Lsi07G011510.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTTTTTTTTCGACGTGGAGATTCATACCTTTTAACCTTTAGAGAGGTAAGAAATGTGTTTATCCTAATTCTCACGTGAGACTTATATACACAACAATGTTACTCTATTCACCACTCAACTATTGAAGGTTTCTTTTTCTACCATTGATGTACTGATAACAGTCAAGATCCAATTGCAGAGGTTACTATTAATTAATTACAATCTAAAATATAAATATAAATCTAAGATTTTCGAATATATATGATTTTCTCGAACAACCTTCCTTTCTTTTCATTGAATTTGTGGACCAAATTTGATGGAGGGCATTGAGAAATTGTACAATTCAAAGAACCAAGGATTGAGTAATTTGGATTTCGGAGTTTTCACCTCTTCTCCATTCTACACCTCTCACTCCTCATCCATAACCATCCAATCCACCATTGCCACGTGGCATCACAAATATCCAAAACTGAATGAGGTCCACCACAAAGTTCCTCTTATCACTGTTGTTATCAACTCATCAAGAACTCCATCTTCAATCAGAAAAATCCAACACTTCAACTTCTCTTAAGAAAGACATGGAAATGACAGTTTTACCAGTGTCCAATGTCAAAAACTCACACACAACCCTTCTTTCCAACCTAAATTTTACAAAGAAATCAGGGGTAATTGAAGAAACTTAGCAGTAAGTTAACACATTACAGCTTTCATCACCACCCCCAAGATTTTTCCTTACCATACTGTTCTCTGTTTTCTTGATCCATCTTTACCCTCTGCAAGGAAAAAACAGAAAGGAAAAGAGAAGGCCAAACCCATTACGTTTCAGAAAACCAATTTGGAGTAACCAAAGATCCAAATTTCAGATCATGGCAACAGTCTCTACAGCCAAGTCCCTAAACTACACAAATTCAGTCTATCCATCATCAAAAACAAGCTTGGGCCGTCACCAAGAACAGGTAATTTTCGTCACAACTGGCAAAAAATCCAAGAGAGGCAAAGCCAACACAACTCCATGGCTGATAACCTGCTCAGCAGGTGACCAACAGACAGTTGTGATTGGTCTAGCAGCAGATTCAGGGTGTGGGAAAAGCACTTTTATGAGAAGGCTAACCAGTGTATTTGGAGGTGCAGCAAAGCCTCCAAGAGGTGGAAATCCAGACTCCAACACACTCATAAGTGACACTACAACTGTGATATGTTTAGATGATTACCATTCATTGGATAGAACCGGAAGAAAAGAGAAGGGAGTTACTGCACTTGACCCAAGAGCCAATGATTTTGATCTCATGTATGAGCAAGTTAAGGCTCTCAAAGATGGAATTGCAGTTGAGAAGCCTATTTATAATCATGTCACAGGTCTTCTAGATCCACCTGAGCTTATTAAGCCTCCTAAGATCCTTGTCATTGAAGGCCTACACCCAATGTAAGTTATTTTACCTCCAACTTCTTATGTCAGAATATGAATCCAATAAAGAATATTCCTTATTAGGTCATCTCCGAGCGGTTTCTCAATCAATTAGTTATGCAATACCGATTAACTTTAGGTGTGTTATCAATATCTCCATGTTCATAAATATTTTAAGACATAAACTTCTCAAACCTTTTTTCTTCTTGGGAAAAAGGGGGAAAGGAATTGCATAGATATCTTCTTTTTTACAACATCCTCGCCCTTCCTCCTACTTTGCTTTTTAAAATATTAGTGGAAAGCGAATAACCAAACAAATGAACATGTAGGTAGAAATGGTGTTTAAAACTTGATTTTTAAAAATTAAAAAAAAAAATAAAACAAAATGGTTACCAAAAAGAATAAAACTCTTTGATTATGAAAATACTAATTAATTTTATCTGGAATAAAACAATAAAAATAGCTCTAAATTTCTTCTGTATATTGACTAAAACCGTAACTATTTTCTGTACCACAAGCAAGCTGAAGGAGATTCTGAAAGGGTTAATAACCACTATTGAAGTGTCAAGTGAACTAATATTCACATTTCTTCCCCATTTTTCTTCCTTTTAGTATCCGCGCTAAATCCTTTAATTTTTTTTATATTCGTAAGTGTTCGGACTAGCTTACACGCACCTCAACTAATTTTATGGGACAACCTGCCTGACCCTACAACATTTGGGTGTCAAAAAAAACCCTAGGATATTAAATCCTACGTAGGTGACCACCATAGATTGAATCCATTACCCTTTAGTCCTTTGGTCCTTTTTTTTATGTTCCCACTATCACTAGTTCAACTCATATCACTAGTTCAACTCATGATGGTTCTAAATCCTTTAATTTAAGAAAATGTTAG TTTTTTTTTCGACGTGGAGATTCATACCTTTTAACCTTTAGAGAGGTAAGAAATGTGTTTATCCTAATTCTCACGTGAGACTTATATACACAACAATGTTACTCTATTCACCACTCAACTATTGAAGGTTTCTTTTTCTACCATTGATGTACTGATAACAGTCAAGATCCAATTGCAGAGGTTACTATTAATTAATTACAATCTAAAATATAAATATAAATCTAAGATTTTCGAATATATATGATTTTCTCGAACAACCTTCCTTTCTTTTCATTGAATTTGTGGACCAAATTTGATGGAGGGCATTGAGAAATTGTACAATTCAAAGAACCAAGGATTGAGTAATTTGGATTTCGGAGTTTTCACCTCTTCTCCATTCTACACCTCTCACTCCTCATCCATAACCATCCAATCCACCATTGCCACGTGGCATCACAAATATCCAAAACTGAATGAGGTCCACCACAAAGTTCCTCTTATCACTGTTGTTATCAACTCATCAAGAACTCCATCTTCAATCAGAAAAATCCAACACTTCAACTTCTCTTAAGAAAGACATGGAAATGACAGTTTTACCAGTGTCCAATGTCAAAAACTCACACACAACCCTTCTTTCCAACCTAAATTTTACAAAGAAATCAGGGGTAATTGAAGAAACTTAGCAGTAAGTTAACACATTACAGCTTTCATCACCACCCCCAAGATTTTTCCTTACCATACTGTTCTCTGTTTTCTTGATCCATCTTTACCCTCTGCAAGGAAAAAACAGAAAGGAAAAGAGAAGGCCAAACCCATTACGTTTCAGAAAACCAATTTGGAGTAACCAAAGATCCAAATTTCAGATCATGGCAACAGTCTCTACAGCCAAGTCCCTAAACTACACAAATTCAGTCTATCCATCATCAAAAACAAGCTTGGGCCGTCACCAAGAACAGGTAATTTTCGTCACAACTGGCAAAAAATCCAAGAGAGGCAAAGCCAACACAACTCCATGGCTGATAACCTGCTCAGCAGGTGACCAACAGACAGTTGTGATTGGTCTAGCAGCAGATTCAGGGTGTGGGAAAAGCACTTTTATGAGAAGGCTAACCAGTGTATTTGGAGGTGCAGCAAAGCCTCCAAGAGGTGGAAATCCAGACTCCAACACACTCATAAGTGACACTACAACTGTGATATGTTTAGATGATTACCATTCATTGGATAGAACCGGAAGAAAAGAGAAGGGAGTTACTGCACTTGACCCAAGAGCCAATGATTTTGATCTCATGTATGAGCAAGTTAAGGCTCTCAAAGATGGAATTGCAGTTGAGAAGCCTATTTATAATCATGTCACAGGTCTTCTAGATCCACCTGAGCTTATTAAGCCTCCTAAGATCCTTGTCATTGAAGGCCTACACCCAATTTCAACTCATATCACTAGTTCAACTCATGATGGTTCTAAATCCTTTAATTTAAGAAAATGTTAG ATGGCAACAGTCTCTACAGCCAAGTCCCTAAACTACACAAATTCAGTCTATCCATCATCAAAAACAAGCTTGGGCCGTCACCAAGAACAGGTAATTTTCGTCACAACTGGCAAAAAATCCAAGAGAGGCAAAGCCAACACAACTCCATGGCTGATAACCTGCTCAGCAGGTGACCAACAGACAGTTGTGATTGGTCTAGCAGCAGATTCAGGGTGTGGGAAAAGCACTTTTATGAGAAGGCTAACCAGTGTATTTGGAGGTGCAGCAAAGCCTCCAAGAGGTGGAAATCCAGACTCCAACACACTCATAAGTGACACTACAACTGTGATATGTTTAGATGATTACCATTCATTGGATAGAACCGGAAGAAAAGAGAAGGGAGTTACTGCACTTGACCCAAGAGCCAATGATTTTGATCTCATGTATGAGCAAGTTAAGGCTCTCAAAGATGGAATTGCAGTTGAGAAGCCTATTTATAATCATGTCACAGGTCTTCTAGATCCACCTGAGCTTATTAAGCCTCCTAAGATCCTTGTCATTGAAGGCCTACACCCAATTTCAACTCATATCACTAGTTCAACTCATGATGGTTCTAAATCCTTTAATTTAAGAAAATGTTAG MATVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQQTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPISTHITSSTHDGSKSFNLRKC
BLAST of Lsi07G011510.1 vs. Swiss-Prot
Match: KPPR_MESCR (Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1) HSP 1 Score: 272.7 bits (696), Expect = 3.3e-72 Identity = 138/173 (79.77%), Postives = 149/173 (86.13%), Query Frame = 1
BLAST of Lsi07G011510.1 vs. Swiss-Prot
Match: KPPR_ARATH (Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=2 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 2.7e-66 Identity = 132/186 (70.97%), Postives = 154/186 (82.80%), Query Frame = 1
BLAST of Lsi07G011510.1 vs. Swiss-Prot
Match: KPPR_WHEAT (Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1) HSP 1 Score: 252.3 bits (643), Expect = 4.6e-66 Identity = 130/181 (71.82%), Postives = 144/181 (79.56%), Query Frame = 1
BLAST of Lsi07G011510.1 vs. Swiss-Prot
Match: KPPR_SPIOL (Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 246.1 bits (627), Expect = 3.3e-64 Identity = 124/167 (74.25%), Postives = 141/167 (84.43%), Query Frame = 1
BLAST of Lsi07G011510.1 vs. Swiss-Prot
Match: KPPR_CHLRE (Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1) HSP 1 Score: 211.5 bits (537), Expect = 9.0e-54 Identity = 104/144 (72.22%), Postives = 115/144 (79.86%), Query Frame = 1
BLAST of Lsi07G011510.1 vs. TrEMBL
Match: A0A0A0L1R3_CUCSA (Phosphoribulokinase OS=Cucumis sativus GN=Csa_3G006690 PE=3 SV=1) HSP 1 Score: 343.2 bits (879), Expect = 2.2e-91 Identity = 171/187 (91.44%), Postives = 177/187 (94.65%), Query Frame = 1
BLAST of Lsi07G011510.1 vs. TrEMBL
Match: V7CLS9_PHAVU (Phosphoribulokinase OS=Phaseolus vulgaris GN=PHAVU_002G133100g PE=3 SV=1) HSP 1 Score: 297.7 bits (761), Expect = 1.1e-77 Identity = 148/185 (80.00%), Postives = 165/185 (89.19%), Query Frame = 1
BLAST of Lsi07G011510.1 vs. TrEMBL
Match: A0A061G7Z6_THECC (Phosphoribulokinase OS=Theobroma cacao GN=TCM_016637 PE=3 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 1.4e-77 Identity = 151/188 (80.32%), Postives = 168/188 (89.36%), Query Frame = 1
BLAST of Lsi07G011510.1 vs. TrEMBL
Match: A0A0S3T4A7_PHAAN (Phosphoribulokinase OS=Vigna angularis var. angularis GN=Vigan.10G120200 PE=3 SV=1) HSP 1 Score: 295.8 bits (756), Expect = 4.0e-77 Identity = 148/185 (80.00%), Postives = 165/185 (89.19%), Query Frame = 1
BLAST of Lsi07G011510.1 vs. TrEMBL
Match: A0A0L9TID4_PHAAN (Phosphoribulokinase OS=Phaseolus angularis GN=LR48_Vigan983s000500 PE=3 SV=1) HSP 1 Score: 295.8 bits (756), Expect = 4.0e-77 Identity = 148/185 (80.00%), Postives = 165/185 (89.19%), Query Frame = 1
BLAST of Lsi07G011510.1 vs. TAIR10
Match: AT1G32060.1 (AT1G32060.1 phosphoribulokinase) HSP 1 Score: 253.1 bits (645), Expect = 1.5e-67 Identity = 132/186 (70.97%), Postives = 154/186 (82.80%), Query Frame = 1
BLAST of Lsi07G011510.1 vs. TAIR10
Match: AT1G26190.1 (AT1G26190.1 Phosphoribulokinase / Uridine kinase family) HSP 1 Score: 48.9 bits (115), Expect = 4.3e-06 Identity = 36/134 (26.87%), Postives = 62/134 (46.27%), Query Frame = 1
BLAST of Lsi07G011510.1 vs. NCBI nr
Match: gi|659095509|ref|XP_008448619.1| (PREDICTED: phosphoribulokinase, chloroplastic-like [Cucumis melo]) HSP 1 Score: 345.5 bits (885), Expect = 6.4e-92 Identity = 172/187 (91.98%), Postives = 179/187 (95.72%), Query Frame = 1
BLAST of Lsi07G011510.1 vs. NCBI nr
Match: gi|449456747|ref|XP_004146110.1| (PREDICTED: phosphoribulokinase, chloroplastic [Cucumis sativus]) HSP 1 Score: 343.2 bits (879), Expect = 3.2e-91 Identity = 171/187 (91.44%), Postives = 177/187 (94.65%), Query Frame = 1
BLAST of Lsi07G011510.1 vs. NCBI nr
Match: gi|593790334|ref|XP_007158206.1| (hypothetical protein PHAVU_002G133100g [Phaseolus vulgaris]) HSP 1 Score: 297.7 bits (761), Expect = 1.5e-77 Identity = 148/185 (80.00%), Postives = 165/185 (89.19%), Query Frame = 1
BLAST of Lsi07G011510.1 vs. NCBI nr
Match: gi|590680109|ref|XP_007040771.1| (Phosphoribulokinase [Theobroma cacao]) HSP 1 Score: 297.4 bits (760), Expect = 2.0e-77 Identity = 151/188 (80.32%), Postives = 168/188 (89.36%), Query Frame = 1
BLAST of Lsi07G011510.1 vs. NCBI nr
Match: gi|965614063|dbj|BAT99695.1| (hypothetical protein VIGAN_10120200 [Vigna angularis var. angularis]) HSP 1 Score: 295.8 bits (756), Expect = 5.8e-77 Identity = 148/185 (80.00%), Postives = 165/185 (89.19%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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