Lsi10G002230.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G002230.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr10 : 3573837 .. 3574571 (+)
Sequence length	650

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAAACACAAAACAAAACGAAATCAAACTGACAGCAGGCAGAGAGAGAGAAAGAGAGAGAAGAAATAAAAAAGAAAGGGTTGAGGTAAGATTACTGGTGGGATGATGGAAGAACCTATGAGAAATGGACTCGAAGCTCTTCTGAATAGGGAGTACAAGATCAGGTGGAACAGGCAGACCTGCCATCATATATTTGAAGATCAGAGCCTGATGCTCCAGCTCCTGCCACTGTAACACTGTGAAAGGTGACCTATTCATCCCCATCATTCCACTTGCTGTTGCTGCTGCTGCTACTGTCCTACTCCCATCCTCACTACCACCGCCACTGTTGTTCATAATAACCACCACCAGAGAAAGAGAGAGAGTTTATTCCTCCGCCTCCGCCTCCACCGCCGACCACCACCAGTTTCTCTAGTAAGTAATCCTGAAAACCCAGAACCCCTTTTAGCTAAAACACCCAGAAATCTTCAAACATAATCTGAGACAGAGAAGAAAATCATGGGACATAGATCAGCCTCTGTCTCCACCATCTGGATTGCTCTCACTGTCACTCTCTGTAGTGTTTGTTTTTAGTGTCCGAAGGTTTGTGTGGGTAAAGGGGGGGCAGTATCTGTATCTGTGGAGGAACCGAAGGAGGCCAAGTTTGGTCTCATTTTTATTTTTGGGTATTTGGGATTTTGGGTATTGGATATTGGAGGATTTAGCTTTAAAAGATTAGCTCTTTTTGCTTTTAGG

mRNA sequence

ATCAAACACAAAACAAAACGAAATCAAACTGACAGCAGGCAGAGAGAGAGAAAGAGAGAGAAGAAATAAAAAAGAAAGGGTTGAGGTAAGATTACTGGTGGGATGATGGAAGAACCTATGAGAAATGGACTCGAAGCTCTTCTGAATAGGGAGTACAAGATCAGGTGGAACAGGCAGACCTGCCATCATATATTTGAAGATCAGAGCCTGATGCTCCAGCTCCTGCCACTGTAACACTGTGAAAGGTGACCTATTCATCCCCATCATTCCACTTGCTGTTGCTGCTGCTGCTACTGTCCTACTCCCATCCTCACTACCACCGCCACTGTTGTTCATAATAACCACCACCAGAGAAAGAGAGAGAGTTTATTCCTCCGCCTCCGCCTCCACCGCCGACCACCACCAGTTTCTCTAAGAAGAAAATCATGGGACATAGATCAGCCTCTGTCTCCACCATCTGGATTGCTCTCACTGTCACTCTCTGTAGTTGTCCGAAGGTTTGTGTGGGTAAAGGGGGGGCAGTATCTGTATCTGTGGAGGAACCGAAGGAGGCCAAGTTTGGTCTCATTTTTATTTTTGGGTATTTGGGATTTTGGGTATTGGATATTGGAGGATTTAGCTTTAAAAGATTAGCTCTTTTTGCTTTTAGG

Coding sequence (CDS)

ATGGGACATAGATCAGCCTCTGTCTCCACCATCTGGATTGCTCTCACTGTCACTCTCTGTAGTTGTCCGAAGGTTTGTGTGGGTAAAGGGGGGGCAGTATCTGTATCTGTGGAGGAACCGAAGGAGGCCAAGTTTGGTCTCATTTTTATTTTTGGGTATTTGGGATTTTGGGTATTGGATATTGGAGGATTTAGCTTTAAAAGATTAGCTCTTTTTGCTTTTAGG

Protein sequence

MGHRSASVSTIWIALTVTLCSCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFWVLDIGGFSFKRLALFAFR

Homology

[Close]

BLAST of Lsi10G002230.1 vs. TrEMBL
Match: A0A0A0LTL4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432240 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-24
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 1  MGHRSASVSTIWIALTVTLCSCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGF---- 60
          MGHRSASVSTIWIALT     CPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGF    
Sbjct: 1  MGHRSASVSTIWIALT-----CPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILG 60

Query: 61 -WVLDIGGFSFKRLALFAF 75
           WVLDIGGF  K+++ F F
Sbjct: 61 IWVLDIGGFGIKKISSFCF 74

[Close]

BLAST of Lsi10G002230.1 vs. NCBI nr
Match: gi|700208237|gb|KGN63356.1| (hypothetical protein Csa_2G432240 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-24
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 1  MGHRSASVSTIWIALTVTLCSCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGF---- 60
          MGHRSASVSTIWIALT     CPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGF    
Sbjct: 1  MGHRSASVSTIWIALT-----CPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILG 60

Query: 61 -WVLDIGGFSFKRLALFAF 75
           WVLDIGGF  K+++ F F
Sbjct: 61 IWVLDIGGFGIKKISSFCF 74

The following BLAST results are available for this feature:

BLAST of Lsi10G002230.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G002230.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTL4_CUCSA	1.9e-24	78.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432240 PE=4 SV=1	[more]

BLAST of Lsi10G002230.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi10G002230.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208237\|gb\|KGN63356.1\|	2.7e-24	78.48	hypothetical protein Csa_2G432240 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi10G002230	Lsi10G002230	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G002230.1.five_prime_UTR.1	Lsi10G002230.1.five_prime_UTR.1	five_prime_UTR
Lsi10G002230.1.five_prime_UTR.2	Lsi10G002230.1.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G002230.1.CDS.1	Lsi10G002230.1.CDS.1	CDS
Lsi10G002230.1.CDS.2	Lsi10G002230.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi10G002230.1	Lsi10G002230.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..22 score: