Lsi10G002230 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G002230
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr10 : 3573837 .. 3574571 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAAACACAAAACAAAACGAAATCAAACTGACAGCAGGCAGAGAGAGAGAAAGAGAGAGAAGAAATAAAAAAGAAAGGGTTGAGGTAAGATTACTGGTGGGATGATGGAAGAACCTATGAGAAATGGACTCGAAGCTCTTCTGAATAGGGAGTACAAGATCAGGTGGAACAGGCAGACCTGCCATCATATATTTGAAGATCAGAGCCTGATGCTCCAGCTCCTGCCACTGTAACACTGTGAAAGGTGACCTATTCATCCCCATCATTCCACTTGCTGTTGCTGCTGCTGCTACTGTCCTACTCCCATCCTCACTACCACCGCCACTGTTGTTCATAATAACCACCACCAGAGAAAGAGAGAGAGTTTATTCCTCCGCCTCCGCCTCCACCGCCGACCACCACCAGTTTCTCTAGTAAGTAATCCTGAAAACCCAGAACCCCTTTTAGCTAAAACACCCAGAAATCTTCAAACATAATCTGAGACAGAGAAGAAAATCATGGGACATAGATCAGCCTCTGTCTCCACCATCTGGATTGCTCTCACTGTCACTCTCTGTAGTGTTTGTTTTTAGTGTCCGAAGGTTTGTGTGGGTAAAGGGGGGGCAGTATCTGTATCTGTGGAGGAACCGAAGGAGGCCAAGTTTGGTCTCATTTTTATTTTTGGGTATTTGGGATTTTGGGTATTGGATATTGGAGGATTTAGCTTTAAAAGATTAGCTCTTTTTGCTTTTAGG

mRNA sequence

ATCAAACACAAAACAAAACGAAATCAAACTGACAGCAGGCAGAGAGAGAGAAAGAGAGAGAAGAAATAAAAAAGAAAGGGTTGAGGTAAGATTACTGGTGGGATGATGGAAGAACCTATGAGAAATGGACTCGAAGCTCTTCTGAATAGGGAGTACAAGATCAGGTGGAACAGGCAGACCTGCCATCATATATTTGAAGATCAGAGCCTGATGCTCCAGCTCCTGCCACTGTAACACTGTGAAAGGTGACCTATTCATCCCCATCATTCCACTTGCTGTTGCTGCTGCTGCTACTGTCCTACTCCCATCCTCACTACCACCGCCACTGTTGTTCATAATAACCACCACCAGAGAAAGAGAGAGAGTTTATTCCTCCGCCTCCGCCTCCACCGCCGACCACCACCAGTTTCTCTAAGAAGAAAATCATGGGACATAGATCAGCCTCTGTCTCCACCATCTGGATTGCTCTCACTGTCACTCTCTGTAGTTGTCCGAAGGTTTGTGTGGGTAAAGGGGGGGCAGTATCTGTATCTGTGGAGGAACCGAAGGAGGCCAAGTTTGGTCTCATTTTTATTTTTGGGTATTTGGGATTTTGGGTATTGGATATTGGAGGATTTAGCTTTAAAAGATTAGCTCTTTTTGCTTTTAGG

Coding sequence (CDS)

ATGGGACATAGATCAGCCTCTGTCTCCACCATCTGGATTGCTCTCACTGTCACTCTCTGTAGTTGTCCGAAGGTTTGTGTGGGTAAAGGGGGGGCAGTATCTGTATCTGTGGAGGAACCGAAGGAGGCCAAGTTTGGTCTCATTTTTATTTTTGGGTATTTGGGATTTTGGGTATTGGATATTGGAGGATTTAGCTTTAAAAGATTAGCTCTTTTTGCTTTTAGG

Protein sequence

MGHRSASVSTIWIALTVTLCSCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFWVLDIGGFSFKRLALFAFR
Homology
[Close]
BLAST of Lsi10G002230 vs. TrEMBL
Match: A0A0A0LTL4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432240 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-24
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 1 

Query: 1  MGHRSASVSTIWIALTVTLCSCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGF---- 60
          MGHRSASVSTIWIALT     CPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGF    
Sbjct: 1  MGHRSASVSTIWIALT-----CPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILG 60

Query: 61 -WVLDIGGFSFKRLALFAF 75
           WVLDIGGF  K+++ F F
Sbjct: 61 IWVLDIGGFGIKKISSFCF 74

[Close]
BLAST of Lsi10G002230 vs. NCBI nr
Match: gi|700208237|gb|KGN63356.1| (hypothetical protein Csa_2G432240 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-24
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 1 

Query: 1  MGHRSASVSTIWIALTVTLCSCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGF---- 60
          MGHRSASVSTIWIALT     CPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGF    
Sbjct: 1  MGHRSASVSTIWIALT-----CPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILG 60

Query: 61 -WVLDIGGFSFKRLALFAF 75
           WVLDIGGF  K+++ F F
Sbjct: 61 IWVLDIGGFGIKKISSFCF 74

The following BLAST results are available for this feature:
BLAST of Lsi10G002230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G002230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTL4_CUCSA1.9e-2478.48Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432240 PE=4 SV=1[more]
BLAST of Lsi10G002230 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi10G002230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208237|gb|KGN63356.1|2.7e-2478.48hypothetical protein Csa_2G432240 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G002230.1Lsi10G002230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..22
score:

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi10G002230Csa2G432240Cucumber (Chinese Long) v2culsiB094
Lsi10G002230CsaV3_2G035980Cucumber (Chinese Long) v3cuclsiB105
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G002230Cucumber (Gy14) v1cgylsiB424
Lsi10G002230Cucurbita maxima (Rimu)cmalsiB507
Lsi10G002230Cucurbita maxima (Rimu)cmalsiB548
Lsi10G002230Cucurbita moschata (Rifu)cmolsiB491
Lsi10G002230Cucurbita moschata (Rifu)cmolsiB533
Lsi10G002230Cucurbita pepo (Zucchini)cpelsiB220
Lsi10G002230Cucurbita pepo (Zucchini)cpelsiB589
Lsi10G002230Wild cucumber (PI 183967)cpilsiB092
Lsi10G002230Melon (DHL92) v3.5.1lsimeB053
Lsi10G002230Watermelon (Charleston Gray)lsiwcgB055
Lsi10G002230Watermelon (97103) v1lsiwmB068
Lsi10G002230Cucumber (Gy14) v2cgyblsiB087
Lsi10G002230Melon (DHL92) v3.6.1lsimedB054
Lsi10G002230Silver-seed gourdcarlsiB870
Lsi10G002230Silver-seed gourdcarlsiB961
Lsi10G002230Watermelon (97103) v2lsiwmbB054
Lsi10G002230Wax gourdlsiwgoB069