Lsi10G002240.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTAGACTCAATTACCCTTTCTAAAGAAAAAAGAAAAAAAAAAGAAAAAAGAAATAACGCCTGTTCTTTCTGTATCTTCTCTCTCAGCATCTCTGTGTTGCTTTACGTTCCCAACAACTTGGCATCGGCCATTGCTCCCTTATTTATATTATTACCAACAATGAGCTTCACCGCTGCAACTCCAATCCATACGTCGTCGTATCCCCCTTCTTCTCTCCATTCCAATCGCTTCAACCCCACAATCCTCTCTCCCATCCCTCTCCGCCGTTCCTTTTCTTCTTTCATCCCCCGCCGCACCCCTCCTCTGCTTTCCGCTTCAGCCACGACGCCCGCAGACATCCAGATGGACGCCGATCGCCTTCAGAAGGGAATCGCCGAGTTCTACGATGAATCATCGGGGCTTTGGGAGAGCGTTTGGGGCGAACATATGCACCATGGATTTTACGATCCTGATTCTTCCATTTCCCTCTCCGATCACCGCTCTGCGCAAATCCGGATGATCGAGGAGACGCTCCGGTTCGCCGGCGTGGAGGCGGCGACGGCAGCGGTGGACGTTGGGTGTGGGATTGGGGGAAGTTCTAGGTATTTGGCGAAGAAGTTTGGGGCGAAATGTAGAGGTATAACTTTGAGCCCTGTCCAAGCTAAACGCGCTCAAGCGATTGCTGCCGCTGAAGGATTAAGTGATAAGGTGTGTACGGTCTTTGAAACCTCTGTTCTTATTTGTTCTTACTCCGTTTATCATTTTTGTTTTTCTTTGGAAATGCTCCGTTACGCTTTTGTTTTGACGTTTTCTTTGCTTTGATACTAAACTTGAAAATTAGTCCTCAATCAACTAGTACAACCAAAATAATTTGTACTTTCTAGATTAGTCCTTTTCAAGTTTGGTTGCAGAAATGGTTAAAAAAATAATGCTTCTTTTTAACCATTCTAAGTTTAGTACTTGAAATTAAATGATTAGTGGTATGTGTAATCTTTGAAATGAATACCAGAGAAATGTATGTTAATTTGAACTTCTAACTTTTTGGTTAGAAGAATATATAATGACTTAACCAATAAAGCTATATTGATATTAAGTGACAAAATTGTAGAAGAAGTTGAAAGAGTTACTTTATTTTCTTGGCGTTCAACAATATGTGAAGACGGGAATATATACTTTATTCAGAGATATAATATGGAATAGGAAGGTATCTAAAATGGTTAAAATGAAAGTTTTAACATAAATATGGGATTGACATGATCATAAGGAGGATTTTTGGTGGGTGGTAGGTGTGTTTTGAAGTGGCAGATGCTCTGAACCAACCATTCTCAGATGGGGAATTTGATCTGGTATGGTCCATGGAGAGTGGGGAGCACATGCCTGACAAATCCAAGGTTATTTTTTCTTTATACTCTCTCACTTTAATGATTTCCATTTCTCTTAAAGTCAGTGTTTGTTTGTGTTGTCTTATCTGTGTTTTGTTGATATGCTTCTTTAAAAACTCTGCAGTTTGTGAGTGAACTAGTTAGAGTTGCAGCCCCAGGAAGTACCATAATTATAGTTACATGGTGCCATAGAAACCTTGGGCCTTCTGAAAACTCCTTGCAGCCATGGGAGGAGAAGCTCCTTCAGAAGATTTGTGATGGCTTCTATCTCCCTGCTTGGTGTTCTACTGCTGATTATGTCAAATTACTCGAATCCCACAATCTACAGGTACTATTGTCTTTATACTTTGAGCATCGTTTCTATTTATTGATGGTCCGAGTTGACATAGTGCCAATAACAAGATTCAAGAGAATGAATGGTTCAAATCATTTAGATAAGGAGGGGAGATGTGATATTTGAAGAATTGTAAAGACATAAAATTGATGTTTTTAGTCGTGGATCCATGAACTTCTTGAGCCAAACAAAAAATGGCATAATTCCACACTACTCTACTCCTACTTCTCCAACTCCTTGGCTTAGGGTGTTTGGCCAAGGAGTTCGAGGAGTAAGAGTTGAGTGGAGTGAATTTTGAATTCCACTCCTTGTTTAGCCCAAGGAGTTCGTGGGTCCCACGACTAAAAGAACATTAATTTTATACCTTATTAACTTTTTACACTGTTGGTCTCAAGAGTTCATAACTCTCTAGACTTATAACTCCATGAAATACACAACTCCACTCTTTGTCCTGAACGCCCCAACCTTTAGGGAGCGTTTGGGACAAGGAGTGAAGTTGTTTAGTATGAAGAGTTGTTTAGTTGTGAGGCCACAGTGTAAGAAGTTAATAAAGTCATGGAAGTGATAATTTTTAGTCGTTGAAAAAATTCTTCGAGCAAATAAGTAGTGAAGTTTCACTCTCCCAACTCTTACTTTTTGAAATAAATGTGCACCTTAATGATTGTATCTTATAAGTAAATATTGTAAAGTTAAATAGTTATGTCGTGAGATTGGTCGAGAGGTATGGATCAATATAATTAAGTTGGTGCCAACATTCATCTCACATTAATCTTTGAATCTGAATCATAATTTGGGGACTGATTAAGAGAGACATTATTAGAAATTTTCAGGATCATTCACCATCATAATTTAATGAATTAATGGAACCCACGTGGGAATGAGAGTTAATTTTGGGATGTAGCGGAACATCTTGATAAAGCTGAATATTTATTTATTTATTTATTTGAATAAACTAAAAGGTTTTTTTCTTTATTATTTTTACTATTGGAAAATGATATGTAAAAAATGGTGTTTGGTGTTGATAGGATATAAAGACAGCAGACTGGTCTCAGAATGTTGCTCCGTTTTGGCCTGCAGTTATTCGGTCTGCTTTGACTTGGAAAGGCTTCACATCACTCTTACGAAGTGGTAAATATTCCTGACACTAAAAAATAATAATAAAAAAAAATCAATTTTACTCAACTGAAAATAAAATAAAATAATCAATTTTTTGTTAAAAACTTTTCCAAAATTCCTTTCTCAAACCACACTTTACTTGTTATTGCTTTTAATGGTCTAAATTTAAATTATGTGATTTTATTAAATCATATTGAAATTGATTAAATAATAATAATAGAAGAAAAAAAAGTATGTAATATATTTTTAAAATTTATAAAAAGAAAGTTAATAGGGACTGATTTTTTTTTCTTATAAAAAAACTAAAAATAAATTAGGAGTAG ATTAGACTCAATTACCCTTTCTAAAGAAAAAAGAAAAAAAAAAGAAAAAAGAAATAACGCCTGTTCTTTCTGTATCTTCTCTCTCAGCATCTCTGTGTTGCTTTACGTTCCCAACAACTTGGCATCGGCCATTGCTCCCTTATTTATATTATTACCAACAATGAGCTTCACCGCTGCAACTCCAATCCATACGTCGTCGTATCCCCCTTCTTCTCTCCATTCCAATCGCTTCAACCCCACAATCCTCTCTCCCATCCCTCTCCGCCGTTCCTTTTCTTCTTTCATCCCCCGCCGCACCCCTCCTCTGCTTTCCGCTTCAGCCACGACGCCCGCAGACATCCAGATGGACGCCGATCGCCTTCAGAAGGGAATCGCCGAGTTCTACGATGAATCATCGGGGCTTTGGGAGAGCGTTTGGGGCGAACATATGCACCATGGATTTTACGATCCTGATTCTTCCATTTCCCTCTCCGATCACCGCTCTGCGCAAATCCGGATGATCGAGGAGACGCTCCGGTTCGCCGGCGTGGAGGCGGCGACGGCAGCGGTGGACGTTGGGTGTGGGATTGGGGGAAGTTCTAGGTATTTGGCGAAGAAGTTTGGGGCGAAATGTAGAGGTATAACTTTGAGCCCTGTCCAAGCTAAACGCGCTCAAGCGATTGCTGCCGCTGAAGGATTAAGTGATAAGGTGTGTTTTGAAGTGGCAGATGCTCTGAACCAACCATTCTCAGATGGGGAATTTGATCTGGTATGGTCCATGGAGAGTGGGGAGCACATGCCTGACAAATCCAAGTTTGTGAGTGAACTAGTTAGAGTTGCAGCCCCAGGAAGTACCATAATTATAGTTACATGGTGCCATAGAAACCTTGGGCCTTCTGAAAACTCCTTGCAGCCATGGGAGGAGAAGCTCCTTCAGAAGATTTGTGATGGCTTCTATCTCCCTGCTTGGTGTTCTACTGCTGATTATGTCAAATTACTCGAATCCCACAATCTACAGGATATAAAGACAGCAGACTGGTCTCAGAATGTTGCTCCGTTTTGGCCTGCAGTTATTCGGTCTGCTTTGACTTGGAAAGGCTTCACATCACTCTTACGAAGTGGTAAATATTCCTGACACTAAAAAATAATAATAAAAAAAAATCAATTTTACTCAACTGAAAATAAAATAAAATAATCAATTTTTTGTTAAAAACTTTTCCAAAATTCCTTTCTCAAACCACACTTTACTTGTTATTGCTTTTAATGGTCTAAATTTAAATTATGTGATTTTATTAAATCATATTGAAATTGATTAAATAATAATAATAGAAGAAAAAAAAGTATGTAATATATTTTTAAAATTTATAAAAAGAAAGTTAATAGGGACTGATTTTTTTTTCTTATAAAAAAACTAAAAATAAATTAGGAGTAG ATGAGCTTCACCGCTGCAACTCCAATCCATACGTCGTCGTATCCCCCTTCTTCTCTCCATTCCAATCGCTTCAACCCCACAATCCTCTCTCCCATCCCTCTCCGCCGTTCCTTTTCTTCTTTCATCCCCCGCCGCACCCCTCCTCTGCTTTCCGCTTCAGCCACGACGCCCGCAGACATCCAGATGGACGCCGATCGCCTTCAGAAGGGAATCGCCGAGTTCTACGATGAATCATCGGGGCTTTGGGAGAGCGTTTGGGGCGAACATATGCACCATGGATTTTACGATCCTGATTCTTCCATTTCCCTCTCCGATCACCGCTCTGCGCAAATCCGGATGATCGAGGAGACGCTCCGGTTCGCCGGCGTGGAGGCGGCGACGGCAGCGGTGGACGTTGGGTGTGGGATTGGGGGAAGTTCTAGGTATTTGGCGAAGAAGTTTGGGGCGAAATGTAGAGGTATAACTTTGAGCCCTGTCCAAGCTAAACGCGCTCAAGCGATTGCTGCCGCTGAAGGATTAAGTGATAAGGTGTGTTTTGAAGTGGCAGATGCTCTGAACCAACCATTCTCAGATGGGGAATTTGATCTGGTATGGTCCATGGAGAGTGGGGAGCACATGCCTGACAAATCCAAGTTTGTGAGTGAACTAGTTAGAGTTGCAGCCCCAGGAAGTACCATAATTATAGTTACATGGTGCCATAGAAACCTTGGGCCTTCTGAAAACTCCTTGCAGCCATGGGAGGAGAAGCTCCTTCAGAAGATTTGTGATGGCTTCTATCTCCCTGCTTGGTGTTCTACTGCTGATTATGTCAAATTACTCGAATCCCACAATCTACAGGATATAAAGACAGCAGACTGGTCTCAGAATGTTGCTCCGTTTTGGCCTGCAGTTATTCGGTCTGCTTTGACTTGGAAAGGCTTCACATCACTCTTACGAAGTGGTAAATATTCCTGA MSFTAATPIHTSSYPPSSLHSNRFNPTILSPIPLRRSFSSFIPRRTPPLLSASATTPADIQMDADRLQKGIAEFYDESSGLWESVWGEHMHHGFYDPDSSISLSDHRSAQIRMIEETLRFAGVEAATAAVDVGCGIGGSSRYLAKKFGAKCRGITLSPVQAKRAQAIAAAEGLSDKVCFEVADALNQPFSDGEFDLVWSMESGEHMPDKSKFVSELVRVAAPGSTIIIVTWCHRNLGPSENSLQPWEEKLLQKICDGFYLPAWCSTADYVKLLESHNLQDIKTADWSQNVAPFWPAVIRSALTWKGFTSLLRSGKYS
BLAST of Lsi10G002240.1 vs. Swiss-Prot
Match: GTOMC_ARATH (Tocopherol O-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=VTE4 PE=1 SV=2) HSP 1 Score: 405.6 bits (1041), Expect = 5.0e-112 Identity = 207/325 (63.69%), Postives = 240/325 (73.85%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. Swiss-Prot
Match: GTOMC_ORYSJ (Probable tocopherol O-methyltransferase, chloroplastic OS=Oryza sativa subsp. japonica GN=VTE4 PE=2 SV=1) HSP 1 Score: 389.4 bits (999), Expect = 3.7e-107 Identity = 190/276 (68.84%), Postives = 221/276 (80.07%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. Swiss-Prot
Match: BQMT_SYNY3 (2-methyl-6-phytyl-1,4-hydroquinone methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0418 PE=1 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 2.2e-35 Identity = 88/244 (36.07%), Postives = 133/244 (54.51%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. Swiss-Prot
Match: REBMT_NOCAE (Demethylrebeccamycin-D-glucose O-methyltransferase OS=Lechevalieria aerocolonigenes GN=rebM PE=1 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 5.1e-24 Identity = 58/159 (36.48%), Postives = 93/159 (58.49%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. Swiss-Prot
Match: DMRMT_AMYMS (27-O-demethylrifamycin SV methyltransferase OS=Amycolatopsis mediterranei (strain S699) GN=RAM_03320 PE=1 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 2.8e-22 Identity = 69/224 (30.80%), Postives = 109/224 (48.66%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. TrEMBL
Match: A0A0A0LTM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432780 PE=4 SV=1) HSP 1 Score: 548.9 bits (1413), Expect = 4.1e-153 Identity = 271/316 (85.76%), Postives = 288/316 (91.14%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. TrEMBL
Match: V4SS85_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032026mg PE=4 SV=1) HSP 1 Score: 434.5 bits (1116), Expect = 1.1e-118 Identity = 208/273 (76.19%), Postives = 233/273 (85.35%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. TrEMBL
Match: A0A067DYF3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016921mg PE=4 SV=1) HSP 1 Score: 432.6 bits (1111), Expect = 4.2e-118 Identity = 207/273 (75.82%), Postives = 232/273 (84.98%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. TrEMBL
Match: V4TBP0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005360mg PE=4 SV=1) HSP 1 Score: 431.4 bits (1108), Expect = 9.4e-118 Identity = 206/270 (76.30%), Postives = 231/270 (85.56%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. TrEMBL
Match: A0A067EAQ8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016921mg PE=4 SV=1) HSP 1 Score: 429.5 bits (1103), Expect = 3.6e-117 Identity = 205/270 (75.93%), Postives = 230/270 (85.19%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. TAIR10
Match: AT1G64970.1 (AT1G64970.1 gamma-tocopherol methyltransferase) HSP 1 Score: 405.6 bits (1041), Expect = 2.8e-113 Identity = 207/325 (63.69%), Postives = 240/325 (73.85%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. TAIR10
Match: AT1G20330.1 (AT1G20330.1 sterol methyltransferase 2) HSP 1 Score: 82.0 bits (201), Expect = 7.1e-16 Identity = 66/240 (27.50%), Postives = 108/240 (45.00%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. TAIR10
Match: AT1G76090.1 (AT1G76090.1 sterol methyltransferase 3) HSP 1 Score: 78.6 bits (192), Expect = 7.9e-15 Identity = 64/240 (26.67%), Postives = 109/240 (45.42%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. TAIR10
Match: AT4G33110.1 (AT4G33110.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) HSP 1 Score: 51.6 bits (122), Expect = 1.0e-06 Identity = 47/171 (27.49%), Postives = 85/171 (49.71%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. NCBI nr
Match: gi|659125635|ref|XP_008462787.1| (PREDICTED: tocopherol O-methyltransferase, chloroplastic [Cucumis melo]) HSP 1 Score: 566.6 bits (1459), Expect = 2.7e-158 Identity = 276/314 (87.90%), Postives = 294/314 (93.63%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. NCBI nr
Match: gi|778673784|ref|XP_004151846.2| (PREDICTED: tocopherol O-methyltransferase, chloroplastic [Cucumis sativus]) HSP 1 Score: 548.9 bits (1413), Expect = 5.8e-153 Identity = 271/316 (85.76%), Postives = 288/316 (91.14%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. NCBI nr
Match: gi|567889795|ref|XP_006437418.1| (hypothetical protein CICLE_v10032026mg [Citrus clementina]) HSP 1 Score: 434.5 bits (1116), Expect = 1.6e-118 Identity = 208/273 (76.19%), Postives = 233/273 (85.35%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. NCBI nr
Match: gi|568862431|ref|XP_006484687.1| (PREDICTED: probable tocopherol O-methyltransferase, chloroplastic isoform X1 [Citrus sinensis]) HSP 1 Score: 433.7 bits (1114), Expect = 2.7e-118 Identity = 207/270 (76.67%), Postives = 232/270 (85.93%), Query Frame = 1
BLAST of Lsi10G002240.1 vs. NCBI nr
Match: gi|641828878|gb|KDO48014.1| (hypothetical protein CISIN_1g016921mg [Citrus sinensis]) HSP 1 Score: 432.6 bits (1111), Expect = 6.1e-118 Identity = 207/273 (75.82%), Postives = 232/273 (84.98%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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