CsaV3_2G035980 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G035980
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 24176008 .. 24176259 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACATAGATCAGCCTCTGTCTCCACCATCTGGATTGCTCTCACTGTCACTCTCTGTAGTGTTTGTTTTTAGTGTCCGAAGGTTTGTGTGGGTAAAGGGGGGGCAGTATCTGTATCTGTGGAGGAACCGAAGGAAGCCAAGTTTGGTCTCATTTTTATTTTTGGGTATTTGGGATTTGGGATTTTGGGAATTTGGGTGTTGGATATTGGAGGATTTGGAATTAAAAAGATTAGCTCTTTTTGCTTTTAG

mRNA sequence

ATGGGACATAGATCAGCCTCTGTCTCCACCATCTGGATTGCTCTCACTTGTCCGAAGGTTTGTGTGGGTAAAGGGGGGGCAGTATCTGTATCTGTGGAGGAACCGAAGGAAGCCAAGTTTGGTCTCATTTTTATTTTTGGGTATTTGGGATTTGGGATTTTGGGAATTTGGGTGTTGGATATTGGAGGATTTGGAATTAAAAAGATTAGCTCTTTTTGCTTTTAG

Coding sequence (CDS)

ATGGGACATAGATCAGCCTCTGTCTCCACCATCTGGATTGCTCTCACTTGTCCGAAGGTTTGTGTGGGTAAAGGGGGGGCAGTATCTGTATCTGTGGAGGAACCGAAGGAAGCCAAGTTTGGTCTCATTTTTATTTTTGGGTATTTGGGATTTGGGATTTTGGGAATTTGGGTGTTGGATATTGGAGGATTTGGAATTAAAAAGATTAGCTCTTTTTGCTTTTAG

Protein sequence

MGHRSASVSTIWIALTCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILGIWVLDIGGFGIKKISSFCF

Homology

[Close]

BLAST of CsaV3_2G035980 vs. NCBI nr
Match: KGN63356.1 (hypothetical protein Csa_2G432240 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 8.6e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MGHRSASVSTIWIALTCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILGIWVLD 60
          MGHRSASVSTIWIALTCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILGIWVLD
Sbjct: 1  MGHRSASVSTIWIALTCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILGIWVLD 60

Query: 61 IGGFGIKKISSFCF 75
          IGGFGIKKISSFCF
Sbjct: 61 IGGFGIKKISSFCF 74

[Close]

BLAST of CsaV3_2G035980 vs. TrEMBL
Match: tr|A0A0A0LTL4|A0A0A0LTL4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G432240 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.7e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MGHRSASVSTIWIALTCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILGIWVLD 60
          MGHRSASVSTIWIALTCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILGIWVLD
Sbjct: 1  MGHRSASVSTIWIALTCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILGIWVLD 60

Query: 61 IGGFGIKKISSFCF 75
          IGGFGIKKISSFCF
Sbjct: 61 IGGFGIKKISSFCF 74

The following BLAST results are available for this feature:

BLAST of CsaV3_2G035980 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63356.1	8.6e-35	100.00	hypothetical protein Csa_2G432240 [Cucumis sativus]	[more]

BLAST of CsaV3_2G035980 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G035980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G035980 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTL4\|A0A0A0LTL4_CUCSA	5.7e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G432240 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G035980.1	CsaV3_2G035980.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G035980	Lsi10G002230	Bottle gourd (USVL1VR-Ls)	cuclsiB105

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G035980	Wax gourd	cucwgoB180
CsaV3_2G035980	Wax gourd	cucwgoB192
CsaV3_2G035980	Silver-seed gourd	carcucB1100
CsaV3_2G035980	Silver-seed gourd	carcucB0997
CsaV3_2G035980	Cucumber (Gy14) v2	cgybcucB065
CsaV3_2G035980	Cucumber (Gy14) v1	cgycucB401
CsaV3_2G035980	Cucurbita maxima (Rimu)	cmacucB0653
CsaV3_2G035980	Cucurbita maxima (Rimu)	cmacucB0703
CsaV3_2G035980	Cucurbita moschata (Rifu)	cmocucB0639
CsaV3_2G035980	Cucurbita moschata (Rifu)	cmocucB0689
CsaV3_2G035980	Cucurbita pepo (Zucchini)	cpecucB0337
CsaV3_2G035980	Cucurbita pepo (Zucchini)	cpecucB0881
CsaV3_2G035980	Wild cucumber (PI 183967)	cpicucB081
CsaV3_2G035980	Melon (DHL92) v3.5.1	cucmeB103
CsaV3_2G035980	Melon (DHL92) v3.6.1	cucmedB096
CsaV3_2G035980	Watermelon (Charleston Gray)	cucwcgB138
CsaV3_2G035980	Watermelon (97103) v1	cucwmB156
CsaV3_2G035980	Watermelon (97103) v2	cucwmbB125