CmoCh11G018580.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G018580.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Glycine rich protein
Location	Cmo_Chr11 : 12943809 .. 12944645 (-)
Sequence length	740

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCTCAAAAAATCGATCTTTACTACACACAAAAAAATGAGCTCCAAGGCTTTTGTTTTCCTCGGCCTTCTTTTCGCCTTTGTTCTCCTCATCTCTTCGAATGTGGCTGCGAGCGACCTCGCACACACCTCGGCCAAGAACGAAAATGGTGAGTCTCACATGATAAGATTCTATGACACTTAAAATCTTGACCGTAATGTTTAGTTTAGTTTCACTTGGCGTTAATTTTAATGATGATGTTGTAGTGGCTACAATGGAGACCAATGGCGTAGAGGATGCCAAGTATGGAGGATATGATAGGGGATACCGTCGTGGTCGCTACGATCATGGCGGCCATGATGGGCACGGTCATGGTGGCTACCGTTGCCGGCATGGTTGGTGTCGCTACCGGTGCTGCAGCTACGCCGGTGAAGTGGTGGAGGGTGCAAAGCCATAAGGCATAGTGGGTGTGCTGAAATAATGAAATGGTTTAATGTTTGAGAAATAAATGCATGGGGAATGGAATGCCTCGGCTGTTCTTTCTCCGTGTTTGGTTTTTAGTGTGTTTCTGTTTGCAAATCCGGTTTCTATCTCGATAACTTGAGCATAGTTCAATCGGTAAAAATATCTATCTAAGTAAGCGATAATTAGCAGATATTTATTTCTTTAAAGTCAGAACGTAACCCTACCTTTGTTGATTATTTGATTTCTATCTTAATATTAGGTTAACTAAAAAAACGTTCTTTTTAGTCAAATTACTTCATATAATTTGTGTTCAATTTTACGAGAAATCCTTAAAAAGAAACCGTCTTAAAGTGAGTGACCATTTTAAATTATTGGAAGCAGGAAAGATGTCCC

mRNA sequence

CATCTCAAAAAATCGATCTTTACTACACACAAAAAAATGAGCTCCAAGGCTTTTGTTTTCCTCGGCCTTCTTTTCGCCTTTGTTCTCCTCATCTCTTCGAATGTGGCTGCGAGCGACCTCGCACACACCTCGGCCAAGAACGAAAATGTGGCTACAATGGAGACCAATGGCGTAGAGGATGCCAAGTATGGAGGATATGATAGGGGATACCGTCGTGGTCGCTACGATCATGGCGGCCATGATGGGCACGGTCATGGTGGCTACCGTTGCCGGCATGGTTGGTGTCGCTACCGGTGCTGCAGCTACGCCGGTGAAGTGGTGGAGGGTGCAAAGCCATAAGGCATAGTGGGTGTGCTGAAATAATGAAATGGTTTAATGTTTGAGAAATAAATGCATGGGGAATGGAATGCCTCGGCTGTTCTTTCTCCGTGTTTGGTTTTTAGTGTGTTTCTGTTTGCAAATCCGGTTTCTATCTCGATAACTTGAGCATAGTTCAATCGGTAAAAATATCTATCTAAGTAAGCGATAATTAGCAGATATTTATTTCTTTAAAGTCAGAACGTAACCCTACCTTTGTTGATTATTTGATTTCTATCTTAATATTAGGTTAACTAAAAAAACGTTCTTTTTAGTCAAATTACTTCATATAATTTGTGTTCAATTTTACGAGAAATCCTTAAAAAGAAACCGTCTTAAAGTGAGTGACCATTTTAAATTATTGGAAGCAGGAAAGATGTCCC

Coding sequence (CDS)

ATGAGCTCCAAGGCTTTTGTTTTCCTCGGCCTTCTTTTCGCCTTTGTTCTCCTCATCTCTTCGAATGTGGCTGCGAGCGACCTCGCACACACCTCGGCCAAGAACGAAAATGTGGCTACAATGGAGACCAATGGCGTAGAGGATGCCAAGTATGGAGGATATGATAGGGGATACCGTCGTGGTCGCTACGATCATGGCGGCCATGATGGGCACGGTCATGGTGGCTACCGTTGCCGGCATGGTTGGTGTCGCTACCGGTGCTGCAGCTACGCCGGTGAAGTGGTGGAGGGTGCAAAGCCATAA

Homology

[Close]

BLAST of CmoCh11G018580.1 vs. Swiss-Prot
Match: GRP1_TOBAC (Glycine-rich protein OS=Nicotiana tabacum GN=GRP PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.6e-09
Identity = 50/106 (47.17%), Postives = 60/106 (56.60%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATME-TNGVEDAKYGGYDRGYR 60
           M SKAF+FLGL  AF  LISS V A +LA TS    N   ++  NGV+    GGY+    
Sbjct: 1   MGSKAFLFLGLCLAFFFLISSEVVAGELAETS----NPMKLDGENGVDVDGRGGYNDVGG 60

Query: 61  RGRYDHGGHDGHGHGGYR---CRHGWCR------YRCCSYAGEVVE 97
            G Y  GG  G G GGY+   CR+G CR       RCCSYAGE ++
Sbjct: 61  DGYY--GGGRGRGGGGYKRRGCRYGCCRKGYNGCKRCCSYAGEAMD 100

[Close]

BLAST of CmoCh11G018580.1 vs. Swiss-Prot
Match: GRP7_DAUCA (Glycine-rich protein DC7.1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.8e-06
Identity = 42/93 (45.16%), Postives = 49/93 (52.69%), Query Frame = 1


Query: 1  MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKYGGYDRGYRR 60
          M SK F+ LGL  AF LLISS VAA DL+ T        T E   ++   +GG   G+  
Sbjct: 1  MGSKIFLLLGLSIAFALLISSEVAARDLSET--------TTEGASLDGGHHGGGGGGHYS 60

Query: 61 GRYDHGG--HDGHGHGGYRCRHGWCRYRCCSYA 92
          G   HGG  H G GHGG  C H +C   CCS A
Sbjct: 61 GGGGHGGSHHGGGGHGG--CHH-YCHGSCCSAA 82

[Close]

BLAST of CmoCh11G018580.1 vs. TrEMBL
Match: A0A0A0K6L7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037600 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.6e-25
Identity = 75/119 (63.03%), Postives = 82/119 (68.91%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGLL AFVLL+SS VAA DLA TS+K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 80  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 138

[Close]

BLAST of CmoCh11G018580.1 vs. TrEMBL
Match: A0P8W6_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus GN=CsGRP1 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.6e-25
Identity = 75/119 (63.03%), Postives = 82/119 (68.91%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGLL AFVLL+SS VAA DLA TS+K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 61  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 119

[Close]

BLAST of CmoCh11G018580.1 vs. TrEMBL
Match: A0A0A1IXP4_CUCSA (Glycine rich protein OS=Cucumis sativus GN=GRP PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.5e-24
Identity = 74/119 (62.18%), Postives = 81/119 (68.07%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGL  AFVLL+SS VAA DLA TS+K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 1   MSSKAFVFLGLFLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 61  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 119

[Close]

BLAST of CmoCh11G018580.1 vs. TrEMBL
Match: A0A0A0K1B1_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus GN=Csa_7G037590 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.9e-14
Identity = 57/86 (66.28%), Postives = 63/86 (73.26%), Query Frame = 1


Query: 1  MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY--GGYDRGY 60
          MSSKAFVFLGLL AFVLL+SS VAA DLA TS+K +N  T+ETNGVEDAKY  GGYDRGY
Sbjct: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEVTVETNGVEDAKYGRGGYDRGY 60

Query: 61 RRGRYDH---GGHDGHGHGGYRCRHG 82
            G YD    GG+D    GGY   +G
Sbjct: 61 -GGGYDRGYGGGYDRGYGGGYDRGYG 85

[Close]

BLAST of CmoCh11G018580.1 vs. TrEMBL
Match: Q7Y087_PANGI (GBR5 OS=Panax ginseng GN=GBR5 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-12
Identity = 60/119 (50.42%), Postives = 69/119 (57.98%), Query Frame = 1


Query: 2   SSKAFVFLGLLFAFVLLISSNVAASDLAH----TSAKNENVATMET----NGVEDAKY-- 61
           S+KAF+ LGL  A VLLISS VAA +LA     T+ KN   AT++     NG     Y  
Sbjct: 3   SNKAFLLLGLSLAIVLLISSEVAARELAEAQTTTTNKNTEAATVDGRSGYNGYGGGGYHG 62

Query: 62  -GGYDRG--YRRGRYDHGG---HDGHGHGGYRCRHGWCRYRCCSYAGEVVE----GAKP 101
            GGY  G  Y  G   HGG   H G GHGG  C HG+CRYRCC+YAGEVV+    G KP
Sbjct: 63  GGGYHGGGGYHGGGGYHGGGGYHGGGGHGGGGCSHGYCRYRCCNYAGEVVDAETTGVKP 121

[Close]

BLAST of CmoCh11G018580.1 vs. NCBI nr
Match: gi|659110968|ref|XP_008455506.1| (PREDICTED: cold and drought-regulated protein CORA-like [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 2.9e-26
Identity = 76/118 (64.41%), Postives = 83/118 (70.34%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY-GGYDRGYR 60
           MSSKAFVFLGLL AFVLL+SS VAA DLA T +K +N AT+ETNGVEDAKY GGYDRGY 
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNEATVETNGVEDAKYGGGYDRGYG 60

Query: 61  RGRYDHGGH--DGHGHGGY---------------RCRHGWCRYRCCSYAGEVVEGAKP 101
            G Y  GG+   G+G GGY                CR+G C YRCCSYAGEVVEGAKP
Sbjct: 61  GGGYGRGGYGRGGYGRGGYGGRGGYGGGRGGYGRGCRYGRCGYRCCSYAGEVVEGAKP 118

[Close]

BLAST of CmoCh11G018580.1 vs. NCBI nr
Match: gi|700188223|gb|KGN43456.1| (hypothetical protein Csa_7G037600 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-24
Identity = 75/119 (63.03%), Postives = 82/119 (68.91%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGLL AFVLL+SS VAA DLA TS+K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 80  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 138

[Close]

BLAST of CmoCh11G018580.1 vs. NCBI nr
Match: gi|525507336|ref|NP_001267708.1| (glycine-rich protein-like precursor [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-24
Identity = 75/119 (63.03%), Postives = 82/119 (68.91%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGLL AFVLL+SS VAA DLA TS+K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 61  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 119

[Close]

BLAST of CmoCh11G018580.1 vs. NCBI nr
Match: gi|704849882|emb|CEG62450.1| (Glycine rich protein [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 3.6e-24
Identity = 74/119 (62.18%), Postives = 81/119 (68.07%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGL  AFVLL+SS VAA DLA TS+K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 1   MSSKAFVFLGLFLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 61  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 119

[Close]

BLAST of CmoCh11G018580.1 vs. NCBI nr
Match: gi|700188222|gb|KGN43455.1| (Cell wall glycine-rich protein [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 57/86 (66.28%), Postives = 63/86 (73.26%), Query Frame = 1


Query: 1  MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY--GGYDRGY 60
          MSSKAFVFLGLL AFVLL+SS VAA DLA TS+K +N  T+ETNGVEDAKY  GGYDRGY
Sbjct: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEVTVETNGVEDAKYGRGGYDRGY 60

Query: 61 RRGRYDH---GGHDGHGHGGYRCRHG 82
            G YD    GG+D    GGY   +G
Sbjct: 61 -GGGYDRGYGGGYDRGYGGGYDRGYG 85

The following BLAST results are available for this feature:

BLAST of CmoCh11G018580.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GRP1_TOBAC	5.6e-09	47.17	Glycine-rich protein OS=Nicotiana tabacum GN=GRP PE=2 SV=1	[more]
GRP7_DAUCA	5.8e-06	45.16	Glycine-rich protein DC7.1 OS=Daucus carota PE=2 SV=1	[more]

BLAST of CmoCh11G018580.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6L7_CUCSA	8.6e-25	63.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037600 PE=4 SV=1	[more]
A0P8W6_CUCSA	8.6e-25	63.03	Cell wall glycine-rich protein OS=Cucumis sativus GN=CsGRP1 PE=2 SV=1	[more]
A0A0A1IXP4_CUCSA	2.5e-24	62.18	Glycine rich protein OS=Cucumis sativus GN=GRP PE=2 SV=1	[more]
A0A0A0K1B1_CUCSA	8.9e-14	66.28	Cell wall glycine-rich protein OS=Cucumis sativus GN=Csa_7G037590 PE=4 SV=1	[more]
Q7Y087_PANGI	1.7e-12	50.42	GBR5 OS=Panax ginseng GN=GBR5 PE=2 SV=1	[more]

BLAST of CmoCh11G018580.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh11G018580.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110968\|ref\|XP_008455506.1\|	2.9e-26	64.41	PREDICTED: cold and drought-regulated protein CORA-like [Cucumis melo]	[more]
gi\|700188223\|gb\|KGN43456.1\|	1.2e-24	63.03	hypothetical protein Csa_7G037600 [Cucumis sativus]	[more]
gi\|525507336\|ref\|NP_001267708.1\|	1.2e-24	63.03	glycine-rich protein-like precursor [Cucumis sativus]	[more]
gi\|704849882\|emb\|CEG62450.1\|	3.6e-24	62.18	Glycine rich protein [Cucumis sativus]	[more]
gi\|700188222\|gb\|KGN43455.1\|	1.3e-13	66.28	Cell wall glycine-rich protein [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010800	GRP

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh11G018580	CmoCh11G018580	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh11G018580.1	CmoCh11G018580.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G018580.1.three_prime_UTR.1	CmoCh11G018580.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G018580.1.CDS.2	CmoCh11G018580.1.CDS.2	CDS
CmoCh11G018580.1.CDS.1	CmoCh11G018580.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G018580.1.five_prime_UTR.1	CmoCh11G018580.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G018580.1.exon.2	CmoCh11G018580.1.exon.2	exon
CmoCh11G018580.1.exon.1	CmoCh11G018580.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010800	Glycine rich protein	PFAM	PF07172	GRP	coord: 1..82 score: 7.6