Lsi05G021380.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G021380.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Dof zinc finger protein
Location	chr05 : 28199110 .. 28199631 (+)
Sequence length	522

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCGATGATGGAGTCCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGAGGGTTGAAGGGAAAGGGAAGGCCACAAGAGCAATTGAACTGCCCAAGGTGCAAATCAAGCAACACAAAATTCTGTTACTACAATAATTATAGTCTCACACAGCCGAGGTATTTTTGCAAATCTTGCCGCCGGTATTGGACGGAGGGCGGTTCTCTTAGGAACATCCCTGTCGGAGGAGGGTCCCGGAAGAATAGGAAACCACCCGGTTCGGTTGTTGGTGGGTCGGGTTCGGCTCACCACGCGCCGCCGCCGCCGGCGCAGGTGTATCAAGCGCATGATCTGAATTTGGGGTTTGCGACGGCGGAGGCCACGGCGACGACGATGGGGATGGAAAACGGCGGCCACGGAGGATTTGGATGTTATATACCGAATTTGATGCCATATTCAGCACGTGACACGGCGACGGTGGAAGAGAATTCCGGTAATAATGGGTATTGGAACGGAATGTTCGGTGGAGGGCCGCCGTGGTAG

mRNA sequence

ATGGAGGCGATGATGGAGTCCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGAGGGTTGAAGGGAAAGGGAAGGCCACAAGAGCAATTGAACTGCCCAAGGTGCAAATCAAGCAACACAAAATTCTGTTACTACAATAATTATAGTCTCACACAGCCGAGGTATTTTTGCAAATCTTGCCGCCGGTATTGGACGGAGGGCGGTTCTCTTAGGAACATCCCTGTCGGAGGAGGGTCCCGGAAGAATAGGAAACCACCCGGTTCGGTTGTTGGTGGGTCGGGTTCGGCTCACCACGCGCCGCCGCCGCCGGCGCAGGTGTATCAAGCGCATGATCTGAATTTGGGGTTTGCGACGGCGGAGGCCACGGCGACGACGATGGGGATGGAAAACGGCGGCCACGGAGGATTTGGATGTTATATACCGAATTTGATGCCATATTCAGCACGTGACACGGCGACGGTGGAAGAGAATTCCGGTAATAATGGGTATTGGAACGGAATGTTCGGTGGAGGGCCGCCGTGGTAG

Coding sequence (CDS)

ATGGAGGCGATGATGGAGTCCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGAGGGTTGAAGGGAAAGGGAAGGCCACAAGAGCAATTGAACTGCCCAAGGTGCAAATCAAGCAACACAAAATTCTGTTACTACAATAATTATAGTCTCACACAGCCGAGGTATTTTTGCAAATCTTGCCGCCGGTATTGGACGGAGGGCGGTTCTCTTAGGAACATCCCTGTCGGAGGAGGGTCCCGGAAGAATAGGAAACCACCCGGTTCGGTTGTTGGTGGGTCGGGTTCGGCTCACCACGCGCCGCCGCCGCCGGCGCAGGTGTATCAAGCGCATGATCTGAATTTGGGGTTTGCGACGGCGGAGGCCACGGCGACGACGATGGGGATGGAAAACGGCGGCCACGGAGGATTTGGATGTTATATACCGAATTTGATGCCATATTCAGCACGTGACACGGCGACGGTGGAAGAGAATTCCGGTAATAATGGGTATTGGAACGGAATGTTCGGTGGAGGGCCGCCGTGGTAG

Protein sequence

MEAMMESGSGGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKNRKPPGSVVGGSGSAHHAPPPPAQVYQAHDLNLGFATAEATATTMGMENGGHGGFGCYIPNLMPYSARDTATVEENSGNNGYWNGMFGGGPPW

Homology

[Close]

BLAST of Lsi05G021380.1 vs. Swiss-Prot
Match: DOF25_ARATH (Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3)

HSP 1 Score: 125.9 bits (315), Expect = 4.2e-28
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 22  KGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKN 81
           K RPQE+LNCPRC S+NTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRN+PVGG SRKN
Sbjct: 73  KARPQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKN 132

Query: 82  RKPPGS 88
           ++   S
Sbjct: 133 KRSSSS 138

[Close]

BLAST of Lsi05G021380.1 vs. Swiss-Prot
Match: DOF41_ARATH (Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1 PE=2 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 7.1e-28
Identity = 65/109 (59.63%), Postives = 75/109 (68.81%), Query Frame = 1


Query: 24  RPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKNRK 83
           RPQE  NCPRC SSNTKFCYYNNYSL QPRY CKSCRRYWTEGGSLRN+PVGGGSRKN+K
Sbjct: 63  RPQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 122

Query: 84  PPGSVVGGSGSAHHAP---PP-----------PAQVYQ-AHDLNLGFAT 118
            P      S S  + P   PP           P++ +Q  +DL+L F++
Sbjct: 123 LPFPNSSTSSSTKNLPDLNPPFVFTSSASSSNPSKTHQNNNDLSLSFSS 171

[Close]

BLAST of Lsi05G021380.1 vs. Swiss-Prot
Match: DOF37_ARATH (Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2)

HSP 1 Score: 119.0 bits (297), Expect = 5.1e-26
Identity = 57/82 (69.51%), Postives = 64/82 (78.05%), Query Frame = 1


Query: 7   SGSGGGGGGGGGLKG-----KGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRR 66
           + S GG GG           K RPQE++NCPRC S+NTKFCYYNNYSLTQPRYFCK CRR
Sbjct: 47  TASNGGSGGNTNNTATMETRKARPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRR 106

Query: 67  YWTEGGSLRNIPVGGGSRKNRK 84
           YWTEGGSLRN+PVGG SRKN++
Sbjct: 107 YWTEGGSLRNVPVGGSSRKNKR 128

[Close]

BLAST of Lsi05G021380.1 vs. Swiss-Prot
Match: DOF46_ARATH (Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 6.6e-26
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 16  GGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVG 75
           GG  K +    + +NCPRC S+NTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRNIPVG
Sbjct: 40  GGERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVG 99

Query: 76  GGSRKNRKPPGS 88
           GGSRKN++   S
Sbjct: 100 GGSRKNKRSHSS 111

[Close]

BLAST of Lsi05G021380.1 vs. Swiss-Prot
Match: PBF_MAIZE (Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.7e-26
Identity = 69/147 (46.94%), Postives = 86/147 (58.50%), Query Frame = 1


Query: 16  GGGLKGKGRPQ--EQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIP 75
           GG  + K RPQ  E L CPRC S+NTKFCYYNNYS++QPRYFCK+CRRYWT GG+LRN+P
Sbjct: 45  GGSGERKPRPQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVP 104

Query: 76  VGGGSRKNRKPP----GSVVGGSGSAHHAPPPPAQVYQAHDLNLGF------ATAEATAT 135
           +GGG RKN+       GS    S SA +AP  P+    + ++++             T T
Sbjct: 105 IGGGCRKNKHASRFVLGSHTSSSSSATYAPLSPSTNASSSNMSINKHMMMVPNMTMPTPT 164

Query: 136 TMG---------MENGGHGGFGCYIPN 142
           TMG         M  GG GGF   + N
Sbjct: 165 TMGLFPNVLPTLMPTGGGGGFDFTMDN 191

[Close]

BLAST of Lsi05G021380.1 vs. TrEMBL
Match: A0A0A0L5U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119420 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 7.3e-80
Identity = 154/175 (88.00%), Postives = 157/175 (89.71%), Query Frame = 1


Query: 1   MEAMMESGS--GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS 60
           MEAMMESG+  GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS
Sbjct: 1   MEAMMESGANGGGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS 60

Query: 61  CRRYWTEGGSLRNIPVGGGSRKNRKPPGSVVGGSGSAHHAPPPPAQVYQAHDLNLGFATA 120
           CRRYWTEGGSLRNIPVGGGSRKNRKP GS V GSGS HH P P  QVYQA DLNLGFAT 
Sbjct: 61  CRRYWTEGGSLRNIPVGGGSRKNRKPHGS-VSGSGSVHH-PQPQPQVYQAQDLNLGFATT 120

Query: 121 EATATTMGMENGGHGGFGCYIPNLMPYSARDTATVEENSGNNGYWNGMFGGGPPW 174
            A ATT  M+NGGHGGFGCYIPNLMPYS R+TA VEENSGNNGYWNGMFGGGPPW
Sbjct: 121 -AEATT-AMDNGGHGGFGCYIPNLMPYSGRETAAVEENSGNNGYWNGMFGGGPPW 171

[Close]

BLAST of Lsi05G021380.1 vs. TrEMBL
Match: B9GR41_POPTR (DOF AFFECTING GERMINATION 2 family protein OS=Populus trichocarpa GN=POPTR_0002s17490g PE=4 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 1.6e-31
Identity = 75/141 (53.19%), Postives = 89/141 (63.12%), Query Frame = 1


Query: 19  LKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGS 78
           L+ K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGGS
Sbjct: 14  LERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGS 73

Query: 79  RKNRKPPGSVVGGSGSAHHAP---PP---------PAQVYQAHDLNLGFATAEATATTMG 138
           RKN++   S V  S +    P   PP         P   ++  DLNL F   + +     
Sbjct: 74  RKNKRSTSSSVAASAAPSKLPDLNPPNLSHFSSQNPKSAHEGQDLNLAFPAMQDSQALEL 133

Query: 139 MENG-GHGGFGCYIPNLMPYS 147
           + +G    G   +IP  MP S
Sbjct: 134 LRSGIASRGLNSFIPTPMPDS 154

[Close]

BLAST of Lsi05G021380.1 vs. TrEMBL
Match: U5FT89_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09640g PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.7e-31
Identity = 76/143 (53.15%), Postives = 91/143 (63.64%), Query Frame = 1


Query: 15  GGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPV 74
           G  G++ K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PV
Sbjct: 10  GRPGVERKPRPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPV 69

Query: 75  GGGSRKNRKPPGSVVGGSGS----------AHHAPPPPAQVYQAHDLNLGF-ATAEATAT 134
           GGGSRKN++   S V  S S          +H +   P   ++  DLNL F A  ++ A 
Sbjct: 70  GGGSRKNKRSTSSSVATSSSKLPDLNPPSLSHFSSQNPKSTHEGQDLNLAFPAMQDSQAM 129

Query: 135 TMGMENGGHGGFGCYIPNLMPYS 147
            +        G   +IP  MP S
Sbjct: 130 ELLRSGFASRGLNTFIPTPMPDS 152

[Close]

BLAST of Lsi05G021380.1 vs. TrEMBL
Match: A0A072TM78_MEDTR (Dof-type zinc finger DNA-binding family protein OS=Medicago truncatula GN=MTR_8g027295 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.8e-31
Identity = 73/123 (59.35%), Postives = 83/123 (67.48%), Query Frame = 1


Query: 18  GLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGG 77
           GL+ K RPQEQ+NCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGG
Sbjct: 13  GLEKKARPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGG 72

Query: 78  SRKNRKPPGSVVGGSGSAHHAP---PPPAQVYQ----------AHDLNLGFATAEATATT 128
           SRKN+K P S+   + S+   P   PP  QV              DLNL F + E     
Sbjct: 73  SRKNKKIPSSLANPNNSSSKIPDLNPPTLQVSHLSSQNPKIQGGQDLNLAFPSMENYHHN 132

[Close]

BLAST of Lsi05G021380.1 vs. TrEMBL
Match: B9I901_POPTR (DOF AFFECTING GERMINATION 2 family protein OS=Populus trichocarpa GN=POPTR_0014s09640g PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-29
Identity = 68/111 (61.26%), Postives = 79/111 (71.17%), Query Frame = 1


Query: 15  GGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPV 74
           G  G++ K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PV
Sbjct: 10  GRPGVERKPRPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPV 69

Query: 75  GGGSRKNRKPPGSVVGGSGS----------AHHAPPPPAQVYQAHDLNLGF 116
           GGGSRKN++   S V  S S          +H +   P   ++  DLNL F
Sbjct: 70  GGGSRKNKRSTSSSVATSSSKLPDLNPPSLSHFSSQNPKSTHEGQDLNLAF 120

[Close]

BLAST of Lsi05G021380.1 vs. TAIR10
Match: AT2G46590.2 (AT2G46590.2 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 125.9 bits (315), Expect = 2.3e-29
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 22  KGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKN 81
           K RPQE+LNCPRC S+NTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRN+PVGG SRKN
Sbjct: 73  KARPQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKN 132

Query: 82  RKPPGS 88
           ++   S
Sbjct: 133 KRSSSS 138

[Close]

BLAST of Lsi05G021380.1 vs. TAIR10
Match: AT4G00940.1 (AT4G00940.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 125.2 bits (313), Expect = 4.0e-29
Identity = 65/109 (59.63%), Postives = 75/109 (68.81%), Query Frame = 1


Query: 24  RPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKNRK 83
           RPQE  NCPRC SSNTKFCYYNNYSL QPRY CKSCRRYWTEGGSLRN+PVGGGSRKN+K
Sbjct: 63  RPQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 122

Query: 84  PPGSVVGGSGSAHHAP---PP-----------PAQVYQ-AHDLNLGFAT 118
            P      S S  + P   PP           P++ +Q  +DL+L F++
Sbjct: 123 LPFPNSSTSSSTKNLPDLNPPFVFTSSASSSNPSKTHQNNNDLSLSFSS 171

[Close]

BLAST of Lsi05G021380.1 vs. TAIR10
Match: AT3G61850.4 (AT3G61850.4 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-27
Identity = 57/82 (69.51%), Postives = 64/82 (78.05%), Query Frame = 1


Query: 7   SGSGGGGGGGGGLKG-----KGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRR 66
           + S GG GG           K RPQE++NCPRC S+NTKFCYYNNYSLTQPRYFCK CRR
Sbjct: 47  TASNGGSGGNTNNTATMETRKARPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRR 106

Query: 67  YWTEGGSLRNIPVGGGSRKNRK 84
           YWTEGGSLRN+PVGG SRKN++
Sbjct: 107 YWTEGGSLRNVPVGGSSRKNKR 128

[Close]

BLAST of Lsi05G021380.1 vs. TAIR10
Match: AT4G24060.1 (AT4G24060.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 118.6 bits (296), Expect = 3.7e-27
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 16  GGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVG 75
           GG  K +    + +NCPRC S+NTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRNIPVG
Sbjct: 40  GGERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVG 99

Query: 76  GGSRKNRKPPGS 88
           GGSRKN++   S
Sbjct: 100 GGSRKNKRSHSS 111

[Close]

BLAST of Lsi05G021380.1 vs. TAIR10
Match: AT2G37590.1 (AT2G37590.1 DNA binding with one finger 2.4)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-26
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = 1


Query: 7   SGSGGGGGGGGGLKGKGR------------PQEQLNCPRCKSSNTKFCYYNNYSLTQPRY 66
           +GSGGGGGGGGG    G             P+  L CPRC+S+NTKFCY+NNYSLTQPR+
Sbjct: 55  NGSGGGGGGGGGSIRAGSMVDRARQANVALPEAALKCPRCESTNTKFCYFNNYSLTQPRH 114

Query: 67  FCKSCRRYWTEGGSLRNIPVGGGSRKNRK 84
           FCK+CRRYWT GG+LRN+PVGGG R+NR+
Sbjct: 115 FCKTCRRYWTRGGALRNVPVGGGCRRNRR 143

[Close]

BLAST of Lsi05G021380.1 vs. NCBI nr
Match: gi|659074919|ref|XP_008437866.1| (PREDICTED: dof zinc finger protein DOF3.7-like [Cucumis melo])

HSP 1 Score: 307.8 bits (787), Expect = 1.2e-80
Identity = 154/179 (86.03%), Postives = 156/179 (87.15%), Query Frame = 1


Query: 1   MEAMMESGS------GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRY 60
           MEAMMESG       GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRY
Sbjct: 1   MEAMMESGGNGGGGGGGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRY 60

Query: 61  FCKSCRRYWTEGGSLRNIPVGGGSRKNRKPPGSVVGGSGSAHHAPPPPAQVYQAHDLNLG 120
           FCK+CRRYWTEGGSLRNIPVGGGSRKNRKP GSV  GSGS HH  P P QVYQA DLNLG
Sbjct: 61  FCKACRRYWTEGGSLRNIPVGGGSRKNRKPTGSV-SGSGSVHHPQPQP-QVYQAQDLNLG 120

Query: 121 FATAEATATTMGMENGGHGGFGCYIPNLMPYSARDTATVEENSGNNGYWNGMFGGGPPW 174
           FATAEAT     MENGGHGGFGCYIPNLMPYS R+TA VEENSGNNGYWNGMFGGGPPW
Sbjct: 121 FATAEATTA---MENGGHGGFGCYIPNLMPYSGRETAAVEENSGNNGYWNGMFGGGPPW 174

[Close]

BLAST of Lsi05G021380.1 vs. NCBI nr
Match: gi|778676830|ref|XP_011650669.1| (PREDICTED: dof zinc finger protein DOF3.7 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 1.0e-79
Identity = 154/175 (88.00%), Postives = 157/175 (89.71%), Query Frame = 1


Query: 1   MEAMMESGS--GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS 60
           MEAMMESG+  GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS
Sbjct: 1   MEAMMESGANGGGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS 60

Query: 61  CRRYWTEGGSLRNIPVGGGSRKNRKPPGSVVGGSGSAHHAPPPPAQVYQAHDLNLGFATA 120
           CRRYWTEGGSLRNIPVGGGSRKNRKP GS V GSGS HH P P  QVYQA DLNLGFAT 
Sbjct: 61  CRRYWTEGGSLRNIPVGGGSRKNRKPHGS-VSGSGSVHH-PQPQPQVYQAQDLNLGFATT 120

Query: 121 EATATTMGMENGGHGGFGCYIPNLMPYSARDTATVEENSGNNGYWNGMFGGGPPW 174
            A ATT  M+NGGHGGFGCYIPNLMPYS R+TA VEENSGNNGYWNGMFGGGPPW
Sbjct: 121 -AEATT-AMDNGGHGGFGCYIPNLMPYSGRETAAVEENSGNNGYWNGMFGGGPPW 171

[Close]

BLAST of Lsi05G021380.1 vs. NCBI nr
Match: gi|743790303|ref|XP_011038563.1| (PREDICTED: dof zinc finger protein DOF3.7-like isoform X4 [Populus euphratica])

HSP 1 Score: 149.8 bits (377), Expect = 4.3e-33
Identity = 90/211 (42.65%), Postives = 107/211 (50.71%), Query Frame = 1


Query: 22  KGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKN 81
           K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGGSRKN
Sbjct: 34  KPRPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKN 93

Query: 82  RKPPGSVVGGSGS----------AHHAPPPPAQVYQAHDLNLGF-ATAEATATTMGMENG 141
           ++   S V  S S           H +   P   ++  DLNL F A  ++ A  +     
Sbjct: 94  KRSTSSSVAASSSKIPDLNPPSLPHFSSQNPKSTHEGQDLNLAFPAMQDSQAMELLRSGF 153

Query: 142 GHGGFGCYIPNLMP-----YSA-------------------RDTATVEENSG-------- 171
              G   +IP  MP     YS+                   R    ++ENSG        
Sbjct: 154 ASRGLNTFIPTPMPDSNTLYSSGGLPLQELKPTLSFAADGLRSRYGIQENSGRLLFPLGE 213

[Close]

BLAST of Lsi05G021380.1 vs. NCBI nr
Match: gi|566158538|ref|XP_002301420.2| (DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa])

HSP 1 Score: 144.1 bits (362), Expect = 2.4e-31
Identity = 75/141 (53.19%), Postives = 89/141 (63.12%), Query Frame = 1


Query: 19  LKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGS 78
           L+ K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGGS
Sbjct: 14  LERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGS 73

Query: 79  RKNRKPPGSVVGGSGSAHHAP---PP---------PAQVYQAHDLNLGFATAEATATTMG 138
           RKN++   S V  S +    P   PP         P   ++  DLNL F   + +     
Sbjct: 74  RKNKRSTSSSVAASAAPSKLPDLNPPNLSHFSSQNPKSAHEGQDLNLAFPAMQDSQALEL 133

Query: 139 MENG-GHGGFGCYIPNLMPYS 147
           + +G    G   +IP  MP S
Sbjct: 134 LRSGIASRGLNSFIPTPMPDS 154

[Close]

BLAST of Lsi05G021380.1 vs. NCBI nr
Match: gi|743827920|ref|XP_011023145.1| (PREDICTED: dof zinc finger protein DOF3.7-like isoform X2 [Populus euphratica])

HSP 1 Score: 142.9 bits (359), Expect = 5.3e-31
Identity = 75/141 (53.19%), Postives = 89/141 (63.12%), Query Frame = 1


Query: 19  LKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGS 78
           L+ K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGGS
Sbjct: 36  LERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGS 95

Query: 79  RKNRKPPGSVVGGSGSAHHAP---PP---------PAQVYQAHDLNLGFATAEATATTMG 138
           RKN++   S V  S +    P   PP         P   ++  DLNL F   + +     
Sbjct: 96  RKNKRSTSSSVAASAAPSKLPDLNPPNLSHFSSQNPKSGHEGQDLNLAFPAMQDSQALEL 155

Query: 139 MENG-GHGGFGCYIPNLMPYS 147
           + +G    G   +IP  MP S
Sbjct: 156 LRSGIASRGLNSFIPTPMPDS 176

The following BLAST results are available for this feature:

BLAST of Lsi05G021380.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DOF25_ARATH	4.2e-28	81.82	Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3	[more]
DOF41_ARATH	7.1e-28	59.63	Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1 PE=2 SV=2	[more]
DOF37_ARATH	5.1e-26	69.51	Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2	[more]
DOF46_ARATH	6.6e-26	73.61	Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2	[more]
PBF_MAIZE	8.7e-26	46.94	Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1	[more]

BLAST of Lsi05G021380.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5U8_CUCSA	7.3e-80	88.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119420 PE=4 SV=1	[more]
B9GR41_POPTR	1.6e-31	53.19	DOF AFFECTING GERMINATION 2 family protein OS=Populus trichocarpa GN=POPTR_0002s...	[more]
U5FT89_POPTR	3.7e-31	53.15	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09640g PE=4 SV=1	[more]
A0A072TM78_MEDTR	4.8e-31	59.35	Dof-type zinc finger DNA-binding family protein OS=Medicago truncatula GN=MTR_8g...	[more]
B9I901_POPTR	1.2e-29	61.26	DOF AFFECTING GERMINATION 2 family protein OS=Populus trichocarpa GN=POPTR_0014s...	[more]

BLAST of Lsi05G021380.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46590.2	2.3e-29	81.82	Dof-type zinc finger DNA-binding family protein	[more]
AT4G00940.1	4.0e-29	59.63	Dof-type zinc finger DNA-binding family protein	[more]
AT3G61850.4	2.9e-27	69.51	Dof-type zinc finger DNA-binding family protein	[more]
AT4G24060.1	3.7e-27	73.61	Dof-type zinc finger DNA-binding family protein	[more]
AT2G37590.1	1.4e-26	62.92	DNA binding with one finger 2.4	[more]

BLAST of Lsi05G021380.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074919\|ref\|XP_008437866.1\|	1.2e-80	86.03	PREDICTED: dof zinc finger protein DOF3.7-like [Cucumis melo]	[more]
gi\|778676830\|ref\|XP_011650669.1\|	1.0e-79	88.00	PREDICTED: dof zinc finger protein DOF3.7 [Cucumis sativus]	[more]
gi\|743790303\|ref\|XP_011038563.1\|	4.3e-33	42.65	PREDICTED: dof zinc finger protein DOF3.7-like isoform X4 [Populus euphratica]	[more]
gi\|566158538\|ref\|XP_002301420.2\|	2.4e-31	53.19	DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]	[more]
gi\|743827920\|ref\|XP_011023145.1\|	5.3e-31	53.19	PREDICTED: dof zinc finger protein DOF3.7-like isoform X2 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR003851	Znf_Dof

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi05G021380	Lsi05G021380	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G021380.1.CDS.1	Lsi05G021380.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi05G021380.1	Lsi05G021380.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PRODOM	PD007478		coord: 24..83 score: 4.0
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 27..83 score: 2.8
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 31..67 scor
IPR003851	Zinc finger, Dof-type	PROFILE	PS50884	ZF_DOF_2	coord: 29..83 score: 28
None	No IPR available	PANTHER	PTHR31992	FAMILY NOT NAMED	coord: 25..171 score: 9.0