Lsi10G006180.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G006180.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Orf101b
Location	chr10 : 8692994 .. 8693900 (-)
Sequence length	633

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATTGGTTTAGGTAGGGCGGCCGACCTACTACGGACACCTGTAGGGATTAGTGCGTGAGGCCACGATCCACAAACTGACGCATGGGACTCACCCTTTACTTGGGAATGAAGAGGGGAAACATAGCATGTCACAAGAGCAAGGCGAGGTTTGGAACCCTACTGCGGGAGGGACGCCTCGCGAGCCGGGCTTCTAGAGATGAGGCCTTTTGGCGAAGCCAAGTCAATTTTGGGCCACCAAACCCTGCAACTGATGAGAAGGCCCTATGGAGTAAAGGGAAGCATGTACATTGTCACACTCCTTGCCTTCCAAAGGTGCCTAGAGGACGGGCCAGACGCAGCAGAGCGACGACCCGGGAGCGGATTCCCCACTGGTAGGGGGACAGAAGACGGCCATCTCAAGGCACAGCACGACCTACAGGCAACACCGGCGAGACCTGGGAAGGCAACCCGATTGGGAGTCAGAGGATCCATAGTACCTGCAGCCCCACGGACTTCATATTCATCATTTTAGAAAGCGGGGAGAAGGGATCTCTTTTCTGCAACGGAAAAAAAATGGAGCTGATTTGACTCGGCACAACCTAACGATGCATCCAATACCAATGATCTGTGCCTAGAATGCATTGCTAGATCTCTGCTCATTAAAGCTATACAGGCAACAACAAAGGCGGTTTGACCGGGGGCTTCCCTTTCATTACTTCTTTCACGACGAGGGAACCGCGTCCGCATCCGCATCAGTTGAAGTGGTGGAACGCCCTCCTGAGTCAAAGAGAGAGCTTCCGCACCTCTCTCCAAGAGATACGATTCAGTATCAGAATCGGCTGAAGGAGAGTGAAGAGGCGGCAACTCTCCTAGCCCAGCCTACGGGGAAGCCTCTTCTTTCTGGTCTACATCAAGTGCATTGA

mRNA sequence

ATGATGATTGGTTTAGGTAGGGCGGCCGACCTACTACGGACACCTGTAGGGATTAGTGCGCGAGGTTTGGAACCCTACTGCGGGAGGGACGCCTCGCGAGCCGGGCTTCTAGAGATGAGGCCTTTTGGCGAAGCCAAGTCAATTTTGGGCCACCAAACCCTGCAACTGATGAGAAGGCCCTATGGAGTAAAGGGAAGCATGTACATTGTCACACTCCTTGCCTTCCAAAGGTGCCTAGAGGACGGGCCAGACGCAGCAGAGCGACGACCCGGGAGCGGATTCCCCACTGGTAGGGGGACAGAAGACGGCCATCTCAAGGCACAGCACGACCTACAGGCAACACCGGCGAGACCTGGGAAGGCAACCCGATTGGGACTATACAGGCAACAACAAAGGCGGTTTGACCGGGGGCTTCCCTTTCATTACTTCTTTCACGACGAGGGAACCGCGTCCGCATCCGCATCAGTTGAAGTGGTGGAACGCCCTCCTGAGTCAAAGAGAGAGCTTCCGCACCTCTCTCCAAGAGATACGATTCAGTATCAGAATCGGCTGAAGGAGAGTGAAGAGGCGGCAACTCTCCTAGCCCAGCCTACGGGGAAGCCTCTTCTTTCTGGTCTACATCAAGTGCATTGA

Coding sequence (CDS)

ATGATGATTGGTTTAGGTAGGGCGGCCGACCTACTACGGACACCTGTAGGGATTAGTGCGCGAGGTTTGGAACCCTACTGCGGGAGGGACGCCTCGCGAGCCGGGCTTCTAGAGATGAGGCCTTTTGGCGAAGCCAAGTCAATTTTGGGCCACCAAACCCTGCAACTGATGAGAAGGCCCTATGGAGTAAAGGGAAGCATGTACATTGTCACACTCCTTGCCTTCCAAAGGTGCCTAGAGGACGGGCCAGACGCAGCAGAGCGACGACCCGGGAGCGGATTCCCCACTGGTAGGGGGACAGAAGACGGCCATCTCAAGGCACAGCACGACCTACAGGCAACACCGGCGAGACCTGGGAAGGCAACCCGATTGGGACTATACAGGCAACAACAAAGGCGGTTTGACCGGGGGCTTCCCTTTCATTACTTCTTTCACGACGAGGGAACCGCGTCCGCATCCGCATCAGTTGAAGTGGTGGAACGCCCTCCTGAGTCAAAGAGAGAGCTTCCGCACCTCTCTCCAAGAGATACGATTCAGTATCAGAATCGGCTGAAGGAGAGTGAAGAGGCGGCAACTCTCCTAGCCCAGCCTACGGGGAAGCCTCTTCTTTCTGGTCTACATCAAGTGCATTGA

Protein sequence

MMIGLGRAADLLRTPVGISARGLEPYCGRDASRAGLLEMRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCLEDGPDAAERRPGSGFPTGRGTEDGHLKAQHDLQATPARPGKATRLGLYRQQQRRFDRGLPFHYFFHDEGTASASASVEVVERPPESKRELPHLSPRDTIQYQNRLKESEEAATLLAQPTGKPLLSGLHQVH

Homology

[Close]

BLAST of Lsi10G006180.1 vs. TrEMBL
Match: B6VJZ2_VITVI (ORF145 OS=Vitis vinifera GN=orf145 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.2e-47
Identity = 95/107 (88.79%), Postives = 99/107 (92.52%), Query Frame = 1


Query: 20  ARGLEPYCGRDASRAGLLEMRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCL 79
           AR L PYC RDASRAGLLEMRPFGEAKSI GHQTLQLMRRPYGVKGS+Y+VTL AFQRCL
Sbjct: 21  ARCLTPYCERDASRAGLLEMRPFGEAKSISGHQTLQLMRRPYGVKGSVYVVTLPAFQRCL 80

Query: 80  EDGPDAAERRPGSGFPTGRGTEDGHLKAQHDLQATPARPGKATRLGL 127
           EDGPDAAERRPGSGFPTGRGT DGHL+A HDLQA PARPGKATRLG+
Sbjct: 81  EDGPDAAERRPGSGFPTGRGTGDGHLEAHHDLQARPARPGKATRLGV 127

[Close]

BLAST of Lsi10G006180.1 vs. TrEMBL
Match: F6HWW2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0854g00010 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.6e-44
Identity = 90/103 (87.38%), Postives = 93/103 (90.29%), Query Frame = 1


Query: 20  ARGLEPYCGRDASRAGLLEMRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCL 79
           AR L PYC RDASRA LLEMRPFGEAKSI GHQTLQLMRRPYGVKGS+Y+VTL AFQRCL
Sbjct: 21  ARCLTPYCERDASRARLLEMRPFGEAKSISGHQTLQLMRRPYGVKGSVYVVTLPAFQRCL 80

Query: 80  EDGPDAAERRPGSGFPTGRGTEDGHLKAQHDLQATPARPGKAT 123
           EDGPDAAERRPGSGFPT RGT DGHL+A HDLQA PARPGKAT
Sbjct: 81  EDGPDAAERRPGSGFPTSRGTGDGHLEAHHDLQARPARPGKAT 123

[Close]

BLAST of Lsi10G006180.1 vs. TrEMBL
Match: Q5M9X9_TOBAC (Uncharacterized protein OS=Nicotiana tabacum GN=orf147 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 8.9e-40
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 39  MRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCLEDGPDAAERRPGSGFPTGR 98
           MRPFGEAKSI GHQTLQLMRRPYGVKGS+Y+VTL AFQRCLEDGPDAAERRPGSGFPTGR
Sbjct: 1   MRPFGEAKSISGHQTLQLMRRPYGVKGSVYVVTLPAFQRCLEDGPDAAERRPGSGFPTGR 60

Query: 99  GTEDGHLKAQHDLQATPARPGKATRLGL 127
           GT DGHLKA HDLQATPARPGKATRLG+
Sbjct: 61  GTGDGHLKAHHDLQATPARPGKATRLGV 88

[Close]

BLAST of Lsi10G006180.1 vs. TrEMBL
Match: G2XLP6_BETMA (Uncharacterized protein OS=Beta macrocarpa GN=orf122b PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-39
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 39  MRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCLEDGPDAAERRPGSGFPTGR 98
           MRPFGEAKSI GHQTLQLMRRPYG+KGS+Y+VTL AFQRCLEDGPDAAERRPGSGFPTGR
Sbjct: 1   MRPFGEAKSISGHQTLQLMRRPYGIKGSVYVVTLPAFQRCLEDGPDAAERRPGSGFPTGR 60

Query: 99  GTEDGHLKAQHDLQATPARPGKATRLGL 127
           GT DGHLKA HDLQATPARPGKATRLG+
Sbjct: 61  GTGDGHLKAHHDLQATPARPGKATRLGV 88

[Close]

BLAST of Lsi10G006180.1 vs. TrEMBL
Match: Q5U6B3_BETVU (Orf122b protein OS=Beta vulgaris subsp. vulgaris GN=orf122b PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-39
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 39  MRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCLEDGPDAAERRPGSGFPTGR 98
           MRPFGEAKSI GHQTLQLMRRPYG+KGS+Y+VTL AFQRCLEDGPDAAERRPGSGFPTGR
Sbjct: 1   MRPFGEAKSISGHQTLQLMRRPYGIKGSVYVVTLPAFQRCLEDGPDAAERRPGSGFPTGR 60

Query: 99  GTEDGHLKAQHDLQATPARPGKATRLGL 127
           GT DGHLKA HDLQATPARPGKATRLG+
Sbjct: 61  GTGDGHLKAHHDLQATPARPGKATRLGV 88

[Close]

BLAST of Lsi10G006180.1 vs. NCBI nr
Match: gi|296083514|emb|CBI14783.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 198.0 bits (502), Expect = 1.7e-47
Identity = 95/107 (88.79%), Postives = 99/107 (92.52%), Query Frame = 1


Query: 20  ARGLEPYCGRDASRAGLLEMRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCL 79
           AR L PYC RDASRAGLLEMRPFGEAKSI GHQTLQLMRRPYGVKGS+Y+VTL AFQRCL
Sbjct: 21  ARCLTPYCERDASRAGLLEMRPFGEAKSISGHQTLQLMRRPYGVKGSVYVVTLPAFQRCL 80

Query: 80  EDGPDAAERRPGSGFPTGRGTEDGHLKAQHDLQATPARPGKATRLGL 127
           EDGPDAAERRPGSGFPTGRGT DGHL+A HDLQA PARPGKATRLG+
Sbjct: 81  EDGPDAAERRPGSGFPTGRGTGDGHLEAHHDLQARPARPGKATRLGV 127

[Close]

BLAST of Lsi10G006180.1 vs. NCBI nr
Match: gi|224365683|ref|YP_002608410.1| (orf145 [Vitis vinifera])

HSP 1 Score: 198.0 bits (502), Expect = 1.7e-47
Identity = 95/107 (88.79%), Postives = 99/107 (92.52%), Query Frame = 1


Query: 20  ARGLEPYCGRDASRAGLLEMRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCL 79
           AR L PYC RDASRAGLLEMRPFGEAKSI GHQTLQLMRRPYGVKGS+Y+VTL AFQRCL
Sbjct: 21  ARCLTPYCERDASRAGLLEMRPFGEAKSISGHQTLQLMRRPYGVKGSVYVVTLPAFQRCL 80

Query: 80  EDGPDAAERRPGSGFPTGRGTEDGHLKAQHDLQATPARPGKATRLGL 127
           EDGPDAAERRPGSGFPTGRGT DGHL+A HDLQA PARPGKATRLG+
Sbjct: 81  EDGPDAAERRPGSGFPTGRGTGDGHLEAHHDLQARPARPGKATRLGV 127

[Close]

BLAST of Lsi10G006180.1 vs. NCBI nr
Match: gi|57013962|ref|YP_173434.1| (hypothetical protein NitaMp095 [Nicotiana tabacum])

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 39  MRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCLEDGPDAAERRPGSGFPTGR 98
           MRPFGEAKSI GHQTLQLMRRPYGVKGS+Y+VTL AFQRCLEDGPDAAERRPGSGFPTGR
Sbjct: 1   MRPFGEAKSISGHQTLQLMRRPYGVKGSVYVVTLPAFQRCLEDGPDAAERRPGSGFPTGR 60

Query: 99  GTEDGHLKAQHDLQATPARPGKATRLGL 127
           GT DGHLKA HDLQATPARPGKATRLG+
Sbjct: 61  GTGDGHLKAHHDLQATPARPGKATRLGV 88

[Close]

BLAST of Lsi10G006180.1 vs. NCBI nr
Match: gi|323435051|ref|YP_004222269.1| (hypothetical protein BevumaM_p030 (mitochondrion) [Beta vulgaris subsp. maritima])

HSP 1 Score: 171.4 bits (433), Expect = 1.7e-39
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 39  MRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCLEDGPDAAERRPGSGFPTGR 98
           MRPFGEAKSI GHQTLQLMRRPYG+KGS+Y+VTL AFQRCLEDGPDAAERRPGSGFPTGR
Sbjct: 1   MRPFGEAKSISGHQTLQLMRRPYGIKGSVYVVTLPAFQRCLEDGPDAAERRPGSGFPTGR 60

Query: 99  GTEDGHLKAQHDLQATPARPGKATRLGL 127
           GT DGHLKA HDLQATPARPGKATRLG+
Sbjct: 61  GTGDGHLKAHHDLQATPARPGKATRLGV 88

[Close]

BLAST of Lsi10G006180.1 vs. NCBI nr
Match: gi|675895171|ref|YP_009049646.1| (hypothetical protein (mitochondrion) [Capsicum annuum])

HSP 1 Score: 167.9 bits (424), Expect = 1.9e-38
Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 1


Query: 39  MRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCLEDGPDAAERRPGSGFPTGR 98
           MR FGEAKSI GHQTLQLMRRPYGVKGS+Y+VTL AFQRCLEDGPDAAERRPGSGFPTGR
Sbjct: 1   MRLFGEAKSISGHQTLQLMRRPYGVKGSVYVVTLPAFQRCLEDGPDAAERRPGSGFPTGR 60

Query: 99  GTEDGHLKAQHDLQATPARPGKATRLGL 127
           GT DGHLKA HDLQATPARPGKATRLG+
Sbjct: 61  GTGDGHLKAHHDLQATPARPGKATRLGV 88

The following BLAST results are available for this feature:

BLAST of Lsi10G006180.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G006180.1 vs. TrEMBL


Match Name	E-value	Identity	Description
B6VJZ2_VITVI	1.2e-47	88.79	ORF145 OS=Vitis vinifera GN=orf145 PE=4 SV=1	[more]
F6HWW2_VITVI	4.6e-44	87.38	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0854g00010 PE=4 SV=...	[more]
Q5M9X9_TOBAC	8.9e-40	92.05	Uncharacterized protein OS=Nicotiana tabacum GN=orf147 PE=4 SV=1	[more]
G2XLP6_BETMA	1.2e-39	90.91	Uncharacterized protein OS=Beta macrocarpa GN=orf122b PE=4 SV=1	[more]
Q5U6B3_BETVU	1.2e-39	90.91	Orf122b protein OS=Beta vulgaris subsp. vulgaris GN=orf122b PE=4 SV=1	[more]

BLAST of Lsi10G006180.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi10G006180.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|296083514\|emb\|CBI14783.3\|	1.7e-47	88.79	unnamed protein product [Vitis vinifera]	[more]
gi\|224365683\|ref\|YP_002608410.1\|	1.7e-47	88.79	orf145 [Vitis vinifera]	[more]
gi\|57013962\|ref\|YP_173434.1\|	1.3e-39	92.05	hypothetical protein NitaMp095 [Nicotiana tabacum]	[more]
gi\|323435051\|ref\|YP_004222269.1\|	1.7e-39	90.91	hypothetical protein BevumaM_p030 (mitochondrion) [Beta vulgaris subsp. maritima...	[more]
gi\|675895171\|ref\|YP_009049646.1\|	1.9e-38	90.91	hypothetical protein (mitochondrion) [Capsicum annuum]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi10G006180	Lsi10G006180	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G006180.1.CDS.3	Lsi10G006180.1.CDS.3	CDS
Lsi10G006180.1.CDS.2	Lsi10G006180.1.CDS.2	CDS
Lsi10G006180.1.CDS.1	Lsi10G006180.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi10G006180.1	Lsi10G006180.1-protein	polypeptide