Lsi07G011510 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G011510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Phosphoribulokinase / Uridine kinase family
Location	chr07 : 16981033 .. 16983311 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTTTCGACGTGGAGATTCATACCTTTTAACCTTTAGAGAGGTAAGAAATGTGTTTATCCTAATTCTCACGTGAGACTTATATACACAACAATGTTACTCTATTCACCACTCAACTATTGAAGGTTTCTTTTTCTACCATTGATGTACTGATAACAGTCAAGATCCAATTGCAGAGGTTACTATTAATTAATTACAATCTAAAATATAAATATAAATCTAAGATTTTCGAATATATATGATTTTCTCGAACAACCTTCCTTTCTTTTCATTGAATTTGTGGACCAAATTTGATGGAGGGCATTGAGAAATTGTACAATTCAAAGAACCAAGGATTGAGTAATTTGGATTTCGGAGTTTTCACCTCTTCTCCATTCTACACCTCTCACTCCTCATCCATAACCATCCAATCCACCATTGCCACGTGGCATCACAAATATCCAAAACTGAATGAGGTCCACCACAAAGTTCCTCTTATCACTGTTGTTATCAACTCATCAAGAACTCCATCTTCAATCAGAAAAATCCAACACTTCAACTTCTCTTAAGAAAGACATGGAAATGACAGTTTTACCAGTGTCCAATGTCAAAAACTCACACACAACCCTTCTTTCCAACCTAAATTTTACAAAGAAATCAGGGGTAATTGAAGAAACTTAGCAGTAAGTTAACACATTACAGCTTTCATCACCACCCCCAAGATTTTTCCTTACCATACTGTTCTCTGTTTTCTTGATCCATCTTTACCCTCTGCAAGGAAAAAACAGAAAGGAAAAGAGAAGGCCAAACCCATTACGTTTCAGAAAACCAATTTGGAGTAACCAAAGATCCAAATTTCAGATCATGGCAACAGTCTCTACAGCCAAGTCCCTAAACTACACAAATTCAGTCTATCCATCATCAAAAACAAGCTTGGGCCGTCACCAAGAACAGGTAATTTTCGTCACAACTGGCAAAAAATCCAAGAGAGGCAAAGCCAACACAACTCCATGGCTGATAACCTGCTCAGCAGGTGACCAACAGACAGTTGTGATTGGTCTAGCAGCAGATTCAGGGTGTGGGAAAAGCACTTTTATGAGAAGGCTAACCAGTGTATTTGGAGGTGCAGCAAAGCCTCCAAGAGGTGGAAATCCAGACTCCAACACACTCATAAGTGACACTACAACTGTGATATGTTTAGATGATTACCATTCATTGGATAGAACCGGAAGAAAAGAGAAGGGAGTTACTGCACTTGACCCAAGAGCCAATGATTTTGATCTCATGTATGAGCAAGTTAAGGCTCTCAAAGATGGAATTGCAGTTGAGAAGCCTATTTATAATCATGTCACAGGTCTTCTAGATCCACCTGAGCTTATTAAGCCTCCTAAGATCCTTGTCATTGAAGGCCTACACCCAATGTAAGTTATTTTACCTCCAACTTCTTATGTCAGAATATGAATCCAATAAAGAATATTCCTTATTAGGTCATCTCCGAGCGGTTTCTCAATCAATTAGTTATGCAATACCGATTAACTTTAGGTGTGTTATCAATATCTCCATGTTCATAAATATTTTAAGACATAAACTTCTCAAACCTTTTTTCTTCTTGGGAAAAAGGGGGAAAGGAATTGCATAGATATCTTCTTTTTTACAACATCCTCGCCCTTCCTCCTACTTTGCTTTTTAAAATATTAGTGGAAAGCGAATAACCAAACAAATGAACATGTAGGTAGAAATGGTGTTTAAAACTTGATTTTTAAAAATTAAAAAAAAAAATAAAACAAAATGGTTACCAAAAAGAATAAAACTCTTTGATTATGAAAATACTAATTAATTTTATCTGGAATAAAACAATAAAAATAGCTCTAAATTTCTTCTGTATATTGACTAAAACCGTAACTATTTTCTGTACCACAAGCAAGCTGAAGGAGATTCTGAAAGGGTTAATAACCACTATTGAAGTGTCAAGTGAACTAATATTCACATTTCTTCCCCATTTTTCTTCCTTTTAGTATCCGCGCTAAATCCTTTAATTTTTTTTATATTCGTAAGTGTTCGGACTAGCTTACACGCACCTCAACTAATTTTATGGGACAACCTGCCTGACCCTACAACATTTGGGTGTCAAAAAAAACCCTAGGATATTAAATCCTACGTAGGTGACCACCATAGATTGAATCCATTACCCTTTAGTCCTTTGGTCCTTTTTTTTATGTTCCCACTATCACTAGTTCAACTCATATCACTAGTTCAACTCATGATGGTTCTAAATCCTTTAATTTAAGAAAATGTTAG

mRNA sequence

TTTTTTTTTCGACGTGGAGATTCATACCTTTTAACCTTTAGAGAGGTAAGAAATGTGTTTATCCTAATTCTCACGTGAGACTTATATACACAACAATGTTACTCTATTCACCACTCAACTATTGAAGGTTTCTTTTTCTACCATTGATGTACTGATAACAGTCAAGATCCAATTGCAGAGGTTACTATTAATTAATTACAATCTAAAATATAAATATAAATCTAAGATTTTCGAATATATATGATTTTCTCGAACAACCTTCCTTTCTTTTCATTGAATTTGTGGACCAAATTTGATGGAGGGCATTGAGAAATTGTACAATTCAAAGAACCAAGGATTGAGTAATTTGGATTTCGGAGTTTTCACCTCTTCTCCATTCTACACCTCTCACTCCTCATCCATAACCATCCAATCCACCATTGCCACGTGGCATCACAAATATCCAAAACTGAATGAGGTCCACCACAAAGTTCCTCTTATCACTGTTGTTATCAACTCATCAAGAACTCCATCTTCAATCAGAAAAATCCAACACTTCAACTTCTCTTAAGAAAGACATGGAAATGACAGTTTTACCAGTGTCCAATGTCAAAAACTCACACACAACCCTTCTTTCCAACCTAAATTTTACAAAGAAATCAGGGGTAATTGAAGAAACTTAGCAGTAAGTTAACACATTACAGCTTTCATCACCACCCCCAAGATTTTTCCTTACCATACTGTTCTCTGTTTTCTTGATCCATCTTTACCCTCTGCAAGGAAAAAACAGAAAGGAAAAGAGAAGGCCAAACCCATTACGTTTCAGAAAACCAATTTGGAGTAACCAAAGATCCAAATTTCAGATCATGGCAACAGTCTCTACAGCCAAGTCCCTAAACTACACAAATTCAGTCTATCCATCATCAAAAACAAGCTTGGGCCGTCACCAAGAACAGGTAATTTTCGTCACAACTGGCAAAAAATCCAAGAGAGGCAAAGCCAACACAACTCCATGGCTGATAACCTGCTCAGCAGGTGACCAACAGACAGTTGTGATTGGTCTAGCAGCAGATTCAGGGTGTGGGAAAAGCACTTTTATGAGAAGGCTAACCAGTGTATTTGGAGGTGCAGCAAAGCCTCCAAGAGGTGGAAATCCAGACTCCAACACACTCATAAGTGACACTACAACTGTGATATGTTTAGATGATTACCATTCATTGGATAGAACCGGAAGAAAAGAGAAGGGAGTTACTGCACTTGACCCAAGAGCCAATGATTTTGATCTCATGTATGAGCAAGTTAAGGCTCTCAAAGATGGAATTGCAGTTGAGAAGCCTATTTATAATCATGTCACAGGTCTTCTAGATCCACCTGAGCTTATTAAGCCTCCTAAGATCCTTGTCATTGAAGGCCTACACCCAATTTCAACTCATATCACTAGTTCAACTCATGATGGTTCTAAATCCTTTAATTTAAGAAAATGTTAG

Coding sequence (CDS)

ATGGCAACAGTCTCTACAGCCAAGTCCCTAAACTACACAAATTCAGTCTATCCATCATCAAAAACAAGCTTGGGCCGTCACCAAGAACAGGTAATTTTCGTCACAACTGGCAAAAAATCCAAGAGAGGCAAAGCCAACACAACTCCATGGCTGATAACCTGCTCAGCAGGTGACCAACAGACAGTTGTGATTGGTCTAGCAGCAGATTCAGGGTGTGGGAAAAGCACTTTTATGAGAAGGCTAACCAGTGTATTTGGAGGTGCAGCAAAGCCTCCAAGAGGTGGAAATCCAGACTCCAACACACTCATAAGTGACACTACAACTGTGATATGTTTAGATGATTACCATTCATTGGATAGAACCGGAAGAAAAGAGAAGGGAGTTACTGCACTTGACCCAAGAGCCAATGATTTTGATCTCATGTATGAGCAAGTTAAGGCTCTCAAAGATGGAATTGCAGTTGAGAAGCCTATTTATAATCATGTCACAGGTCTTCTAGATCCACCTGAGCTTATTAAGCCTCCTAAGATCCTTGTCATTGAAGGCCTACACCCAATTTCAACTCATATCACTAGTTCAACTCATGATGGTTCTAAATCCTTTAATTTAAGAAAATGTTAG

Protein sequence

MATVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQQTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPISTHITSSTHDGSKSFNLRKC

Homology

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BLAST of Lsi07G011510 vs. Swiss-Prot
Match: KPPR_MESCR (Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 3.3e-72
Identity = 138/173 (79.77%), Postives = 149/173 (86.13%), Query Frame = 1


Query: 15  SVYPSSKTS-LGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQQTVVIGLAADSGCG 74
           S Y    TS LG +Q++ +F       KR   ++ P +ITC AGD QT+VIGLAADSGCG
Sbjct: 4   SAYTVPTTSHLGFNQKKQLFFCNKSAYKRVSFSSRPCVITCLAGDSQTIVIGLAADSGCG 63

Query: 75  KSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDP 134
           KSTFMRRLTSVFGGAA+PPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDP
Sbjct: 64  KSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDP 123

Query: 135 RANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPI 187
           RANDFDLMYEQVKALK+G AVEKPIYNHVTGLLD PELIKPPKILVIEGLHP+
Sbjct: 124 RANDFDLMYEQVKALKEGKAVEKPIYNHVTGLLDAPELIKPPKILVIEGLHPM 176

[Close]

BLAST of Lsi07G011510 vs. Swiss-Prot
Match: KPPR_ARATH (Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.7e-66
Identity = 132/186 (70.97%), Postives = 154/186 (82.80%), Query Frame = 1


Query: 1   MATVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQQ 60
           ++T+ + ++LN T+ +  SS +       + +F+   +     + NT   LITC+   Q+
Sbjct: 3   VSTIYSTQALNSTHFLTSSSSS-------KQVFLYRRQPQTNRRFNT---LITCA---QE 62

Query: 61  TVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDR 120
           T+VIGLAADSGCGKSTFMRRLTSVFGGAAKPP+GGNPDSNTLISDTTTVICLDDYHSLDR
Sbjct: 63  TIVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDR 122

Query: 121 TGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVI 180
            GRKE+ VTALDPRANDFDLMYEQVKALK+GIAVEKPIYNHVTGLLDPPELI+PPKILVI
Sbjct: 123 YGRKEQKVTALDPRANDFDLMYEQVKALKNGIAVEKPIYNHVTGLLDPPELIQPPKILVI 175

Query: 181 EGLHPI 187
           EGLHP+
Sbjct: 183 EGLHPM 175

[Close]

BLAST of Lsi07G011510 vs. Swiss-Prot
Match: KPPR_WHEAT (Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.6e-66
Identity = 130/181 (71.82%), Postives = 144/181 (79.56%), Query Frame = 1


Query: 6   TAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQQTVVIG 65
           T  SL    +  P+S    G  Q QVIF TT + S+R            S   +Q +VIG
Sbjct: 8   TTTSLRSPCTTIPNS----GFRQNQVIFFTT-RSSRRSNTRHGARTFQVSCAVEQPIVIG 67

Query: 66  LAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKE 125
           LAADSGCGKSTFMRRLTSVFGGAA+PP+GGNPDSNTLISDTTTVICLDDYHSLDRTGRKE
Sbjct: 68  LAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKE 127

Query: 126 KGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHP 185
           KGVTALDP+ANDFDLMYEQVKA+K+G A+EKPIYNHVTGLLDP ELI+PPKI VIEGLHP
Sbjct: 128 KGVTALDPKANDFDLMYEQVKAIKEGKAIEKPIYNHVTGLLDPAELIQPPKIFVIEGLHP 183

Query: 186 I 187
           +
Sbjct: 188 M 183

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BLAST of Lsi07G011510 vs. Swiss-Prot
Match: KPPR_SPIOL (Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.3e-64
Identity = 124/167 (74.25%), Postives = 141/167 (84.43%), Query Frame = 1


Query: 22  TSLGRHQEQVIFVTTGKKSKRGKANTT--PWLITCSAGDQQTVVIGLAADSGCGKSTFMR 81
           +S  ++ +QV F      S      TT   ++ITCS   QQT+VIGLAADSGCGKSTFMR
Sbjct: 17  SSFNQNNKQVFFNYKRSSSSNNTLFTTRPSYVITCS--QQQTIVIGLAADSGCGKSTFMR 76

Query: 82  RLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFD 141
           RLTSVFGGAA+PP+GGNPDSNTLISDTTTVICLDD+HSLDR GRK + VTALDP+ANDFD
Sbjct: 77  RLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDFHSLDRNGRKVEKVTALDPKANDFD 136

Query: 142 LMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPI 187
           LMYEQVKALK+G AV+KPIYNHV+GLLDPPELI+PPKILVIEGLHP+
Sbjct: 137 LMYEQVKALKEGKAVDKPIYNHVSGLLDPPELIQPPKILVIEGLHPM 181

[Close]

BLAST of Lsi07G011510 vs. Swiss-Prot
Match: KPPR_CHLRE (Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 9.0e-54
Identity = 104/144 (72.22%), Postives = 115/144 (79.86%), Query Frame = 1


Query: 42  RGKANTTPWLITCSAGDQQTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNT 101
           R  AN     +   A   +TVVIGLAADSGCGKSTFMRR+TS+FGG  KPP GGNPDSNT
Sbjct: 17  RVTANRARRSLVVRADKDKTVVIGLAADSGCGKSTFMRRMTSIFGGVPKPPAGGNPDSNT 76

Query: 102 LISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNH 161
           LISD TTVICLDDYH LDR GRK KGVTAL P A +FDLMY QVKALK+G +V+KPIYNH
Sbjct: 77  LISDMTTVICLDDYHCLDRNGRKVKGVTALAPEAQNFDLMYNQVKALKEGKSVDKPIYNH 136

Query: 162 VTGLLDPPELIKPPKILVIEGLHP 186
           V+GL+D PE I+ P ILVIEGLHP
Sbjct: 137 VSGLIDAPEKIESPPILVIEGLHP 160

[Close]

BLAST of Lsi07G011510 vs. TrEMBL
Match: A0A0A0L1R3_CUCSA (Phosphoribulokinase OS=Cucumis sativus GN=Csa_3G006690 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.2e-91
Identity = 171/187 (91.44%), Postives = 177/187 (94.65%), Query Frame = 1


Query: 1   MATVSTAKSLNYTN-SVYPSSKTSLGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQ 60
           MATVSTAKSL YT+ SVY SSKTSLG HQE ++F  +GKKSK GKANT PWLITCSAGDQ
Sbjct: 1   MATVSTAKSLIYTHYSVYSSSKTSLGHHQEHIVFFASGKKSKSGKANTNPWLITCSAGDQ 60

Query: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120
           QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD
Sbjct: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120

Query: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180
           RTGRK+KGVTALDPRANDFDLMYEQVKALK GIAVEKPIYNHVTGLLDPPELIKPPKILV
Sbjct: 121 RTGRKQKGVTALDPRANDFDLMYEQVKALKSGIAVEKPIYNHVTGLLDPPELIKPPKILV 180

Query: 181 IEGLHPI 187
           IEGLHP+
Sbjct: 181 IEGLHPM 187

[Close]

BLAST of Lsi07G011510 vs. TrEMBL
Match: V7CLS9_PHAVU (Phosphoribulokinase OS=Phaseolus vulgaris GN=PHAVU_002G133100g PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.1e-77
Identity = 148/185 (80.00%), Postives = 165/185 (89.19%), Query Frame = 1


Query: 3   TVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKK-SKRGKANTTPWLITCSAGDQQT 62
           TV + +SL+   S+   SKT    HQ+QV+F TTG++ SKRG  +   ++ITC+A DQQT
Sbjct: 5   TVYSTQSLSTNCSISTPSKTQFSFHQKQVVFYTTGRRNSKRGSNSGRSYVITCAASDQQT 64

Query: 63  VVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDRT 122
           VVIGLAADSGCGKSTFMRRLTSVFGGAA+PP+GGNPDSNTLISDTTTVICLDDYHSLDRT
Sbjct: 65  VVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRT 124

Query: 123 GRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIE 182
           GRKEKGVTALDPRANDFDLMYEQVKA+KDGI+VEKPIYNHVTGLLDPPELIKPPKILVIE
Sbjct: 125 GRKEKGVTALDPRANDFDLMYEQVKAIKDGISVEKPIYNHVTGLLDPPELIKPPKILVIE 184

Query: 183 GLHPI 187
           GLHP+
Sbjct: 185 GLHPM 189

[Close]

BLAST of Lsi07G011510 vs. TrEMBL
Match: A0A061G7Z6_THECC (Phosphoribulokinase OS=Theobroma cacao GN=TCM_016637 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.4e-77
Identity = 151/188 (80.32%), Postives = 168/188 (89.36%), Query Frame = 1


Query: 1   MATVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKK-SKRGKANTT-PWLITCSAGD 60
           + TV T +SLN T S+   +KT LG HQ+QV+F +TGK+ SKRG +++  P +ITCSA D
Sbjct: 3   VCTVYTTQSLNSTCSISTPTKTHLGFHQKQVVFYSTGKRTSKRGSSSSGGPCVITCSAVD 62

Query: 61  QQTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSL 120
            QTVVIGLAADSGCGKSTFMRRLTSVFGGAA+PPRGGNPDSNTLISD TTVICLDDYHSL
Sbjct: 63  SQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDMTTVICLDDYHSL 122

Query: 121 DRTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKIL 180
           DRTGRKEKGVTALDPRAN+FDLMYEQVKALK G+AV+KPIYNHVTGLLDPPELIKPPKIL
Sbjct: 123 DRTGRKEKGVTALDPRANNFDLMYEQVKALKSGVAVDKPIYNHVTGLLDPPELIKPPKIL 182

Query: 181 VIEGLHPI 187
           VIEGLHP+
Sbjct: 183 VIEGLHPM 190

[Close]

BLAST of Lsi07G011510 vs. TrEMBL
Match: A0A0S3T4A7_PHAAN (Phosphoribulokinase OS=Vigna angularis var. angularis GN=Vigan.10G120200 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 4.0e-77
Identity = 148/185 (80.00%), Postives = 165/185 (89.19%), Query Frame = 1


Query: 3   TVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKK-SKRGKANTTPWLITCSAGDQQT 62
           TV + +SL+   S+   SKT L  HQ+QV+F TT ++ SKRG  +   ++ITC+A DQQT
Sbjct: 5   TVYSTQSLSTNCSISTPSKTQLSFHQKQVVFYTTSRRNSKRGINSGRSYVITCAASDQQT 64

Query: 63  VVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDRT 122
           VVIGLAADSGCGKSTFMRRLTSVFGGAA+PP+GGNPDSNTLISDTTTVICLDDYHSLDRT
Sbjct: 65  VVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRT 124

Query: 123 GRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIE 182
           GRKEKGVTALDPRANDFDLMYEQVKA+KDGIAV+KPIYNHVTGLLDPPELIKPPKILVIE
Sbjct: 125 GRKEKGVTALDPRANDFDLMYEQVKAIKDGIAVQKPIYNHVTGLLDPPELIKPPKILVIE 184

Query: 183 GLHPI 187
           GLHP+
Sbjct: 185 GLHPM 189

[Close]

BLAST of Lsi07G011510 vs. TrEMBL
Match: A0A0L9TID4_PHAAN (Phosphoribulokinase OS=Phaseolus angularis GN=LR48_Vigan983s000500 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 4.0e-77
Identity = 148/185 (80.00%), Postives = 165/185 (89.19%), Query Frame = 1


Query: 3   TVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKK-SKRGKANTTPWLITCSAGDQQT 62
           TV + +SL+   S+   SKT L  HQ+QV+F TT ++ SKRG  +   ++ITC+A DQQT
Sbjct: 5   TVYSTQSLSTNCSISTPSKTQLSFHQKQVVFYTTSRRNSKRGINSGRSYVITCAASDQQT 64

Query: 63  VVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDRT 122
           VVIGLAADSGCGKSTFMRRLTSVFGGAA+PP+GGNPDSNTLISDTTTVICLDDYHSLDRT
Sbjct: 65  VVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRT 124

Query: 123 GRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIE 182
           GRKEKGVTALDPRANDFDLMYEQVKA+KDGIAV+KPIYNHVTGLLDPPELIKPPKILVIE
Sbjct: 125 GRKEKGVTALDPRANDFDLMYEQVKAIKDGIAVQKPIYNHVTGLLDPPELIKPPKILVIE 184

Query: 183 GLHPI 187
           GLHP+
Sbjct: 185 GLHPM 189

[Close]

BLAST of Lsi07G011510 vs. TAIR10
Match: AT1G32060.1 (AT1G32060.1 phosphoribulokinase)

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-67
Identity = 132/186 (70.97%), Postives = 154/186 (82.80%), Query Frame = 1


Query: 1   MATVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQQ 60
           ++T+ + ++LN T+ +  SS +       + +F+   +     + NT   LITC+   Q+
Sbjct: 3   VSTIYSTQALNSTHFLTSSSSS-------KQVFLYRRQPQTNRRFNT---LITCA---QE 62

Query: 61  TVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDR 120
           T+VIGLAADSGCGKSTFMRRLTSVFGGAAKPP+GGNPDSNTLISDTTTVICLDDYHSLDR
Sbjct: 63  TIVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDR 122

Query: 121 TGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVI 180
            GRKE+ VTALDPRANDFDLMYEQVKALK+GIAVEKPIYNHVTGLLDPPELI+PPKILVI
Sbjct: 123 YGRKEQKVTALDPRANDFDLMYEQVKALKNGIAVEKPIYNHVTGLLDPPELIQPPKILVI 175

Query: 181 EGLHPI 187
           EGLHP+
Sbjct: 183 EGLHPM 175

[Close]

BLAST of Lsi07G011510 vs. TAIR10
Match: AT1G26190.1 (AT1G26190.1 Phosphoribulokinase / Uridine kinase family)

HSP 1 Score: 48.9 bits (115), Expect = 4.3e-06
Identity = 36/134 (26.87%), Postives = 62/134 (46.27%), Query Frame = 1


Query: 62  VVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDRT 121
           +++G+A  SG GK+ F  ++ +     A                   VI +D+Y+   R 
Sbjct: 66  ILVGVAGPSGAGKTVFTEKILNFLPSVA-------------------VISMDNYNDSSRI 125

Query: 122 --GRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTG------LLDPPELIK 181
             G  +      DPR  D+D + + ++ LK+G  VE PIY+  +        LD P    
Sbjct: 126 VDGNFD------DPRLTDYDTLLKNLEDLKEGKQVEVPIYDFKSSSRVGYRTLDVP---- 170

Query: 182 PPKILVIEGLHPIS 188
           P +I++IEG++ +S
Sbjct: 186 PSRIVIIEGIYALS 170

[Close]

BLAST of Lsi07G011510 vs. NCBI nr
Match: gi|659095509|ref|XP_008448619.1| (PREDICTED: phosphoribulokinase, chloroplastic-like [Cucumis melo])

HSP 1 Score: 345.5 bits (885), Expect = 6.4e-92
Identity = 172/187 (91.98%), Postives = 179/187 (95.72%), Query Frame = 1


Query: 1   MATVSTAKSLNYTN-SVYPSSKTSLGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQ 60
           MATVSTAKSL YT+ SVY SSKTSLG HQEQ++F  +GKKSK GKANT PWLITCSAGDQ
Sbjct: 1   MATVSTAKSLIYTHYSVYSSSKTSLGHHQEQIVFFASGKKSKSGKANTNPWLITCSAGDQ 60

Query: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120
           QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD
Sbjct: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120

Query: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180
           RTGRK+KGVTALDPRANDFDLMYEQVKALK+GIAVEKPIYNHVTGLLDPPELIKPPKILV
Sbjct: 121 RTGRKQKGVTALDPRANDFDLMYEQVKALKNGIAVEKPIYNHVTGLLDPPELIKPPKILV 180

Query: 181 IEGLHPI 187
           IEGLHP+
Sbjct: 181 IEGLHPM 187

[Close]

BLAST of Lsi07G011510 vs. NCBI nr
Match: gi|449456747|ref|XP_004146110.1| (PREDICTED: phosphoribulokinase, chloroplastic [Cucumis sativus])

HSP 1 Score: 343.2 bits (879), Expect = 3.2e-91
Identity = 171/187 (91.44%), Postives = 177/187 (94.65%), Query Frame = 1


Query: 1   MATVSTAKSLNYTN-SVYPSSKTSLGRHQEQVIFVTTGKKSKRGKANTTPWLITCSAGDQ 60
           MATVSTAKSL YT+ SVY SSKTSLG HQE ++F  +GKKSK GKANT PWLITCSAGDQ
Sbjct: 1   MATVSTAKSLIYTHYSVYSSSKTSLGHHQEHIVFFASGKKSKSGKANTNPWLITCSAGDQ 60

Query: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120
           QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD
Sbjct: 61  QTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLD 120

Query: 121 RTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILV 180
           RTGRK+KGVTALDPRANDFDLMYEQVKALK GIAVEKPIYNHVTGLLDPPELIKPPKILV
Sbjct: 121 RTGRKQKGVTALDPRANDFDLMYEQVKALKSGIAVEKPIYNHVTGLLDPPELIKPPKILV 180

Query: 181 IEGLHPI 187
           IEGLHP+
Sbjct: 181 IEGLHPM 187

[Close]

BLAST of Lsi07G011510 vs. NCBI nr
Match: gi|593790334|ref|XP_007158206.1| (hypothetical protein PHAVU_002G133100g [Phaseolus vulgaris])

HSP 1 Score: 297.7 bits (761), Expect = 1.5e-77
Identity = 148/185 (80.00%), Postives = 165/185 (89.19%), Query Frame = 1


Query: 3   TVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKK-SKRGKANTTPWLITCSAGDQQT 62
           TV + +SL+   S+   SKT    HQ+QV+F TTG++ SKRG  +   ++ITC+A DQQT
Sbjct: 5   TVYSTQSLSTNCSISTPSKTQFSFHQKQVVFYTTGRRNSKRGSNSGRSYVITCAASDQQT 64

Query: 63  VVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDRT 122
           VVIGLAADSGCGKSTFMRRLTSVFGGAA+PP+GGNPDSNTLISDTTTVICLDDYHSLDRT
Sbjct: 65  VVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRT 124

Query: 123 GRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIE 182
           GRKEKGVTALDPRANDFDLMYEQVKA+KDGI+VEKPIYNHVTGLLDPPELIKPPKILVIE
Sbjct: 125 GRKEKGVTALDPRANDFDLMYEQVKAIKDGISVEKPIYNHVTGLLDPPELIKPPKILVIE 184

Query: 183 GLHPI 187
           GLHP+
Sbjct: 185 GLHPM 189

[Close]

BLAST of Lsi07G011510 vs. NCBI nr
Match: gi|590680109|ref|XP_007040771.1| (Phosphoribulokinase [Theobroma cacao])

HSP 1 Score: 297.4 bits (760), Expect = 2.0e-77
Identity = 151/188 (80.32%), Postives = 168/188 (89.36%), Query Frame = 1


Query: 1   MATVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKK-SKRGKANTT-PWLITCSAGD 60
           + TV T +SLN T S+   +KT LG HQ+QV+F +TGK+ SKRG +++  P +ITCSA D
Sbjct: 3   VCTVYTTQSLNSTCSISTPTKTHLGFHQKQVVFYSTGKRTSKRGSSSSGGPCVITCSAVD 62

Query: 61  QQTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSL 120
            QTVVIGLAADSGCGKSTFMRRLTSVFGGAA+PPRGGNPDSNTLISD TTVICLDDYHSL
Sbjct: 63  SQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDMTTVICLDDYHSL 122

Query: 121 DRTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKIL 180
           DRTGRKEKGVTALDPRAN+FDLMYEQVKALK G+AV+KPIYNHVTGLLDPPELIKPPKIL
Sbjct: 123 DRTGRKEKGVTALDPRANNFDLMYEQVKALKSGVAVDKPIYNHVTGLLDPPELIKPPKIL 182

Query: 181 VIEGLHPI 187
           VIEGLHP+
Sbjct: 183 VIEGLHPM 190

[Close]

BLAST of Lsi07G011510 vs. NCBI nr
Match: gi|965614063|dbj|BAT99695.1| (hypothetical protein VIGAN_10120200 [Vigna angularis var. angularis])

HSP 1 Score: 295.8 bits (756), Expect = 5.8e-77
Identity = 148/185 (80.00%), Postives = 165/185 (89.19%), Query Frame = 1


Query: 3   TVSTAKSLNYTNSVYPSSKTSLGRHQEQVIFVTTGKK-SKRGKANTTPWLITCSAGDQQT 62
           TV + +SL+   S+   SKT L  HQ+QV+F TT ++ SKRG  +   ++ITC+A DQQT
Sbjct: 5   TVYSTQSLSTNCSISTPSKTQLSFHQKQVVFYTTSRRNSKRGINSGRSYVITCAASDQQT 64

Query: 63  VVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDRT 122
           VVIGLAADSGCGKSTFMRRLTSVFGGAA+PP+GGNPDSNTLISDTTTVICLDDYHSLDRT
Sbjct: 65  VVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRT 124

Query: 123 GRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIE 182
           GRKEKGVTALDPRANDFDLMYEQVKA+KDGIAV+KPIYNHVTGLLDPPELIKPPKILVIE
Sbjct: 125 GRKEKGVTALDPRANDFDLMYEQVKAIKDGIAVQKPIYNHVTGLLDPPELIKPPKILVIE 184

Query: 183 GLHPI 187
           GLHP+
Sbjct: 185 GLHPM 189

The following BLAST results are available for this feature:

BLAST of Lsi07G011510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
KPPR_MESCR	3.3e-72	79.77	Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1	[more]
KPPR_ARATH	2.7e-66	70.97	Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=2 SV=...	[more]
KPPR_WHEAT	4.6e-66	71.82	Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1	[more]
KPPR_SPIOL	3.3e-64	74.25	Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1	[more]
KPPR_CHLRE	9.0e-54	72.22	Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=...	[more]

BLAST of Lsi07G011510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1R3_CUCSA	2.2e-91	91.44	Phosphoribulokinase OS=Cucumis sativus GN=Csa_3G006690 PE=3 SV=1	[more]
V7CLS9_PHAVU	1.1e-77	80.00	Phosphoribulokinase OS=Phaseolus vulgaris GN=PHAVU_002G133100g PE=3 SV=1	[more]
A0A061G7Z6_THECC	1.4e-77	80.32	Phosphoribulokinase OS=Theobroma cacao GN=TCM_016637 PE=3 SV=1	[more]
A0A0S3T4A7_PHAAN	4.0e-77	80.00	Phosphoribulokinase OS=Vigna angularis var. angularis GN=Vigan.10G120200 PE=3 SV...	[more]
A0A0L9TID4_PHAAN	4.0e-77	80.00	Phosphoribulokinase OS=Phaseolus angularis GN=LR48_Vigan983s000500 PE=3 SV=1	[more]

BLAST of Lsi07G011510 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32060.1	1.5e-67	70.97	phosphoribulokinase	[more]
AT1G26190.1	4.3e-06	26.87	Phosphoribulokinase / Uridine kinase family	[more]

BLAST of Lsi07G011510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095509\|ref\|XP_008448619.1\|	6.4e-92	91.98	PREDICTED: phosphoribulokinase, chloroplastic-like [Cucumis melo]	[more]
gi\|449456747\|ref\|XP_004146110.1\|	3.2e-91	91.44	PREDICTED: phosphoribulokinase, chloroplastic [Cucumis sativus]	[more]
gi\|593790334\|ref\|XP_007158206.1\|	1.5e-77	80.00	hypothetical protein PHAVU_002G133100g [Phaseolus vulgaris]	[more]
gi\|590680109\|ref\|XP_007040771.1\|	2.0e-77	80.32	Phosphoribulokinase [Theobroma cacao]	[more]
gi\|965614063\|dbj\|BAT99695.1\|	5.8e-77	80.00	hypothetical protein VIGAN_10120200 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016301	kinase activity
GO:0008974	phosphoribulokinase activity
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process
GO:0005975	carbohydrate metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR006083	PRK/URK
IPR006082	PRK

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0015976	carbon utilization
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0043097	pyrimidine nucleoside salvage
biological_process	GO:0006222	UMP biosynthetic process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008974	phosphoribulokinase activity
molecular_function	GO:0004849	uridine kinase activity
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G011510.1	Lsi07G011510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006082	Phosphoribulokinase	PRINTS	PR00478	PHRIBLKINASE	coord: 68..85 score: 6.2E-9coord: 177..195 score: 6.
IPR006083	Phosphoribulokinase/uridine kinase	PFAM	PF00485	PRK	coord: 63..186 score: 1.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 59..187 score: 8.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 60..186 score: 1.13
None	No IPR available	PANTHER	PTHR10285	URIDINE KINASE	coord: 51..186 score: 1.1
None	No IPR available	PANTHER	PTHR10285:SF74	PHOSPHORIBULOKINASE, CHLOROPLASTIC	coord: 51..186 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G011510	Cucurbita pepo (Zucchini)	cpelsiB630
Lsi07G011510	Cucurbita pepo (Zucchini)	cpelsiB725
Lsi07G011510	Wild cucumber (PI 183967)	cpilsiB227
Lsi07G011510	Cucumber (Chinese Long) v2	culsiB228
Lsi07G011510	Melon (DHL92) v3.5.1	lsimeB446
Lsi07G011510	Watermelon (Charleston Gray)	lsiwcgB389
Lsi07G011510	Watermelon (97103) v1	lsiwmB429
Lsi07G011510	Cucumber (Gy14) v2	cgyblsiB217
Lsi07G011510	Melon (DHL92) v3.6.1	lsimedB462
Lsi07G011510	Silver-seed gourd	carlsiB721
Lsi07G011510	Silver-seed gourd	carlsiB882
Lsi07G011510	Silver-seed gourd	carlsiB958
Lsi07G011510	Cucumber (Chinese Long) v3	cuclsiB250
Lsi07G011510	Watermelon (97103) v2	lsiwmbB395
Lsi07G011510	Wax gourd	lsiwgoB566
Lsi07G011510	Wax gourd	lsiwgoB574
Lsi07G011510	Bottle gourd (USVL1VR-Ls)	lsilsiB000
Lsi07G011510	Cucumber (Gy14) v1	cgylsiB530
Lsi07G011510	Cucurbita maxima (Rimu)	cmalsiB324
Lsi07G011510	Cucurbita maxima (Rimu)	cmalsiB496
Lsi07G011510	Cucurbita maxima (Rimu)	cmalsiB591
Lsi07G011510	Cucurbita maxima (Rimu)	cmalsiB772
Lsi07G011510	Cucurbita moschata (Rifu)	cmolsiB313
Lsi07G011510	Cucurbita moschata (Rifu)	cmolsiB481
Lsi07G011510	Cucurbita moschata (Rifu)	cmolsiB574
Lsi07G011510	Cucurbita moschata (Rifu)	cmolsiB763
Lsi07G011510	Cucurbita pepo (Zucchini)	cpelsiB183
Lsi07G011510	Cucurbita pepo (Zucchini)	cpelsiB218