Lsi10G006180 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G006180
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Orf101b
Location	chr10 : 8692994 .. 8693900 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATTGGTTTAGGTAGGGCGGCCGACCTACTACGGACACCTGTAGGGATTAGTGCGTGAGGCCACGATCCACAAACTGACGCATGGGACTCACCCTTTACTTGGGAATGAAGAGGGGAAACATAGCATGTCACAAGAGCAAGGCGAGGTTTGGAACCCTACTGCGGGAGGGACGCCTCGCGAGCCGGGCTTCTAGAGATGAGGCCTTTTGGCGAAGCCAAGTCAATTTTGGGCCACCAAACCCTGCAACTGATGAGAAGGCCCTATGGAGTAAAGGGAAGCATGTACATTGTCACACTCCTTGCCTTCCAAAGGTGCCTAGAGGACGGGCCAGACGCAGCAGAGCGACGACCCGGGAGCGGATTCCCCACTGGTAGGGGGACAGAAGACGGCCATCTCAAGGCACAGCACGACCTACAGGCAACACCGGCGAGACCTGGGAAGGCAACCCGATTGGGAGTCAGAGGATCCATAGTACCTGCAGCCCCACGGACTTCATATTCATCATTTTAGAAAGCGGGGAGAAGGGATCTCTTTTCTGCAACGGAAAAAAAATGGAGCTGATTTGACTCGGCACAACCTAACGATGCATCCAATACCAATGATCTGTGCCTAGAATGCATTGCTAGATCTCTGCTCATTAAAGCTATACAGGCAACAACAAAGGCGGTTTGACCGGGGGCTTCCCTTTCATTACTTCTTTCACGACGAGGGAACCGCGTCCGCATCCGCATCAGTTGAAGTGGTGGAACGCCCTCCTGAGTCAAAGAGAGAGCTTCCGCACCTCTCTCCAAGAGATACGATTCAGTATCAGAATCGGCTGAAGGAGAGTGAAGAGGCGGCAACTCTCCTAGCCCAGCCTACGGGGAAGCCTCTTCTTTCTGGTCTACATCAAGTGCATTGA

mRNA sequence

ATGATGATTGGTTTAGGTAGGGCGGCCGACCTACTACGGACACCTGTAGGGATTAGTGCGCGAGGTTTGGAACCCTACTGCGGGAGGGACGCCTCGCGAGCCGGGCTTCTAGAGATGAGGCCTTTTGGCGAAGCCAAGTCAATTTTGGGCCACCAAACCCTGCAACTGATGAGAAGGCCCTATGGAGTAAAGGGAAGCATGTACATTGTCACACTCCTTGCCTTCCAAAGGTGCCTAGAGGACGGGCCAGACGCAGCAGAGCGACGACCCGGGAGCGGATTCCCCACTGGTAGGGGGACAGAAGACGGCCATCTCAAGGCACAGCACGACCTACAGGCAACACCGGCGAGACCTGGGAAGGCAACCCGATTGGGACTATACAGGCAACAACAAAGGCGGTTTGACCGGGGGCTTCCCTTTCATTACTTCTTTCACGACGAGGGAACCGCGTCCGCATCCGCATCAGTTGAAGTGGTGGAACGCCCTCCTGAGTCAAAGAGAGAGCTTCCGCACCTCTCTCCAAGAGATACGATTCAGTATCAGAATCGGCTGAAGGAGAGTGAAGAGGCGGCAACTCTCCTAGCCCAGCCTACGGGGAAGCCTCTTCTTTCTGGTCTACATCAAGTGCATTGA

Coding sequence (CDS)

ATGATGATTGGTTTAGGTAGGGCGGCCGACCTACTACGGACACCTGTAGGGATTAGTGCGCGAGGTTTGGAACCCTACTGCGGGAGGGACGCCTCGCGAGCCGGGCTTCTAGAGATGAGGCCTTTTGGCGAAGCCAAGTCAATTTTGGGCCACCAAACCCTGCAACTGATGAGAAGGCCCTATGGAGTAAAGGGAAGCATGTACATTGTCACACTCCTTGCCTTCCAAAGGTGCCTAGAGGACGGGCCAGACGCAGCAGAGCGACGACCCGGGAGCGGATTCCCCACTGGTAGGGGGACAGAAGACGGCCATCTCAAGGCACAGCACGACCTACAGGCAACACCGGCGAGACCTGGGAAGGCAACCCGATTGGGACTATACAGGCAACAACAAAGGCGGTTTGACCGGGGGCTTCCCTTTCATTACTTCTTTCACGACGAGGGAACCGCGTCCGCATCCGCATCAGTTGAAGTGGTGGAACGCCCTCCTGAGTCAAAGAGAGAGCTTCCGCACCTCTCTCCAAGAGATACGATTCAGTATCAGAATCGGCTGAAGGAGAGTGAAGAGGCGGCAACTCTCCTAGCCCAGCCTACGGGGAAGCCTCTTCTTTCTGGTCTACATCAAGTGCATTGA

Protein sequence

MMIGLGRAADLLRTPVGISARGLEPYCGRDASRAGLLEMRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCLEDGPDAAERRPGSGFPTGRGTEDGHLKAQHDLQATPARPGKATRLGLYRQQQRRFDRGLPFHYFFHDEGTASASASVEVVERPPESKRELPHLSPRDTIQYQNRLKESEEAATLLAQPTGKPLLSGLHQVH

Homology

[Close]

BLAST of Lsi10G006180 vs. TrEMBL
Match: B6VJZ2_VITVI (ORF145 OS=Vitis vinifera GN=orf145 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.2e-47
Identity = 95/107 (88.79%), Postives = 99/107 (92.52%), Query Frame = 1


Query: 20  ARGLEPYCGRDASRAGLLEMRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCL 79
           AR L PYC RDASRAGLLEMRPFGEAKSI GHQTLQLMRRPYGVKGS+Y+VTL AFQRCL
Sbjct: 21  ARCLTPYCERDASRAGLLEMRPFGEAKSISGHQTLQLMRRPYGVKGSVYVVTLPAFQRCL 80

Query: 80  EDGPDAAERRPGSGFPTGRGTEDGHLKAQHDLQATPARPGKATRLGL 127
           EDGPDAAERRPGSGFPTGRGT DGHL+A HDLQA PARPGKATRLG+
Sbjct: 81  EDGPDAAERRPGSGFPTGRGTGDGHLEAHHDLQARPARPGKATRLGV 127

[Close]

BLAST of Lsi10G006180 vs. TrEMBL
Match: F6HWW2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0854g00010 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.6e-44
Identity = 90/103 (87.38%), Postives = 93/103 (90.29%), Query Frame = 1


Query: 20  ARGLEPYCGRDASRAGLLEMRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCL 79
           AR L PYC RDASRA LLEMRPFGEAKSI GHQTLQLMRRPYGVKGS+Y+VTL AFQRCL
Sbjct: 21  ARCLTPYCERDASRARLLEMRPFGEAKSISGHQTLQLMRRPYGVKGSVYVVTLPAFQRCL 80

Query: 80  EDGPDAAERRPGSGFPTGRGTEDGHLKAQHDLQATPARPGKAT 123
           EDGPDAAERRPGSGFPT RGT DGHL+A HDLQA PARPGKAT
Sbjct: 81  EDGPDAAERRPGSGFPTSRGTGDGHLEAHHDLQARPARPGKAT 123

[Close]

BLAST of Lsi10G006180 vs. TrEMBL
Match: Q5M9X9_TOBAC (Uncharacterized protein OS=Nicotiana tabacum GN=orf147 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 8.9e-40
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 39  MRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCLEDGPDAAERRPGSGFPTGR 98
           MRPFGEAKSI GHQTLQLMRRPYGVKGS+Y+VTL AFQRCLEDGPDAAERRPGSGFPTGR
Sbjct: 1   MRPFGEAKSISGHQTLQLMRRPYGVKGSVYVVTLPAFQRCLEDGPDAAERRPGSGFPTGR 60

Query: 99  GTEDGHLKAQHDLQATPARPGKATRLGL 127
           GT DGHLKA HDLQATPARPGKATRLG+
Sbjct: 61  GTGDGHLKAHHDLQATPARPGKATRLGV 88

[Close]

BLAST of Lsi10G006180 vs. TrEMBL
Match: G2XLP6_BETMA (Uncharacterized protein OS=Beta macrocarpa GN=orf122b PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-39
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 39  MRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCLEDGPDAAERRPGSGFPTGR 98
           MRPFGEAKSI GHQTLQLMRRPYG+KGS+Y+VTL AFQRCLEDGPDAAERRPGSGFPTGR
Sbjct: 1   MRPFGEAKSISGHQTLQLMRRPYGIKGSVYVVTLPAFQRCLEDGPDAAERRPGSGFPTGR 60

Query: 99  GTEDGHLKAQHDLQATPARPGKATRLGL 127
           GT DGHLKA HDLQATPARPGKATRLG+
Sbjct: 61  GTGDGHLKAHHDLQATPARPGKATRLGV 88

[Close]

BLAST of Lsi10G006180 vs. TrEMBL
Match: Q5U6B3_BETVU (Orf122b protein OS=Beta vulgaris subsp. vulgaris GN=orf122b PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-39
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 39  MRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCLEDGPDAAERRPGSGFPTGR 98
           MRPFGEAKSI GHQTLQLMRRPYG+KGS+Y+VTL AFQRCLEDGPDAAERRPGSGFPTGR
Sbjct: 1   MRPFGEAKSISGHQTLQLMRRPYGIKGSVYVVTLPAFQRCLEDGPDAAERRPGSGFPTGR 60

Query: 99  GTEDGHLKAQHDLQATPARPGKATRLGL 127
           GT DGHLKA HDLQATPARPGKATRLG+
Sbjct: 61  GTGDGHLKAHHDLQATPARPGKATRLGV 88

[Close]

BLAST of Lsi10G006180 vs. NCBI nr
Match: gi|296083514|emb|CBI14783.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 198.0 bits (502), Expect = 1.7e-47
Identity = 95/107 (88.79%), Postives = 99/107 (92.52%), Query Frame = 1


Query: 20  ARGLEPYCGRDASRAGLLEMRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCL 79
           AR L PYC RDASRAGLLEMRPFGEAKSI GHQTLQLMRRPYGVKGS+Y+VTL AFQRCL
Sbjct: 21  ARCLTPYCERDASRAGLLEMRPFGEAKSISGHQTLQLMRRPYGVKGSVYVVTLPAFQRCL 80

Query: 80  EDGPDAAERRPGSGFPTGRGTEDGHLKAQHDLQATPARPGKATRLGL 127
           EDGPDAAERRPGSGFPTGRGT DGHL+A HDLQA PARPGKATRLG+
Sbjct: 81  EDGPDAAERRPGSGFPTGRGTGDGHLEAHHDLQARPARPGKATRLGV 127

[Close]

BLAST of Lsi10G006180 vs. NCBI nr
Match: gi|224365683|ref|YP_002608410.1| (orf145 [Vitis vinifera])

HSP 1 Score: 198.0 bits (502), Expect = 1.7e-47
Identity = 95/107 (88.79%), Postives = 99/107 (92.52%), Query Frame = 1


Query: 20  ARGLEPYCGRDASRAGLLEMRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCL 79
           AR L PYC RDASRAGLLEMRPFGEAKSI GHQTLQLMRRPYGVKGS+Y+VTL AFQRCL
Sbjct: 21  ARCLTPYCERDASRAGLLEMRPFGEAKSISGHQTLQLMRRPYGVKGSVYVVTLPAFQRCL 80

Query: 80  EDGPDAAERRPGSGFPTGRGTEDGHLKAQHDLQATPARPGKATRLGL 127
           EDGPDAAERRPGSGFPTGRGT DGHL+A HDLQA PARPGKATRLG+
Sbjct: 81  EDGPDAAERRPGSGFPTGRGTGDGHLEAHHDLQARPARPGKATRLGV 127

[Close]

BLAST of Lsi10G006180 vs. NCBI nr
Match: gi|57013962|ref|YP_173434.1| (hypothetical protein NitaMp095 [Nicotiana tabacum])

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 39  MRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCLEDGPDAAERRPGSGFPTGR 98
           MRPFGEAKSI GHQTLQLMRRPYGVKGS+Y+VTL AFQRCLEDGPDAAERRPGSGFPTGR
Sbjct: 1   MRPFGEAKSISGHQTLQLMRRPYGVKGSVYVVTLPAFQRCLEDGPDAAERRPGSGFPTGR 60

Query: 99  GTEDGHLKAQHDLQATPARPGKATRLGL 127
           GT DGHLKA HDLQATPARPGKATRLG+
Sbjct: 61  GTGDGHLKAHHDLQATPARPGKATRLGV 88

[Close]

BLAST of Lsi10G006180 vs. NCBI nr
Match: gi|323435051|ref|YP_004222269.1| (hypothetical protein BevumaM_p030 (mitochondrion) [Beta vulgaris subsp. maritima])

HSP 1 Score: 171.4 bits (433), Expect = 1.7e-39
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 39  MRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCLEDGPDAAERRPGSGFPTGR 98
           MRPFGEAKSI GHQTLQLMRRPYG+KGS+Y+VTL AFQRCLEDGPDAAERRPGSGFPTGR
Sbjct: 1   MRPFGEAKSISGHQTLQLMRRPYGIKGSVYVVTLPAFQRCLEDGPDAAERRPGSGFPTGR 60

Query: 99  GTEDGHLKAQHDLQATPARPGKATRLGL 127
           GT DGHLKA HDLQATPARPGKATRLG+
Sbjct: 61  GTGDGHLKAHHDLQATPARPGKATRLGV 88

[Close]

BLAST of Lsi10G006180 vs. NCBI nr
Match: gi|675895171|ref|YP_009049646.1| (hypothetical protein (mitochondrion) [Capsicum annuum])

HSP 1 Score: 167.9 bits (424), Expect = 1.9e-38
Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 1


Query: 39  MRPFGEAKSILGHQTLQLMRRPYGVKGSMYIVTLLAFQRCLEDGPDAAERRPGSGFPTGR 98
           MR FGEAKSI GHQTLQLMRRPYGVKGS+Y+VTL AFQRCLEDGPDAAERRPGSGFPTGR
Sbjct: 1   MRLFGEAKSISGHQTLQLMRRPYGVKGSVYVVTLPAFQRCLEDGPDAAERRPGSGFPTGR 60

Query: 99  GTEDGHLKAQHDLQATPARPGKATRLGL 127
           GT DGHLKA HDLQATPARPGKATRLG+
Sbjct: 61  GTGDGHLKAHHDLQATPARPGKATRLGV 88

The following BLAST results are available for this feature:

BLAST of Lsi10G006180 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G006180 vs. TrEMBL


Match Name	E-value	Identity	Description
B6VJZ2_VITVI	1.2e-47	88.79	ORF145 OS=Vitis vinifera GN=orf145 PE=4 SV=1	[more]
F6HWW2_VITVI	4.6e-44	87.38	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0854g00010 PE=4 SV=...	[more]
Q5M9X9_TOBAC	8.9e-40	92.05	Uncharacterized protein OS=Nicotiana tabacum GN=orf147 PE=4 SV=1	[more]
G2XLP6_BETMA	1.2e-39	90.91	Uncharacterized protein OS=Beta macrocarpa GN=orf122b PE=4 SV=1	[more]
Q5U6B3_BETVU	1.2e-39	90.91	Orf122b protein OS=Beta vulgaris subsp. vulgaris GN=orf122b PE=4 SV=1	[more]

BLAST of Lsi10G006180 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi10G006180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|296083514\|emb\|CBI14783.3\|	1.7e-47	88.79	unnamed protein product [Vitis vinifera]	[more]
gi\|224365683\|ref\|YP_002608410.1\|	1.7e-47	88.79	orf145 [Vitis vinifera]	[more]
gi\|57013962\|ref\|YP_173434.1\|	1.3e-39	92.05	hypothetical protein NitaMp095 [Nicotiana tabacum]	[more]
gi\|323435051\|ref\|YP_004222269.1\|	1.7e-39	90.91	hypothetical protein BevumaM_p030 (mitochondrion) [Beta vulgaris subsp. maritima...	[more]
gi\|675895171\|ref\|YP_009049646.1\|	1.9e-38	90.91	hypothetical protein (mitochondrion) [Capsicum annuum]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G006180.1	Lsi10G006180.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G006180	Cucumber (Gy14) v1	cgylsiB594
Lsi10G006180	Cucurbita maxima (Rimu)	cmalsiB508
Lsi10G006180	Wild cucumber (PI 183967)	cpilsiB091
Lsi10G006180	Cucumber (Chinese Long) v2	culsiB093
Lsi10G006180	Melon (DHL92) v3.5.1	lsimeB054
Lsi10G006180	Cucumber (Gy14) v2	cgyblsiB086