CmoCh11G012780.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G012780.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Nucleic acid binding / zinc ion binding protein
Location	Cmo_Chr11 : 8433880 .. 8436071 (+)
Sequence length	917

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATAAGAGAGGTGAATCCTTGCATTTTGTTGTTTGATTTGGAGGAAGAAGAAGAAGAAGAAGAAAAAGAAAGGAGGAGAAGAAAGAAGATGCCTCTCGGAAAATATTACTGCGACTACTGCGAGAAGCAATTCCAAGACACTCCGTTTGCTCGAAAGCGCCATCTTCAAAGCCTCTCCCATCACAAGGCCAAAGCTCTCTGGTTCGACTCCTTCAGAGGTGAGGTCCTCCTCCTCCGTCTCTCCGCTTTCTCCTCTTCCCCTCATATCCTCCTCCTCTCTTCCTAACTCTCTCTTCCTCTTCCTCTTCCTTGCAGACTCCAATCAACCTCTCTCTCATGCCTTTCCAACACGCCTCTGTAACCGATTCCTCACTACGGTATATTCTTCTTTCTATTTAACCTACCTTTTGCTCTTTCCGATTTCATTCTTTGCTCTCCACGATTCCCAAGGGCTTTTGCCAGTACGGTGATTCTTGCAACTATTTTCACTCCAACAACAATCCGCAGTACTCGAGTTCGCACCCCATTGCAGGTTAACCCTAAACTCTACCTTACTCTATCTCAACAACCCAATGCAAAATTCGAAACCTAATGCTATTTATTTCGATCCATTTCCGGTCTGATTCCATATAAAAATCACAGGTTTTCCGGAGAATAATCAAGCCCCAAATATTCCGGTGAATCAATTCATGGAGGGCAGTTCGTTGACAGGTAACTTGGAACTGAAATCATCACATAGTTTTGTGTTCCATATTTTATTTGTTCATTCATAAAATCCTGATGTTGGTTAAATTTTGAGTGGATCATTACATACATCATTTACGGGAGCAAATTGCCGCCCACTCATACGAATGATGACCAACCAACTCCCATCTCCGCTCGATTTGAACAGGACTTGAACTCTCTTAGTGCTTGTTGTGCATCTGCAAATCATTCTTTGTTTGAACAGCATCCATCATTGTTTTTTTGTATCTGTAAAGCATTCTGCGTTCTGCTACACATTTGAATCTTTTATCCCAGGATTTGATGGCCCTCTAATCTTTCATATTTTTCAACTTTCTATGCTTGCGTTTGATCTCAGGTAGTTTAGATAGATTGAGAACATCATGGGGAAATTTACCTCCATCATTGATGCCTCCTCCAGAGGGTGGTTACCCACCTCTCCCTTTTGTAGATTGGGGATAATCCACGAATCAGTTACTGGTACAAGTCTACTCGGCTTCTCTTGTTTTTAACCTCCTACTCTATATAAAGCACCAATTTCATCAAATTTGGAATCCTACACATCTAGACTATGAGCCTTTCATTGCTTTCCTTTCAAGTACCATATTCTTCAACACATGACTGTCTTTAACTTGTCCTCTGTTAATGTTTTACCATTTAGTTGCACCACTTATGTGGAGATTATGGTGCTCTAAACTCGTTCGAGATCGACACTGACATAATGTAATATGAGGAGAGTTAATGAAGCAAATAAAAGAACACCTAATTCCAAGATCTTTTCACTGGCAAACTCAACATTTCATTCATAAAACAGGCATGGTCAGTTCCAAATGTTGTTGATCTCGACAGAAATGAGTACAAAGAACATATGAATGCCTTTTCGGGCTACATATATTAGCCCCCCTTGTATAGCATATCATTATTTATTTCATTCAAGCATCTTGACAAGCAGGAATCACCCCAATACTATACATTGGTTGCCTAATAGCTTGATGCCAGAACCTGTAACAAGGAAGCAATAAATTGCATCTGGGTGTCTTCATCTATGGTTTCGAATAGAGGGACATGAACAAATAGTGATTTGATGCCATTCTCTTGGGCGCAGCGGAGGGAATGATAGTAGACATAATTGCACACAAAGCGACCAGCATCGTTTGAAGTCATCACTTCATATCCCTTCTTCGCCAATGCCTTGGTTATTTCCTCCACTGGAAGAGAAGTCTGCAGGGCAGAGATGGGTAGTAAAGGAATCAGGAAAAAAAGAAGAGAGAAAACTTTCATGATTTGCATCAAGAGTTAAGAACCAGCAAAAAGGTGCTATAGTTTCTATAAGTTTATGGTTATGCCTTTGCAATCTTCTTCGATTAAATTCAACTTGTTACAATGTTTCGATGTTGTGACACAATGAGATGTGATTATGTAAACAAGTACATTATTTAAAATTACATTTCAATATTTTCACCC

mRNA sequence

ATGGGTATAAGAGAGGTGAATCCTTGCATTTTGTTGTTTGATTTGGAGGAAGAAGAAGAAGAAGAAGAAAAAGAAAGGAGGAGAAGAAAGAAGATGCCTCTCGGAAAATATTACTGCGACTACTGCGAGAAGCAATTCCAAGACACTCCGTTTGCTCGAAAGCGCCATCTTCAAAGCCTCTCCCATCACAAGGCCAAAGCTCTCTGGTTCGACTCCTTCAGAGACTCCAATCAACCTCTCTCTCATGCCTTTCCAACACGCCTCTGTAACCGATTCCTCACTACGGGCTTTTGCCAGTACGGTGATTCTTGCAACTATTTTCACTCCAACAACAATCCGCAGTACTCGAGTTCGCACCCCATTGCAGGTTTTCCGGAGAATAATCAAGCCCCAAATATTCCGGTGAATCAATTCATGGAGGGCAGTTCGTTGACAGGTAGTTTAGATAGATTGAGAACATCATGGGGAAATTTACCTCCATCATTGATGCCTCCTCCAGAGGGTGGTTACCCACCTCTCCCTTTTGTAGATTGGGGATAATCCACGAATCAGTTACTGCGGAGGGAATGATAGTAGACATAATTGCACACAAAGCGACCAGCATCGTTTGAAGTCATCACTTCATATCCCTTCTTCGCCAATGCCTTGGTTATTTCCTCCACTGGAAGAGAAGTCTGCAGGGCAGAGATGGGTAGTAAAGGAATCAGGAAAAAAAGAAGAGAGAAAACTTTCATGATTTGCATCAAGAGTTAAGAACCAGCAAAAAGGTGCTATAGTTTCTATAAGTTTATGGTTATGCCTTTGCAATCTTCTTCGATTAAATTCAACTTGTTACAATGTTTCGATGTTGTGACACAATGAGATGTGATTATGTAAACAAGTACATTATTTAAAATTACATTTCAATATTTTCACCC

Coding sequence (CDS)

ATGGGTATAAGAGAGGTGAATCCTTGCATTTTGTTGTTTGATTTGGAGGAAGAAGAAGAAGAAGAAGAAAAAGAAAGGAGGAGAAGAAAGAAGATGCCTCTCGGAAAATATTACTGCGACTACTGCGAGAAGCAATTCCAAGACACTCCGTTTGCTCGAAAGCGCCATCTTCAAAGCCTCTCCCATCACAAGGCCAAAGCTCTCTGGTTCGACTCCTTCAGAGACTCCAATCAACCTCTCTCTCATGCCTTTCCAACACGCCTCTGTAACCGATTCCTCACTACGGGCTTTTGCCAGTACGGTGATTCTTGCAACTATTTTCACTCCAACAACAATCCGCAGTACTCGAGTTCGCACCCCATTGCAGGTTTTCCGGAGAATAATCAAGCCCCAAATATTCCGGTGAATCAATTCATGGAGGGCAGTTCGTTGACAGGTAGTTTAGATAGATTGAGAACATCATGGGGAAATTTACCTCCATCATTGATGCCTCCTCCAGAGGGTGGTTACCCACCTCTCCCTTTTGTAGATTGGGGATAA

Homology

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BLAST of CmoCh11G012780.1 vs. Swiss-Prot
Match: C3H3_ORYSJ (Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=Os01g0252200 PE=2 SV=2)

HSP 1 Score: 168.3 bits (425), Expect = 7.6e-41
Identity = 88/168 (52.38%), Postives = 104/168 (61.90%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSN--------QPLSH- 91
           MPLGKYYCDYCEKQFQDTP ARKRHL    HH+A+ALW+D+ R            PL H 
Sbjct: 1   MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGAPPLLHQ 60

Query: 92  --AFPTRLCNRFLTTGFCQYGDSCNYFHSN---NNPQYSSSHPIAGFPENNQA------P 151
             A    +C  F+ TG C++GDSC YFH      NP  + S P++G P   Q+      P
Sbjct: 61  PGAAAIGVCQHFVRTGTCKFGDSCRYFHPKPPPANPGPAPSGPVSG-PMAQQSNIQGSQP 120

Query: 152 NIPVNQFMEGSSLTGSLDRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           N    Q  +GSS +G++    TSWGNLPPSL PPPEGGYPP PFVDWG
Sbjct: 121 NFVGYQAADGSSFSGNILGGHTSWGNLPPSLRPPPEGGYPPFPFVDWG 167

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BLAST of CmoCh11G012780.1 vs. Swiss-Prot
Match: ZMAT5_HUMAN (Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.9e-18
Identity = 56/167 (33.53%), Postives = 81/167 (48.50%), Query Frame = 1


Query: 36  KYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNRFLTT 95
           +Y+CDYC++ FQD    RK+HL  L H KAK +W+D FRD+   L      R C +FL T
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLT 63

Query: 96  GFCQYGDSCNYFHSNNNPQYSSSHPIAGFPENNQ----APNIP---VNQFME------GS 155
           G C +G +C + H +       S  +       +    AP +P   +  ++E       S
Sbjct: 64  GQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRLSS 123

Query: 156 SLTGSLDRLRTS-------W---GNLPPSLMPPPEGGYPPLPFVDWG 180
           + +   + +RT+       W     LPPSL  PP GG+P  P V WG
Sbjct: 124 APSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG 170

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BLAST of CmoCh11G012780.1 vs. Swiss-Prot
Match: ZMAT5_BOVIN (Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.0e-18
Identity = 55/167 (32.93%), Postives = 81/167 (48.50%), Query Frame = 1


Query: 36  KYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNRFLTT 95
           +Y+CDYC++ FQD    RK+HL  L H KAK LW+D FRD+   L      R C +FL T
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRPCRKFLLT 63

Query: 96  GFCQYGDSCNYFHSNN------NPQYSSSHPIAGFP-ENNQAPNIPVNQFME------GS 155
           G C +G +C + H +       + Q         +P +  + P + +  ++E       S
Sbjct: 64  GQCDFGSNCRFSHMSERDLQELSVQVEEERRAREWPLDVAELPEVCLEDWLEKRAKRLSS 123

Query: 156 SLTGSLDRLRTS-------W---GNLPPSLMPPPEGGYPPLPFVDWG 180
           + +   + +R +       W     LPPSL  PP GG+P  P V WG
Sbjct: 124 APSSRAEPVRATVFQYPVGWPPVQELPPSLRAPPPGGWPLQPSVQWG 170

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BLAST of CmoCh11G012780.1 vs. Swiss-Prot
Match: ZMAT5_MOUSE (Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.8e-17
Identity = 55/167 (32.93%), Postives = 80/167 (47.90%), Query Frame = 1


Query: 36  KYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNRFLTT 95
           +Y+CDYC++ FQD    RK+HL  L H KAK +W+D FRD+   L      R C +FL T
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLT 63

Query: 96  GFCQYGDSCNYFHSNN------NPQYSSSHPIAGFP-ENNQAPNIPVNQFME------GS 155
           G C +G +C + H +       + Q         +P E  + P   +  ++E       S
Sbjct: 64  GQCDFGSNCRFSHMSEQDLQELSVQVEEERRAREWPLETAELPEGHLEDWLEKRAKRLSS 123

Query: 156 SLTGSLDRLRTS-------W---GNLPPSLMPPPEGGYPPLPFVDWG 180
           + +   + +RT+       W     LPPSL  PP GG+  L  V WG
Sbjct: 124 APSSRAEPIRTTVFQYPVGWPPMQELPPSLRAPPPGGWSVLSKVQWG 170

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BLAST of CmoCh11G012780.1 vs. Swiss-Prot
Match: ZMAT5_DANRE (Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.9e-17
Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = 1


Query: 36  KYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNRFLTT 95
           +YYCDYC++ FQD    RK+HL  + HH+AK  WFD+FRD+   L+      +C +F+ T
Sbjct: 4   RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLLNDERSKEVCRKFVQT 63

Query: 96  GFCQYGDSCNYFHSNNNPQYSSSHPI------AGFPENNQAPNIPVNQFME------GSS 155
           G C +G SC + H +          I         P+ + +    V++++        + 
Sbjct: 64  GQCVFGTSCRFSHMSEKQMKMLEQKIDDEKRQKEDPDQDGSSERSVDEWLSRREKKLAAL 123

Query: 156 LTGSLDRLR--------------TSWGNLPPSLMPPPEGGYPPLPFVDWG 180
            +G + R+                S  +LPPSL PPP GG+      +WG
Sbjct: 124 TSGRVLRMEEEECTENIEIPPYLLSIPDLPPSLHPPPAGGWRVTVHNEWG 173

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BLAST of CmoCh11G012780.1 vs. TrEMBL
Match: A0A0A0M1B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.3e-63
Identity = 120/156 (76.92%), Postives = 132/156 (84.62%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHA--FPTRLC 91
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSH KAKALWFDSF+D NQ   H+  F  R+C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 92  NRFLTTGFCQYGDSCNYFHSNN---NPQYSSSHPIAGFPENNQAPNIPVNQFMEG-SSLT 151
           NRFL+TGFCQYGDSC YFH NN   N   SSS+P+AGFPEN Q PN+PVN+F++G SS T
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 152 GSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           GSL  DRL TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

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BLAST of CmoCh11G012780.1 vs. TrEMBL
Match: D7UA82_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-49
Identity = 94/152 (61.84%), Postives = 114/152 (75.00%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNR 91
           MPLGKY+CDYC+KQFQDTP ARKRHLQ L H +AKALW+DSFRD NQ  +  +   +CNR
Sbjct: 1   MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQIQAEGYGKGVCNR 60

Query: 92  FLTTGFCQYGDSCNYFHSNNNPQYSS--SHPIAGFPENNQAPNIPVNQFMEGSSLTGSL- 151
           F+ TGFCQYGDSC YFH   + Q ++  S P+ GFP+N Q+ + P NQ + G  L G++ 
Sbjct: 61  FVRTGFCQYGDSCKYFHPKQSLQNTNTQSIPVTGFPDNIQSLSNPGNQLVGGGPLPGNVV 120

Query: 152 -DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
            D +  SWGNLPPSL PPPEGGYPPLPF+DWG
Sbjct: 121 KDSMGNSWGNLPPSLKPPPEGGYPPLPFLDWG 152

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BLAST of CmoCh11G012780.1 vs. TrEMBL
Match: M5WL08_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 9.3e-46
Identity = 87/150 (58.00%), Postives = 104/150 (69.33%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNR 91
           MPLGKYYC+YC+K+FQDTP AR+RHLQ L H +AKA W+DSF+D +   +      +CNR
Sbjct: 1   MPLGKYYCEYCDKEFQDTPSARRRHLQGLQHLRAKAQWYDSFKDPSHAYTEGLTKGVCNR 60

Query: 92  FLTTGFCQYGDSCNYFHSNNNPQYSSSHPIAGFPENNQAPNIPVNQFMEGSSLTGSL--D 151
           F+ TGFC YGDSC Y H  NN Q   +    G  +NNQ+     NQ + GSSL   +  D
Sbjct: 61  FVKTGFCPYGDSCRYLHPKNNQQNMVTQGAPGLIDNNQSSTFQENQLVGGSSLPDVVVRD 120

Query: 152 RLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
            +  SWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 SMGMSWGNLPPSLMPPPEGGYPPLPFVDWG 150

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BLAST of CmoCh11G012780.1 vs. TrEMBL
Match: B9I6N1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00620g PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-42
Identity = 92/155 (59.35%), Postives = 107/155 (69.03%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSH-----AFPT 91
           MP+GKYYCDYC+KQFQDTP ARKRHLQS SH +AK+LWF    +SN   S+      F  
Sbjct: 1   MPVGKYYCDYCDKQFQDTPHARKRHLQSSSHLRAKSLWFSRNSNSNTLNSNNTDAGGFVK 60

Query: 92  RLCNRFLTTGFCQYGDSCNYFHSNNNPQYSSSHPIAGFPENNQAPNIPVNQFMEGSSLTG 151
            LCNRF+ TGFC YGDSC Y H+N    +++S   A F +N Q+P +P NQ   GSS  G
Sbjct: 61  GLCNRFVKTGFCPYGDSCKYLHTN----FATSQGTA-FKDNVQSPTMPGNQLAGGSSFPG 120

Query: 152 SLDR--LRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
              R  +  SWGNLPPSL PPPEGGYPPLPFVDWG
Sbjct: 121 VAVRESMGMSWGNLPPSLKPPPEGGYPPLPFVDWG 150

[Close]

BLAST of CmoCh11G012780.1 vs. TrEMBL
Match: V4SWC1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012993mg PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.1e-42
Identity = 89/156 (57.05%), Postives = 106/156 (67.95%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNR 91
           MPLGKYYCDYC+KQFQDT FARKRHLQ + H +AKALW+DS  ++NQ     FP  +C+R
Sbjct: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSR 60

Query: 92  FLTTGFCQYGDSCNYFHSNNNPQYSSSHP---IAGFPENNQAPNIPVNQ---FMEGSSLT 151
           F+ TGFC +GDSC Y H  NNP  +S +      GF + N A +  V+Q      GSS  
Sbjct: 61  FVKTGFCPFGDSCKYLHPKNNPPQNSGNQGLRATGFTDIN-ARSSSVDQRIYLAGGSSFP 120

Query: 152 GSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           G +  D +  SWGNLPPSL PPPEGGYP LPFVDWG
Sbjct: 121 GDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPFVDWG 155

[Close]

BLAST of CmoCh11G012780.1 vs. TAIR10
Match: AT5G26749.2 (AT5G26749.2 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-34
Identity = 81/172 (47.09%), Postives = 96/172 (55.81%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDS--NQPLSHAFPTRLC 91
           MP GKYYCDYCEK+FQDT  ARKRHLQS  H +AKALW+ S      N  +S+     LC
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSSSSSDLVNPQVSNFATKGLC 60

Query: 92  NRFLTT-------------------GFCQYGDSCNYFHSNNNPQYSSSHPIAGFPENNQA 151
           NRF+T+                    FC +GDSC YFH NNN   +      GF  N Q 
Sbjct: 61  NRFITSVRRIDFVSLCSSFLAISGCNFCPFGDSCRYFHPNNNTGST------GFTNNTQL 120

Query: 152 PNIPVN-QFMEGSSLTGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
               +N Q ++GS+L       R  T W +LPPSL PPPE GYP LPF+DWG
Sbjct: 121 RVDMLNQQHIQGSTLNRDFVSGRPGTGWFDLPPSLKPPPEQGYPQLPFIDWG 166

[Close]

BLAST of CmoCh11G012780.1 vs. NCBI nr
Match: gi|659099282|ref|XP_008450521.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo])

HSP 1 Score: 256.9 bits (655), Expect = 2.6e-65
Identity = 123/157 (78.34%), Postives = 133/157 (84.71%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHA--FPTRLC 91
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSH KAKALWFDSF+DSNQ   H+  F  R+C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 92  NRFLTTGFCQYGDSCNYFH----SNNNPQYSSSHPIAGFPENNQAPNIPVNQFMEG-SSL 151
           NRFL+TGFCQYGDSC YFH     N+N   SSSHPIAGFPENNQ PN+P N+F++G SS 
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 152 TGSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           TGSL  DRL TSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of CmoCh11G012780.1 vs. NCBI nr
Match: gi|449435572|ref|XP_004135569.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 1.9e-63
Identity = 120/156 (76.92%), Postives = 132/156 (84.62%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHA--FPTRLC 91
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSH KAKALWFDSF+D NQ   H+  F  R+C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 92  NRFLTTGFCQYGDSCNYFHSNN---NPQYSSSHPIAGFPENNQAPNIPVNQFMEG-SSLT 151
           NRFL+TGFCQYGDSC YFH NN   N   SSS+P+AGFPEN Q PN+PVN+F++G SS T
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 152 GSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
           GSL  DRL TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]

BLAST of CmoCh11G012780.1 vs. NCBI nr
Match: gi|731415967|ref|XP_010659728.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinifera])

HSP 1 Score: 204.5 bits (519), Expect = 1.5e-49
Identity = 94/152 (61.84%), Postives = 114/152 (75.00%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNR 91
           MPLGKY+CDYC+KQFQDTP ARKRHLQ L H +AKALW+DSFRD NQ  +  +   +CNR
Sbjct: 1   MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQIQAEGYGKGVCNR 60

Query: 92  FLTTGFCQYGDSCNYFHSNNNPQYSS--SHPIAGFPENNQAPNIPVNQFMEGSSLTGSL- 151
           F+ TGFCQYGDSC YFH   + Q ++  S P+ GFP+N Q+ + P NQ + G  L G++ 
Sbjct: 61  FVRTGFCQYGDSCKYFHPKQSLQNTNTQSIPVTGFPDNIQSLSNPGNQLVGGGPLPGNVV 120

Query: 152 -DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
            D +  SWGNLPPSL PPPEGGYPPLPF+DWG
Sbjct: 121 KDSMGNSWGNLPPSLKPPPEGGYPPLPFLDWG 152

[Close]

BLAST of CmoCh11G012780.1 vs. NCBI nr
Match: gi|470132887|ref|XP_004302306.1| (PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 200.3 bits (508), Expect = 2.9e-48
Identity = 91/150 (60.67%), Postives = 110/150 (73.33%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNR 91
           MPLGKY C+YC KQFQDTP+AR+RHLQSL H +AKA WFDSF+D N   + +    +CNR
Sbjct: 1   MPLGKYDCEYCNKQFQDTPYARRRHLQSLQHLRAKAQWFDSFKDPNDAYAQSLGRGVCNR 60

Query: 92  FLTTGFCQYGDSCNYFHSNNNPQYSSSHPIAGFPENNQAPNIPVNQFMEGSSLTGSL--D 151
           F+ TGFCQYGD+C YFH  NN Q + +   +G  +N+Q+  I  NQ + GSSL   +  D
Sbjct: 61  FVNTGFCQYGDACKYFHPKNNQQNTITQGASGVTDNSQSSTIQGNQMVAGSSLPDVVVRD 120

Query: 152 RLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
            +  SWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 NMGMSWGNLPPSLMPPPEGGYPPLPFVDWG 150

[Close]

BLAST of CmoCh11G012780.1 vs. NCBI nr
Match: gi|595831527|ref|XP_007206291.1| (hypothetical protein PRUPE_ppa016420mg [Prunus persica])

HSP 1 Score: 191.4 bits (485), Expect = 1.3e-45
Identity = 87/150 (58.00%), Postives = 104/150 (69.33%), Query Frame = 1


Query: 32  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNR 91
           MPLGKYYC+YC+K+FQDTP AR+RHLQ L H +AKA W+DSF+D +   +      +CNR
Sbjct: 1   MPLGKYYCEYCDKEFQDTPSARRRHLQGLQHLRAKAQWYDSFKDPSHAYTEGLTKGVCNR 60

Query: 92  FLTTGFCQYGDSCNYFHSNNNPQYSSSHPIAGFPENNQAPNIPVNQFMEGSSLTGSL--D 151
           F+ TGFC YGDSC Y H  NN Q   +    G  +NNQ+     NQ + GSSL   +  D
Sbjct: 61  FVKTGFCPYGDSCRYLHPKNNQQNMVTQGAPGLIDNNQSSTFQENQLVGGSSLPDVVVRD 120

Query: 152 RLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 180
            +  SWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 SMGMSWGNLPPSLMPPPEGGYPPLPFVDWG 150

The following BLAST results are available for this feature:

BLAST of CmoCh11G012780.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
C3H3_ORYSJ	7.6e-41	52.38	Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=...	[more]
ZMAT5_HUMAN	6.9e-18	33.53	Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1	[more]
ZMAT5_BOVIN	9.0e-18	32.93	Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1	[more]
ZMAT5_MOUSE	5.8e-17	32.93	Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1	[more]
ZMAT5_DANRE	9.9e-17	30.00	Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1	[more]

BLAST of CmoCh11G012780.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1B0_CUCSA	1.3e-63	76.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560650 PE=4 SV=1	[more]
D7UA82_VITVI	1.1e-49	61.84	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00610 PE=4 SV=...	[more]
M5WL08_PRUPE	9.3e-46	58.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016420mg PE=4 SV=1	[more]
B9I6N1_POPTR	1.3e-42	59.35	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00620g PE=4 SV=1	[more]
V4SWC1_9ROSI	2.1e-42	57.05	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012993mg PE=4 SV=1	[more]

BLAST of CmoCh11G012780.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26749.2	1.9e-34	47.09	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of CmoCh11G012780.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099282\|ref\|XP_008450521.1\|	2.6e-65	78.34	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo]	[more]
gi\|449435572\|ref\|XP_004135569.1\|	1.9e-63	76.92	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis sativus]	[more]
gi\|731415967\|ref\|XP_010659728.1\|	1.5e-49	61.84	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 [Vitis vinife...	[more]
gi\|470132887\|ref\|XP_004302306.1\|	2.9e-48	60.67	PREDICTED: zinc finger CCCH domain-containing protein 3 [Fragaria vesca subsp. v...	[more]
gi\|595831527\|ref\|XP_007206291.1\|	1.3e-45	58.00	hypothetical protein PRUPE_ppa016420mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH
IPR003604	Matrin/U1-like-C_Znf_C2H2
IPR013085	U1-CZ_Znf_C2H2

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh11G012780	CmoCh11G012780	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh11G012780.1	CmoCh11G012780.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G012780.1.exon.1	CmoCh11G012780.1.exon.1	exon
CmoCh11G012780.1.exon.2	CmoCh11G012780.1.exon.2	exon
CmoCh11G012780.1.exon.3	CmoCh11G012780.1.exon.3	exon
CmoCh11G012780.1.exon.4	CmoCh11G012780.1.exon.4	exon
CmoCh11G012780.1.exon.5	CmoCh11G012780.1.exon.5	exon
CmoCh11G012780.1.exon.6	CmoCh11G012780.1.exon.6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G012780.1.CDS.1	CmoCh11G012780.1.CDS.1	CDS
CmoCh11G012780.1.CDS.2	CmoCh11G012780.1.CDS.2	CDS
CmoCh11G012780.1.CDS.3	CmoCh11G012780.1.CDS.3	CDS
CmoCh11G012780.1.CDS.4	CmoCh11G012780.1.CDS.4	CDS
CmoCh11G012780.1.CDS.5	CmoCh11G012780.1.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G012780.1.three_prime_UTR.1	CmoCh11G012780.1.three_prime_UTR.1	three_prime_UTR
CmoCh11G012780.1.three_prime_UTR.2	CmoCh11G012780.1.three_prime_UTR.2	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	G3DSA:4.10.1000.10		coord: 85..110 score: 2.
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 86..109 score: 3.
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 83..110 score: 4.
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 83..111 score: 14
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 83..112 score: 7.9
IPR003604	Zinc finger, U1-type	SMART	SM00451	ZnF_U1_5	coord: 34..69 score: 0.
IPR013085	Zinc finger, U1-C type	PFAM	PF06220	zf-U1	coord: 36..67 score: 1.
None	No IPR available	unknown	Coil	Coil	coord: 12..32 scor
None	No IPR available	PANTHER	PTHR16465	NUCLEASE-RELATED	coord: 33..179 score: 3.3
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 35..91 score: 7.14