Lsi05G018750.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G018750.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cytochrome c oxidase-assembly factor COX23, mitochondrial
Location	chr05 : 25952645 .. 25955415 (+)
Sequence length	520

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTCCTCTCGATACAATTACGTATAAAAGGAGATTGATTCTCTTGCTTTCTCATCGGAATTTCAGGCAGCCATTTTAACCGACCTCTATTTTTCCACCGAGACAGAGTGAGCTTTTCCGCCATGGCTTCCACTTCTAGGGATCCGGCTCCGCCGTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTGAAATGTAGGTTTCACTCTCGTACTCCCTCTCCATTATTCTCAATTTTTTTCGTTTTGCTTTGATTCTCCGCCAAATATTTACGTGTCTGTGCTACCATTATCTCACCATTTGGACTTCTTCTACACTGGTTCACTTGAGAATGATTGCGTGCTGCTGTGCATCAATTTTTTCAGTTTGTGTTCTGGATGGTTAAACTCTCGAATTTGTTGTTGGCTGTGATCGTGCAAACTCTAATTTTCGCGGCGATTCTCTATGCTCTGTTAGTTGAATAATTGGTTAGCCTGTTTTATTTCATTTTCTAGGGATGCTATTTCCATCCAATTTAGGTCAATTGATGAAGAGGAAGCAAACTTAAATGTATTATTGATCGGATGATAATCTTAAAAACAAAATAGGGTTTACCAGGGTATTAGTTGATAGAGCGCTCGTGAGAGTTCTTAGAGTGGCTATTCTAACTATGGCAATGGTGGAAAAGGAACTTTTACTAGGATATTGAAGCCGAAAGCTCTTAATCCCCCGTTCCTTAGGGCCAAGTTCTTATTTAAAATATCAAAGTAGGAAAGAATGTTAGATGTTTAATGCAGAAGCCTCGAGCTGCAACTTAAGGAAAGATTGTTAACGGAAAGCATGCATAACTGGTAATGGCTGATAAATCAGGTGTAAAGTGAAATTTTAATTTGAATTTGTAAATGAGTACTATCGTTATTGATCCTGATAAAGTGTAGCTTAATCTTTGGTGTGTTATAAATCATCCAATGAGAAGTTGGTGTTTAGAATACTAATTTTGTAGATTTTGAATTTTATTTTTATGTCAGAGAACATTTTGAACTTCTTATCAAAGAAACTCTCTTTTCCAAATGCTATAGGTCTTGAAGAACATAGCTCCGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGTATGTTCTTTTCTTAGTTATCACATGAAATTGGAATGGAGGAACATTTCATCGTGTGTGGTACTGTTACTGGAAGCATACACTCACTATTTATGGGAATTTGACTTAAACTGAGATGATGGTACTAACTAACCAAGGTTGCAATTGCTCTGATTTGACTAGTTACTTAACTTGTTCTGTTTTTTGCCTCTTTGGAGTCTGCTCGTTTGCTTGTGACGTTAATGGATCAAGGAAATTTAAACAATATCCTCATCTCATTTGGACATAATTGGATAACCAGTGTGTCATTGAGTTAGTTATGTGCTCAATCTTAAAGGAATGTGTTAAAATATGATTTTGGTCCTCACAAGAAGTTCTATTTTGATCTTTCAAATTTTAGTAATTTCTATATAAGATATTCTATCCTAGTTAAAATCTGTAACGAAGAAGTGACTGGACTAATTTTCTGATATCAGATTTATATGCAAGTGATGTATTACATGTCTATGTTGTCTCTTCCATGTGATAACCTTTTTTTAGTTATATGTTGATCTGCAACAATATAGAATGCCATTTATTTTTTGTATGCAAGTCTTTGACTCAGATTTTAATGATAGATTGAATTTGAAATTATTGAAGCTTGAGGGTCTAACATAAAAACTTTTTGGAACTTTGGGTTTTAACTTCAAGAATTAAAATTACTCTATGACCTGGAAGATACATGGCATATAAGGTGAGAAGTATATGTGGTTCATGATACTATGGAAACTTTAAAACCCTCTTCCTGTGTATTCCATAACATTTATGAATCCTATCTGGGTTTAGTAGATATAGAAATGTTCCATAGGCTGTCATTTAATTCCTTGGTTAGTAGAGTAGCATCATGCACCAACTCTTAATAAGACATTGCCTCGTAACGCGACTGAGATCTGTCTCCTTTACAGCGGGAAGATCGATTGGAACGCAACAAGAAACGGTCTTTCTTCTCATGAAATTGTTTCTTGATGTTGAAGTTATGTAAGTTTAATATACAATCTACACACGTTTATTAACCTTCTTGTAGCAGTAGATTTATCTGGTGCCTCATTGAGACAATGACTCGGCATGTATTGCCCACTTACTATCATTCGTCTATTAATAAAAGATGCATACCATCTTTATGTTCAATTATCTCCATGTTGATCAATTTTCATTCTTAAAGTGTAGGAATCTGTAAACATTGATCCTCCATTTGATCTAAATAGTGCAGGCTACAATCACGATTAACCCGTTAGGCGGTCAAGAATTTACGACAGCAGTTGAGGTATTTACCTTTTTTAAGAGGGCGTACGTTAAAAGCTCCGATGTTATATGATAGTTCTATGATATACAATGATTTCTAACTTTTAAGTTGAAAATACAATGTTTTATTCGATTTGATACTTTTTTAAAAAAGGGTTTAAAATTCAAATCTCCCAACCAATATATGAAGAAATGACTGATATTGATTTGAGTCTTATTTGATAGGCTATTGATTATATTAGAAGTTTATAGTGAAGATGAATTATAATTCAAACCACCCATTTTCTGCTCAATGATGATCGTATGCCTTGAACTTATGTTCACATTTGGTTTATTCTATGAAATGTCTACC

mRNA sequence

GGGTCCTCTCGATACAATTACGTATAAAAGGAGATTGATTCTCTTGCTTTCTCATCGGAATTTCAGGCAGCCATTTTAACCGACCTCTATTTTTCCACCGAGACAGAGTGAGCTTTTCCGCCATGGCTTCCACTTCTAGGGATCCGGCTCCGCCGTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTGAAATGTCTTGAAGAACATAGCTCCGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGAATCTGTAAACATTGATCCTCCATTTGATCTAAATAGTGCAGGCTACAATCACGATTAACCCGTTAGGCGGTCAAGAATTTACGACAGCAGTTGAGGCTATTGATTATATTAGAAGTTTATAGTGAAGATGAATTATAATTCAAACCACCCATTTTCTGCTCAATGATGATCGTATGCCTTGAACTTATGTTCACATTTGGTTTATTCTATGAAATGTCTACC

Coding sequence (CDS)

ATGGCTTCCACTTCTAGGGATCCGGCTCCGCCGTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTGAAATGTCTTGAAGAACATAGCTCCGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGAATCTGTAAACATTGATCCTCCATTTGATCTAAATAGTGCAGGCTACAATCACGATTAA

Protein sequence

MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEESVNIDPPFDLNSAGYNHD

Homology

[Close]

BLAST of Lsi05G018750.1 vs. TrEMBL
Match: A0A0A0L4K5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129550 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-22
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEES 60
          MASTSRDP PPY SAARISDSPCYPQYSASLKCLE HSSEKSKCQEHFDVYKECKKKE  
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 VNID 65
            ++
Sbjct: 61 ARLE 64

[Close]

BLAST of Lsi05G018750.1 vs. TrEMBL
Match: A0A067H3E1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034917mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-17
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEES 60
          MAS      PPYASAARISDS CYPQY+ASLKCLEE S++KSKCQEHFDVYKECKKKE  
Sbjct: 1  MASGPATDTPPYASAARISDSQCYPQYTASLKCLEEFSTDKSKCQEHFDVYKECKKKERE 60

Query: 61 VNID 65
            ++
Sbjct: 61 ARLE 64

[Close]

BLAST of Lsi05G018750.1 vs. TrEMBL
Match: V4U3S5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023064mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-17
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEES 60
          MAS      PPYASAARISDS CYPQY+ASLKCLEE S++KSKCQEHFDVYKECKKKE  
Sbjct: 14 MASGPATDTPPYASAARISDSQCYPQYTASLKCLEEFSTDKSKCQEHFDVYKECKKKERE 73

Query: 61 VNID 65
            ++
Sbjct: 74 ARLE 77

[Close]

BLAST of Lsi05G018750.1 vs. TrEMBL
Match: A0A0D2SYR1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G110500 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.1e-17
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 5  SRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEESVNID 64
          SR   PPY SAARI+DSPC+PQY+ASLKCLEE+ S+KSKCQEHFDVYKECKKKE    ++
Sbjct: 3  SRAATPPYPSAARIADSPCFPQYTASLKCLEEYGSDKSKCQEHFDVYKECKKKEREARLE 62

[Close]

BLAST of Lsi05G018750.1 vs. TrEMBL
Match: A0A103Y109_CYNCS (CHCH-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_021201 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.6e-17
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 4  TSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEES 61
          +S+D  PPY +AARISDS CYPQY+ASLKCLEE SS+KSKCQEHFDVYKECKKKE S
Sbjct: 3  SSKDQLPPYPNAARISDSQCYPQYTASLKCLEEFSSDKSKCQEHFDVYKECKKKEVS 59

[Close]

BLAST of Lsi05G018750.1 vs. TAIR10
Match: AT1G02160.2 (AT1G02160.2 Cox19 family protein (CHCH motif))

HSP 1 Score: 84.7 bits (208), Expect = 2.7e-17
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 4  TSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          +++  A  Y SAARISDSPCY QYSASLKCLEE  S+KSKCQ+HFDVYKECKKKE
Sbjct: 2  STKGAAAAYPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKE 56

[Close]

BLAST of Lsi05G018750.1 vs. NCBI nr
Match: gi|449432370|ref|XP_004133972.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-22
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEES 60
          MASTSRDP PPY SAARISDSPCYPQYSASLKCLE HSSEKSKCQEHFDVYKECKKKE  
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 VNID 65
            ++
Sbjct: 61 ARLE 64

[Close]

BLAST of Lsi05G018750.1 vs. NCBI nr
Match: gi|1021572451|ref|XP_016177335.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X1 [Arachis ipaensis])

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-19
Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = 1


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEES 60
          MAS S+   PPYASAARISDSPC+PQY+ASLKCLEE SS KSKCQEHFDVYKECKKKE  
Sbjct: 1  MASNSKGSTPPYASAARISDSPCFPQYTASLKCLEEFSSNKSKCQEHFDVYKECKKKE-- 60

Query: 61 VNIDPPFDLN 71
          ++ + PF+ N
Sbjct: 61 LHNEQPFESN 68

[Close]

BLAST of Lsi05G018750.1 vs. NCBI nr
Match: gi|1012232009|ref|XP_015938627.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X1 [Arachis duranensis])

HSP 1 Score: 101.3 bits (251), Expect = 7.8e-19
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 1


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEES 60
          MAS S+   PPYASAARISDSPC+PQY+ASLKCLEE SS KSKCQEHFDVYKECKKKE  
Sbjct: 1  MASNSKGSTPPYASAARISDSPCFPQYTASLKCLEEFSSNKSKCQEHFDVYKECKKKERE 60

Query: 61 VNID 65
            ++
Sbjct: 61 ARLE 64

[Close]

BLAST of Lsi05G018750.1 vs. NCBI nr
Match: gi|1012232013|ref|XP_015938628.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X2 [Arachis duranensis])

HSP 1 Score: 99.8 bits (247), Expect = 2.3e-18
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 1


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS S+   PPYASAARISDSPC+PQY+ASLKCLEE SS KSKCQEHFDVYKECKKKE
Sbjct: 1  MASNSKGSTPPYASAARISDSPCFPQYTASLKCLEEFSSNKSKCQEHFDVYKECKKKE 58

[Close]

BLAST of Lsi05G018750.1 vs. NCBI nr
Match: gi|1009170379|ref|XP_015866168.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 97.8 bits (242), Expect = 8.6e-18
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 5  SRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEESVNID 64
          S+   PPY SAARISDSPCYPQYSASLKCLEE+ S+KSKCQEHFD+YKECKKKE    ++
Sbjct: 37 SKSSTPPYPSAARISDSPCYPQYSASLKCLEEYQSDKSKCQEHFDIYKECKKKEREARLE 96

The following BLAST results are available for this feature:

BLAST of Lsi05G018750.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G018750.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4K5_CUCSA	1.1e-22	85.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129550 PE=4 SV=1	[more]
A0A067H3E1_CITSI	3.0e-17	73.44	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034917mg PE=4 SV=1	[more]
V4U3S5_9ROSI	3.0e-17	73.44	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023064mg PE=4 SV=1	[more]
A0A0D2SYR1_GOSRA	5.1e-17	73.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G110500 PE=4 SV=1	[more]
A0A103Y109_CYNCS	6.6e-17	80.70	CHCH-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_021201 PE=4 SV=1	[more]

BLAST of Lsi05G018750.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G02160.2	2.7e-17	76.36	Cox19 family protein (CHCH motif)	[more]

BLAST of Lsi05G018750.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432370\|ref\|XP_004133972.1\|	1.5e-22	85.94	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sa...	[more]
gi\|1021572451\|ref\|XP_016177335.1\|	3.5e-19	74.29	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X1 ...	[more]
gi\|1012232009\|ref\|XP_015938627.1\|	7.8e-19	76.56	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X1 ...	[more]
gi\|1012232013\|ref\|XP_015938628.1\|	2.3e-18	84.48	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X2 ...	[more]
gi\|1009170379\|ref\|XP_015866168.1\|	8.6e-18	75.00	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial-like [Zizip...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010625	CHCH
IPR009069	Cys_alpha_HP_mot_SF

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi05G018750	Lsi05G018750	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi05G018750.1	Lsi05G018750.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G018750.1.five_prime_UTR.1	Lsi05G018750.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G018750.1.CDS.1	Lsi05G018750.1.CDS.1	CDS
Lsi05G018750.1.CDS.2	Lsi05G018750.1.CDS.2	CDS
Lsi05G018750.1.CDS.3	Lsi05G018750.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G018750.1.three_prime_UTR.1	Lsi05G018750.1.three_prime_UTR.1	three_prime_UTR
Lsi05G018750.1.three_prime_UTR.2	Lsi05G018750.1.three_prime_UTR.2	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009069	Cysteine alpha-hairpin motif superfamily	GENE3D	G3DSA:1.10.810.10		coord: 20..58 score: 2.
IPR009069	Cysteine alpha-hairpin motif superfamily	unknown	SSF47072	Cysteine alpha-hairpin motif	coord: 21..57 score: 8.89
IPR010625	CHCH	PFAM	PF06747	CHCH	coord: 23..57 score: 1.
None	No IPR available	PANTHER	PTHR21588	COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 6	coord: 10..61 score: 1.4