Lsi10G001730.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTGTGGACGACCTCATGACATCTAAAATGAAAGCCCACTTTCAAACTTTCAACGCCCATGGTTTCCGGGTCGGTCTATCTCCCCTCTCTTCTATAGTATTTAAACCACCGCCACACCAAAATAAATCCCAGACCCGAACCATCACCATGGCGGCGCGGCGGTGCACGGCGATCAAGCCCAGCCGGAGCGACGTCGTGTTGGCCGAAGAGGAGCAGATGCGAATCACCGATCAGATCAGAGCCCAGTTCGATTCCATCGCCCCCAAGCGGCCGATCAAACCGAGCCGAAGCGAATCCGATTCCTTGACTCAAAACCCATCTGGAATCAACTCGGAAGAGACTATTCCCGAGCTCGATAAGCTCCGAAATCTGCAGTCACAATCTGATGTATTCGTCGATTTTTTTTTTTACATTTTTTTGTACTCGTGATCTGGGTTTGAACATTTGAGGAATCTTTATAGGTTTTACGCTTGGGAGTTGAAGATTCGTTGGTGCAGGAGGAGTATGTGGAGACAGAGTATTACAAGGAGTTGGGTTCGATTGAAAAACGCCATCATAAGGTTTCTCCTTTTCTTTCTTTTTCTTTAGGAACTTCTTTTTTGGGTGTTTAATGAGAATGATTGTTTGTTTTAAGTTTAAATTAGGTTGTATCTATAATCTTTGTGTCAAATGTTGATGAGGTTTAAAGGTTTAAAACAAAAAATGTTTCTCTAAACTACATTGTGCTGAATAATTTGGTAGATTTTAGAAAATGTCAGAATTAATGAACACAAAATTGAAAATCTATACAAACATATTAAAGTTTTTTAAATTTTATTGACTTAGTCGATACAAAAATTTAAAATATAAAGAGTTAAAGAATTTAACAGACAAATCCAAAAGTTTTATATATCTTCCAACAACCATTTGGTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTGCAAATTCTAGATGTTTTCTCACAAGTTTTTTTACGTTCTTACATAAACATATAAGGTGTGTGGAGAATACATTTTCAAGTGTTTAATTTAAAAAACAAGTCATGTTGAAAAAATTTAGAGTGTTTGGCAACCACTCAAAATAGTTTTTGAAGTGTATTTTAAATAGTTTTTGTCAAAAGAGTTTAAATAAAAAATAAATTTTTTGAAAAATATTTTATTCTCTAGTCAATCCAAACGGGCATTTAAGCTCTCACTCAAATTCTAAAAACAATTTTTTTTTTTTTTTTTTTTAAACTATGAACCTTTAGAAAAGAATTTTGTTTTTAGTTTTTAGTTTTTGAAATTCATGTTTTTTTTTTTCTTTCTAAATTCCATACTATAGTTCTCATATTTCTCAACTTAAATTTTTAGTCAAATTCCAAGAGAAAAGAAAAGAATTTGAATACTATTTTTAATTTTTAAAATTTCGCTTGTTTTTTTAAAAATATCAGACAAAGAAATTGATTTATGAAAGTAGTGTTTACTATTTATAAGCTTAATTTTCAAAAACAAAAAATCTTAGCCTAAATTTTTATTTTTTAGTTCTTAAAACTTAGCTGGTAAAAGGATTCAAATATTTGTAAGTGAAAGTAGTGTTTATATGGTCAAATGTTCCAAAACTATATAGTTATCAAATGAAACCTTAATGACAATATTTGTGAGTTAATCCTTTGTTATTATCATTGATTTTGGTGATGATTTTGGAGGGAGCAGATAGGGAGTGGGTTCATACAGGTAGGGAATGAAGGAGGAGAAAATGGAGTTCATATTCAGAATAATGAAACTGAGTTTATTGATGTTGCAAATGGGAGGGTTCATCTTCATGGTGGCTACAAAGGCAATCCTGCAACTAATGACTGGCTCCCTAAATTTGATGATCGTGATTTAATCTTCAGATCCCAAAAGCCCAGTCGAAGCGAAGGTTCCTTGTTCTAACCATGGAGAAATGAAACAATGTGGCTAGCGATTCTGTAAACTCTTGATATACAAAACGAGGATTTGAACTCGTTTTCGGACTTTGATGTTCGACGATAGTTTGTAGCCACAATCTGGCTGTATTGCTATCATGAACTGAATTAGCATTGGTAGTTCAATTTTAACTGGATTTCATATTGAAATCTACATTCAAACCAAAAAATTGGACTACTTTTAATGTTTGGTAAAGGTGTCTGTCTGTACGCTAATTTGCTTGTGAAAGTCATAATGAAAATAAAACTTCATTGGGTTTTTGGCGT TTGTGGACGACCTCATGACATCTAAAATGAAAGCCCACTTTCAAACTTTCAACGCCCATGGTTTCCGGGTCGGTCTATCTCCCCTCTCTTCTATAGTATTTAAACCACCGCCACACCAAAATAAATCCCAGACCCGAACCATCACCATGGCGGCGCGGCGGTGCACGGCGATCAAGCCCAGCCGGAGCGACGTCGTGTTGGCCGAAGAGGAGCAGATGCGAATCACCGATCAGATCAGAGCCCAGTTCGATTCCATCGCCCCCAAGCGGCCGATCAAACCGAGCCGAAGCGAATCCGATTCCTTGACTCAAAACCCATCTGGAATCAACTCGGAAGAGACTATTCCCGAGCTCGATAAGCTCCGAAATCTGCAGTCACAATCTGATGTTTTACGCTTGGGAGTTGAAGATTCGTTGGTGCAGGAGGAGTATGTGGAGACAGAGTATTACAAGGAGTTGGGTTCGATTGAAAAACGCCATCATAAGATAGGGAGTGGGTTCATACAGGTAGGGAATGAAGGAGGAGAAAATGGAGTTCATATTCAGAATAATGAAACTGAGTTTATTGATGTTGCAAATGGGAGGGTTCATCTTCATGGTGGCTACAAAGGCAATCCTGCAACTAATGACTGGCTCCCTAAATTTGATGATCGTGATTTAATCTTCAGATCCCAAAAGCCCAGTCGAAGCGAAGGTTCCTTGTTCTAACCATGGAGAAATGAAACAATGTGGCTAGCGATTCTGTAAACTCTTGATATACAAAACGAGGATTTGAACTCGTTTTCGGACTTTGATGTTCGACGATAGTTTGTAGCCACAATCTGGCTGTATTGCTATCATGAACTGAATTAGCATTGGTAGTTCAATTTTAACTGGATTTCATATTGAAATCTACATTCAAACCAAAAAATTGGACTACTTTTAATGTTTGGTAAAGGTGTCTGTCTGTACGCTAATTTGCTTGTGAAAGTCATAATGAAAATAAAACTTCATTGGGTTTTTGGCGT ATGACATCTAAAATGAAAGCCCACTTTCAAACTTTCAACGCCCATGGTTTCCGGGTCGGTCTATCTCCCCTCTCTTCTATAGTATTTAAACCACCGCCACACCAAAATAAATCCCAGACCCGAACCATCACCATGGCGGCGCGGCGGTGCACGGCGATCAAGCCCAGCCGGAGCGACGTCGTGTTGGCCGAAGAGGAGCAGATGCGAATCACCGATCAGATCAGAGCCCAGTTCGATTCCATCGCCCCCAAGCGGCCGATCAAACCGAGCCGAAGCGAATCCGATTCCTTGACTCAAAACCCATCTGGAATCAACTCGGAAGAGACTATTCCCGAGCTCGATAAGCTCCGAAATCTGCAGTCACAATCTGATGTTTTACGCTTGGGAGTTGAAGATTCGTTGGTGCAGGAGGAGTATGTGGAGACAGAGTATTACAAGGAGTTGGGTTCGATTGAAAAACGCCATCATAAGATAGGGAGTGGGTTCATACAGGTAGGGAATGAAGGAGGAGAAAATGGAGTTCATATTCAGAATAATGAAACTGAGTTTATTGATGTTGCAAATGGGAGGGTTCATCTTCATGGTGGCTACAAAGGCAATCCTGCAACTAATGACTGGCTCCCTAAATTTGATGATCGTGATTTAATCTTCAGATCCCAAAAGCCCAGTCGAAGCGAAGGTTCCTTGTTCTAA MTSKMKAHFQTFNAHGFRVGLSPLSSIVFKPPPHQNKSQTRTITMAARRCTAIKPSRSDVVLAEEEQMRITDQIRAQFDSIAPKRPIKPSRSESDSLTQNPSGINSEETIPELDKLRNLQSQSDVLRLGVEDSLVQEEYVETEYYKELGSIEKRHHKIGSGFIQVGNEGGENGVHIQNNETEFIDVANGRVHLHGGYKGNPATNDWLPKFDDRDLIFRSQKPSRSEGSLF
BLAST of Lsi10G001730.1 vs. TrEMBL
Match: A0A0A0LN14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G425770 PE=4 SV=1) HSP 1 Score: 298.5 bits (763), Expect = 6.9e-78 Identity = 154/185 (83.24%), Postives = 160/185 (86.49%), Query Frame = 1
BLAST of Lsi10G001730.1 vs. TrEMBL
Match: I3SQV9_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 8.0e-42 Identity = 103/181 (56.91%), Postives = 124/181 (68.51%), Query Frame = 1
BLAST of Lsi10G001730.1 vs. TrEMBL
Match: W9QYM1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009299 PE=4 SV=1) HSP 1 Score: 176.8 bits (447), Expect = 3.0e-41 Identity = 102/179 (56.98%), Postives = 126/179 (70.39%), Query Frame = 1
BLAST of Lsi10G001730.1 vs. TrEMBL
Match: A0A0D2TZ94_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G079000 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 1.0e-36 Identity = 94/178 (52.81%), Postives = 122/178 (68.54%), Query Frame = 1
BLAST of Lsi10G001730.1 vs. TrEMBL
Match: U5G881_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s10420g PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 6.6e-36 Identity = 96/180 (53.33%), Postives = 122/180 (67.78%), Query Frame = 1
BLAST of Lsi10G001730.1 vs. TAIR10
Match: AT4G37300.1 (AT4G37300.1 maternal effect embryo arrest 59) HSP 1 Score: 121.7 bits (304), Expect = 5.9e-28 Identity = 80/183 (43.72%), Postives = 110/183 (60.11%), Query Frame = 1
BLAST of Lsi10G001730.1 vs. NCBI nr
Match: gi|659111599|ref|XP_008455813.1| (PREDICTED: uncharacterized protein LOC103495913 [Cucumis melo]) HSP 1 Score: 307.0 bits (785), Expect = 2.8e-80 Identity = 157/185 (84.86%), Postives = 164/185 (88.65%), Query Frame = 1
BLAST of Lsi10G001730.1 vs. NCBI nr
Match: gi|449468315|ref|XP_004151867.1| (PREDICTED: uncharacterized protein LOC101210723 isoform X1 [Cucumis sativus]) HSP 1 Score: 298.5 bits (763), Expect = 9.9e-78 Identity = 154/185 (83.24%), Postives = 160/185 (86.49%), Query Frame = 1
BLAST of Lsi10G001730.1 vs. NCBI nr
Match: gi|388509170|gb|AFK42651.1| (unknown [Lotus japonicus]) HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41 Identity = 103/181 (56.91%), Postives = 124/181 (68.51%), Query Frame = 1
BLAST of Lsi10G001730.1 vs. NCBI nr
Match: gi|703094673|ref|XP_010095330.1| (hypothetical protein L484_009299 [Morus notabilis]) HSP 1 Score: 176.8 bits (447), Expect = 4.4e-41 Identity = 102/179 (56.98%), Postives = 126/179 (70.39%), Query Frame = 1
BLAST of Lsi10G001730.1 vs. NCBI nr
Match: gi|778673632|ref|XP_011650032.1| (PREDICTED: uncharacterized protein LOC101210723 isoform X2 [Cucumis sativus]) HSP 1 Score: 173.7 bits (439), Expect = 3.7e-40 Identity = 92/113 (81.42%), Postives = 97/113 (85.84%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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