CmoCh12G000950.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAACTGGGTAACAACAATTTCTTTTGTCTTGTATTCTACTTGAAAGTTCTTCATTTTTATTACTGTTTTTATTCCCTCTTTGCTTTTCTACCCAATGATCTTATGTTGTTTTGTAAAAGGAAAGTTTATTTACTATCGTTTTCGTGCTATTTACGCTCGTCAATCTACTGCCTTTTGTCCAACTTGCTGTTCTAAGTTACATTTGTAATTATGTATCTGCAGAAAGTGACCTTCCATTTTACTCTTCAATGACCAGCTCAAATTGTGTTCCAGAATCTATTGAATGCAATTACAATACTGAGTTGCAACACCAGATCGTTAGTATCGATCCAATTGGTCTCTTGTGTCGAGAAAAGATAAACCACGAGGATGCCATTCAATCTCCATCTTCAACTGGTGGTGGGAATAGTTGCCTGACCACTAAAATTAACCACTCGTCTGTAGATTGTTTTGATGATAATGCTGAAGGTATTAATGCATTTATGTCATCATCCGGTAAGAAATCCTCAGACTCGTATGTGGACAAAAGTGTCATGGAATGTCAAATGTCGACAATGATAGTATGTGACAAGGAAATTAATGTCAATGATGTGAAGGACATCTGTATTGATGAAGGGGTGCCTTCTTTGGTCAACTTCATCTTTAGGAGTACGGATGAGAAGTCAAGCTACAAAACCCTGCCTTTGAACCAAAATGAAGGTTCTATAAAAGAACAAAAGAATTCTTCTGAGGTGTTGGAGTCCATTGCAGATAATAAAAAAATCTCTTTAGAAGATCACTTTGCCACGGACTGGAGTACTCATAATGATGCTAAGGATCTGAATCAGATAGAGGAAGCAAAACTCAATCAAAGTGAACCACAAGTTCCGGTGCAAAAGCTAGTTAGGGAAAGTCACTCTTCCGAGTCTTTAGACAGCCTAGGTATCCAGGTATGCATATTTCTGGTCAAGTTATTAATCATGTTGTGAGATCCCACATCGGTTGGAGAGGAGAACGAAACACCCTTTATAAATGTGTGGAAACCTCTCCCTAGCAGACGCATTTTAAAAACTTTGAGGGAAACTCCGAAAGGGAAAGCCCAAAGAAGGCAATATTTGCTAACGGTGGACTTGGTCTGTTACAAATGGTATTAGAGCCAAACACCGAGCGGTGTGCTAGCGAGAATGCTGGGCCCCGAAGGGGGGTGAATTGTGAGATCCCACATCGGTTGGAGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCTCTAGCCGATGCGTTTTAAAAACTTTGAGATAAATCCCGTAAGGGAAAACCCAAAGAGGACAATATCTACTAGCGGTGTGCTTGGGCTTGAACTGTTACAGATGTTCCTCTTGCACCTCATGTTCAAGTGATTCTGAACTTTTCAGTGCACTTCATGTTCAAGTGATTCTGAACTTTTCAGGTTTGATGTTTTTCAGAATTGGTTGATGTAGGTTGGATTTCTTGTAATGGCAGATATCTAGTGAAAAAGCCAACTCGGAAGACCCTGCTTCAGCTTTCAAATCTGTTGAATCTTGCAATGACAATTCTGCTCTGGGAACTGAGGCAGAATCACCAAATGAAAACATTCCAACACAACAACCTTCAGCTCATAATAATGAATTTGAGAAGGGAAGTACTACATTGAATCTCAATTCAATCTCTCCCATGGTCAATGGTGAAGAAGAACACCATGGAAATATCAACTCAGACTACCCAGGACCCATGACCAGTAGTGCTGGGACACAGGAGTGTTATGGAAGCAACGATTCTGCATTCGGAACCCAAGTTTCGACAAGTCGATTAATTTCAAGCCAGACTGCACACGACAGTGGCGAGTCTAGTTTCTCTGCTCTAGATCCATTAGCTAGCCTTGTTACTTACTCGGGGCCAATAGCTTATTCTGGAAGCATCTCTCTTCGATCGGAAAGTAGCACGACAAGCACCCGCTCTTTTGCCTTCCCTATGTAAGTAGCAAGCAATCTCTCTTCTCTTCTTGATCTATCCTGTCCTAAATTGTAATCCAAGGTGAATGATATTTACAGATTACAACAGTCTGAATGGAATAGCAGCCCGGTTAAAATGGTAAAAGCTGAACGGAGGCATTACCGGAAGTACAGAGGATGGAGGGAGGGGCTTCTATGCTGCAGATTCTGAGTGCTTTCTTTGTTTTGCTATCAGTAGAGGTAGATTCTGTCCACACATGTAAGTAGAAGATGCATTATTTCTTTGCTATTATGTGAAATTTAAGGTGTTAGTAATACCTCATCTCTTTCTCTCTGGTTGTTTCTTGTTTCTGCACTCATTCATATTGTTCTTTGATTTGTATAAGAACACGATATGACATAGTTTCTCTGCATAGAATGATATTATCACAACTCTTCCACAAGAGTTAAATTTTTATCACAAACTCTTATATGAGACAAT ATGAAACTGGAAAGTGACCTTCCATTTTACTCTTCAATGACCAGCTCAAATTGTGTTCCAGAATCTATTGAATGCAATTACAATACTGAGTTGCAACACCAGATCGTTAGTATCGATCCAATTGGTCTCTTGTGTCGAGAAAAGATAAACCACGAGGATGCCATTCAATCTCCATCTTCAACTGGTGGTGGGAATAGTTGCCTGACCACTAAAATTAACCACTCGTCTGTAGATTGTTTTGATGATAATGCTGAAGGTATTAATGCATTTATGTCATCATCCGGTAAGAAATCCTCAGACTCGTATGTGGACAAAAGTGTCATGGAATGTCAAATGTCGACAATGATAGTATGTGACAAGGAAATTAATGTCAATGATGTGAAGGACATCTGTATTGATGAAGGGGTGCCTTCTTTGGTCAACTTCATCTTTAGGAGTACGGATGAGAAGTCAAGCTACAAAACCCTGCCTTTGAACCAAAATGAAGGTTCTATAAAAGAACAAAAGAATTCTTCTGAGGTGTTGGAGTCCATTGCAGATAATAAAAAAATCTCTTTAGAAGATCACTTTGCCACGGACTGGAGTACTCATAATGATGCTAAGGATCTGAATCAGATAGAGGAAGCAAAACTCAATCAAAGTGAACCACAAGTTCCGGTGCAAAAGCTAGTTAGGGAAAGTCACTCTTCCGAGTCTTTAGACAGCCTAGGTATCCAGATATCTAGTGAAAAAGCCAACTCGGAAGACCCTGCTTCAGCTTTCAAATCTGTTGAATCTTGCAATGACAATTCTGCTCTGGGAACTGAGGCAGAATCACCAAATGAAAACATTCCAACACAACAACCTTCAGCTCATAATAATGAATTTGAGAAGGGAAGTACTACATTGAATCTCAATTCAATCTCTCCCATGGTCAATGGTGAAGAAGAACACCATGGAAATATCAACTCAGACTACCCAGGACCCATGACCAGTAGTGCTGGGACACAGGAGTGTTATGGAAGCAACGATTCTGCATTCGGAACCCAAGTTTCGACAAGTCGATTAATTTCAAGCCAGACTGCACACGACAGTGGCGAGTCTAGTTTCTCTGCTCTAGATCCATTAGCTAGCCTTGTTACTTACTCGGGGCCAATAGCTTATTCTGGAAGCATCTCTCTTCGATCGGAAAGTAGCACGACAAGCACCCGCTCTTTTGCCTTCCCTATATTACAACAGTCTGAATGGAATAGCAGCCCGGTTAAAATGGTAAAAGCTGAACGGAGGCATTACCGGAAGTACAGAGGATGGAGGGAGGGGCTTCTATGCTGCAGATTCTGAGTGCTTTCTTTGTTTTGCTATCAGTAGAGGTAGATTCTGTCCACACATGTAAGTAGAAGATGCATTATTTCTTTGCTATTATGTGAAATTTAAGGTGTTAGTAATACCTCATCTCTTTCTCTCTGGTTGTTTCTTGTTTCTGCACTCATTCATATTGTTCTTTGATTTGTATAAGAACACGATATGACATAGTTTCTCTGCATAGAATGATATTATCACAACTCTTCCACAAGAGTTAAATTTTTATCACAAACTCTTATATGAGACAAT ATGAAACTGGAAAGTGACCTTCCATTTTACTCTTCAATGACCAGCTCAAATTGTGTTCCAGAATCTATTGAATGCAATTACAATACTGAGTTGCAACACCAGATCGTTAGTATCGATCCAATTGGTCTCTTGTGTCGAGAAAAGATAAACCACGAGGATGCCATTCAATCTCCATCTTCAACTGGTGGTGGGAATAGTTGCCTGACCACTAAAATTAACCACTCGTCTGTAGATTGTTTTGATGATAATGCTGAAGGTATTAATGCATTTATGTCATCATCCGGTAAGAAATCCTCAGACTCGTATGTGGACAAAAGTGTCATGGAATGTCAAATGTCGACAATGATAGTATGTGACAAGGAAATTAATGTCAATGATGTGAAGGACATCTGTATTGATGAAGGGGTGCCTTCTTTGGTCAACTTCATCTTTAGGAGTACGGATGAGAAGTCAAGCTACAAAACCCTGCCTTTGAACCAAAATGAAGGTTCTATAAAAGAACAAAAGAATTCTTCTGAGGTGTTGGAGTCCATTGCAGATAATAAAAAAATCTCTTTAGAAGATCACTTTGCCACGGACTGGAGTACTCATAATGATGCTAAGGATCTGAATCAGATAGAGGAAGCAAAACTCAATCAAAGTGAACCACAAGTTCCGGTGCAAAAGCTAGTTAGGGAAAGTCACTCTTCCGAGTCTTTAGACAGCCTAGGTATCCAGATATCTAGTGAAAAAGCCAACTCGGAAGACCCTGCTTCAGCTTTCAAATCTGTTGAATCTTGCAATGACAATTCTGCTCTGGGAACTGAGGCAGAATCACCAAATGAAAACATTCCAACACAACAACCTTCAGCTCATAATAATGAATTTGAGAAGGGAAGTACTACATTGAATCTCAATTCAATCTCTCCCATGGTCAATGGTGAAGAAGAACACCATGGAAATATCAACTCAGACTACCCAGGACCCATGACCAGTAGTGCTGGGACACAGGAGTGTTATGGAAGCAACGATTCTGCATTCGGAACCCAAGTTTCGACAAGTCGATTAATTTCAAGCCAGACTGCACACGACAGTGGCGAGTCTAGTTTCTCTGCTCTAGATCCATTAGCTAGCCTTGTTACTTACTCGGGGCCAATAGCTTATTCTGGAAGCATCTCTCTTCGATCGGAAAGTAGCACGACAAGCACCCGCTCTTTTGCCTTCCCTATATTACAACAGTCTGAATGGAATAGCAGCCCGGTTAAAATGGTAAAAGCTGAACGGAGGCATTACCGGAAGTACAGAGGATGGAGGGAGGGGCTTCTATGCTGCAGATTCTGA
BLAST of CmoCh12G000950.1 vs. TrEMBL
Match: A0A0A0KFP8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G370190 PE=4 SV=1) HSP 1 Score: 509.6 bits (1311), Expect = 3.8e-141 Identity = 288/439 (65.60%), Postives = 335/439 (76.31%), Query Frame = 1
BLAST of CmoCh12G000950.1 vs. TrEMBL
Match: A0A022QJK2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a006975mg PE=4 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 2.0e-33 Identity = 142/419 (33.89%), Postives = 203/419 (48.45%), Query Frame = 1
BLAST of CmoCh12G000950.1 vs. TrEMBL
Match: A0A0B2RDJ3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014766 PE=4 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 3.4e-33 Identity = 127/377 (33.69%), Postives = 183/377 (48.54%), Query Frame = 1
BLAST of CmoCh12G000950.1 vs. TrEMBL
Match: I1JEJ9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G122700 PE=4 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 3.4e-33 Identity = 127/377 (33.69%), Postives = 183/377 (48.54%), Query Frame = 1
BLAST of CmoCh12G000950.1 vs. TrEMBL
Match: A0A0R0L6H8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G122700 PE=4 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 4.5e-33 Identity = 133/408 (32.60%), Postives = 195/408 (47.79%), Query Frame = 1
BLAST of CmoCh12G000950.1 vs. TAIR10
Match: AT2G03810.1 (AT2G03810.1 18S pre-ribosomal assembly protein gar2-related) HSP 1 Score: 125.6 bits (314), Expect = 7.8e-29 Identity = 130/389 (33.42%), Postives = 178/389 (45.76%), Query Frame = 1
BLAST of CmoCh12G000950.1 vs. TAIR10
Match: AT1G13650.2 (AT1G13650.2 BEST Arabidopsis thaliana protein match is: 18S pre-ribosomal assembly protein gar2-related (TAIR:AT2G03810.4)) HSP 1 Score: 53.1 bits (126), Expect = 4.9e-07 Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 1
BLAST of CmoCh12G000950.1 vs. NCBI nr
Match: gi|659089264|ref|XP_008445414.1| (PREDICTED: uncharacterized protein LOC103488449 isoform X1 [Cucumis melo]) HSP 1 Score: 533.1 bits (1372), Expect = 4.6e-148 Identity = 302/450 (67.11%), Postives = 345/450 (76.67%), Query Frame = 1
BLAST of CmoCh12G000950.1 vs. NCBI nr
Match: gi|449452821|ref|XP_004144157.1| (PREDICTED: uncharacterized protein LOC101217989 [Cucumis sativus]) HSP 1 Score: 524.6 bits (1350), Expect = 1.6e-145 Identity = 296/451 (65.63%), Postives = 343/451 (76.05%), Query Frame = 1
BLAST of CmoCh12G000950.1 vs. NCBI nr
Match: gi|659089276|ref|XP_008445421.1| (PREDICTED: uncharacterized protein LOC103488449 isoform X2 [Cucumis melo]) HSP 1 Score: 516.2 bits (1328), Expect = 5.8e-143 Identity = 293/438 (66.89%), Postives = 336/438 (76.71%), Query Frame = 1
BLAST of CmoCh12G000950.1 vs. NCBI nr
Match: gi|700192470|gb|KGN47674.1| (hypothetical protein Csa_6G370190 [Cucumis sativus]) HSP 1 Score: 509.6 bits (1311), Expect = 5.4e-141 Identity = 288/439 (65.60%), Postives = 335/439 (76.31%), Query Frame = 1
BLAST of CmoCh12G000950.1 vs. NCBI nr
Match: gi|719967157|ref|XP_010261008.1| (PREDICTED: uncharacterized protein LOC104599949 isoform X1 [Nelumbo nucifera]) HSP 1 Score: 155.2 bits (391), Expect = 2.6e-34 Identity = 134/360 (37.22%), Postives = 184/360 (51.11%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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