
           MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPV+EVKTRLRIATLLLT+SHN
Sbjct: 1   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 60

Query: 63  VNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG 122
           VNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG
Sbjct: 61  VNHAKSHLERSQLLLKSIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG 120

Query: 123 HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV 168
           HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGY+ S EICYPELQ+
Sbjct: 121 HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYVFSAEICYPELQM 170

[Close]

BLAST of Lsi07G010280 vs. NCBI nr
Match: gi|1012360380|gb|KYP71564.1| (Cohesin loading complex subunit SCC4 isogeny [Cajanus cajan])

HSP 1 Score: 287.7 bits (735), Expect = 1.3e-74
Identity = 138/170 (81.18%), Postives = 155/170 (91.18%), Query Frame = 1


Query: 3   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHN 62
           MEAVAEGLW L++YHEK+GE+GKA+KCLEAICQS VSFFP+VEVKTRLR+ATLLL HSHN
Sbjct: 1   MEAVAEGLWGLSEYHEKRGEIGKAVKCLEAICQSEVSFFPIVEVKTRLRVATLLLHHSHN 60

Query: 63  VNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAG 122
           VNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVGAI PQKQ+LYKGL+LT SAG
Sbjct: 61  VNHAKSHLERSQLLLKSIPSCFELKCRAYSLLSQCYHLVGAIAPQKQVLYKGLELTASAG 120

Query: 123 HELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV 168
           +E+S+KLWSCNFNSQLANAL IEGDYQ SISALE GY+ + E+C+PELQ+
Sbjct: 121 YEISMKLWSCNFNSQLANALSIEGDYQGSISALECGYVCATEVCFPELQM 170

The following BLAST results are available for this feature:

BLAST of Lsi07G010280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SCC4_HUMAN	5.7e-06	28.03	MAU2 chromatid cohesion factor homolog OS=Homo sapiens GN=MAU2 PE=1 SV=2	[more]
SCC4_MOUSE	5.7e-06	28.03	MAU2 chromatid cohesion factor homolog OS=Mus musculus GN=Mau2 PE=1 SV=3	[more]
SCC4_XENTR	5.7e-06	28.03	MAU2 chromatid cohesion factor homolog OS=Xenopus tropicalis GN=mau2 PE=2 SV=1	[more]

BLAST of Lsi07G010280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4R7_CUCSA	4.3e-85	93.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000010 PE=4 SV=1	[more]
A0A151TX81_CAJCA	9.0e-75	81.18	Cohesin loading complex subunit SCC4 isogeny OS=Cajanus cajan GN=KK1_010828 PE=4...	[more]
V7BAU7_PHAVU	2.0e-74	81.18	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G243600g PE=4 SV=1	[more]
A0A0B2S4C3_GLYSO	4.5e-74	80.59	MAU2 chromatid cohesion factor like OS=Glycine soja GN=glysoja_016910 PE=4 SV=1	[more]
I1MBN1_SOYBN	4.5e-74	80.59	Uncharacterized protein OS=Glycine max GN=GLYMA_14G207300 PE=4 SV=2	[more]

BLAST of Lsi07G010280 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51340.1	3.6e-59	62.79	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Lsi07G010280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456905\|ref\|XP_004146189.1\|	6.2e-85	93.53	PREDICTED: MAU2 chromatid cohesion factor homolog isoform X1 [Cucumis sativus]	[more]
gi\|778674503\|ref\|XP_011650234.1\|	6.2e-85	93.53	PREDICTED: MAU2 chromatid cohesion factor homolog isoform X2 [Cucumis sativus]	[more]
gi\|700200444\|gb\|KGN55577.1\|	6.2e-85	93.53	hypothetical protein Csa_3G000010 [Cucumis sativus]	[more]
gi\|659095143\|ref\|XP_008448423.1\|	6.2e-85	93.53	PREDICTED: LOW QUALITY PROTEIN: MAU2 chromatid cohesion factor homolog [Cucumis ...	[more]
gi\|1012360380\|gb\|KYP71564.1\|	1.3e-74	81.18	Cohesin loading complex subunit SCC4 isogeny [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007064	mitotic sister chromatid cohesion

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR019440	MAU2
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007064	mitotic sister chromatid cohesion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G010280.1	Lsi07G010280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 3..151 score: 7.
IPR019440	Chromatid cohesion factor MAU2	PANTHER	PTHR21394	UNCHARACTERIZED	coord: 1..167 score: 1.6
IPR019440	Chromatid cohesion factor MAU2	PFAM	PF10345	Cohesin_load	coord: 26..73 score: 1.
None	No IPR available	PANTHER	PTHR21394:SF0	MAU2 CHROMATID COHESION FACTOR HOMOLOG	coord: 1..167 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G010280	Cla008969	Watermelon (97103) v1	lsiwmB429
Lsi07G010280	ClCG10G000020	Watermelon (Charleston Gray)	lsiwcgB389

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G010280	Melon (DHL92) v3.6.1	lsimedB462
Lsi07G010280	Cucumber (Chinese Long) v3	cuclsiB250
Lsi07G010280	Watermelon (97103) v2	lsiwmbB395
Lsi07G010280	Wax gourd	lsiwgoB540
Lsi07G010280	Cucumber (Gy14) v1	cgylsiB530
Lsi07G010280	Wild cucumber (PI 183967)	cpilsiB227
Lsi07G010280	Cucumber (Chinese Long) v2	culsiB228
Lsi07G010280	Melon (DHL92) v3.5.1	lsimeB446
Lsi07G010280	Cucumber (Gy14) v2	cgyblsiB217