CmoCh11G012040.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAATCTGGAAGAGAGCAAAGCAAAGCGAAATAACTTTTGTTGAGACAGAGAGAGAGAGAGACAGAGAGAGACAGAGAGGTCCAGAGGATGAGTTGTTCTTCATCTTTATCCCTCTGCTGCGTCTTCTTCCCTTTCCCCTCTCCTTCCCCTTCTCTTAGATTCATTAACATTTCCAATCCCTTCTTCTTCCCAAGCCCTAATGGACGCCGCCGCCGCCCTCCTCCTACTTCTCTCCATTCACCTCTGGTAACTTCTCCCTCTCTATTTCCGCATACGCTTTTCTTGTTTTCTTTTATCTCTTTCTTTTATGTTTTTCCATTTTCCTGCTCTTGTTGTTGTTGTTGTTGTTGTTCTGTTCTTGTTTTGTGGCTGACGGGATTTTGATTGCTTTGTCTTGCCAAATGTCTTGTTCCAATGAATGACTCTCCGTACTTGCCAGAATTATGTAGGTTTCTTTACGAATTTTGCGTTATTTACTTGGAGGTACTCGTCTTTTTGTGTTTATTATGCTCAAGAAGTTCGTTGGTTTTTTATGCCCTAAAATTGTAGCAAAGAAAAGAAGATGCGTGATTATTGAGAAATAGAGAGGATTATTTGCTAGATATTGAAATTGATTGTTGAGAGCAGTTGTTTATCAACTGTTGAAGACGACGGGTAGGTAATCTGGAGTTCGCTTCATACAAACGATTTTTCTTCAATTTAAACCCTAACGTAATTGTAAAGTGGGTTTAGGATATTCATTGGTGCTCCTGGGGTTGGTTGAGTGCCGATTACAAATCGAATGTATGGAACTACAGCAATGACAGTTGAGAAAAGATGATCCTGTGCTTTTCACTCTTTCTTCAAAGGGCATATCACCCCAGAAAAATTACACCAAAAGGGCAGGGAAGCATTAGACCCTTGAGATCCCAAAAGAAATGGTTTGACTTTCTTCGGGTGTTTCCAAATCATATTGTAAAGAAGATAACTCTCACTCTTCCCCTTGATCCTCAAGTCTATAAGAAAAGAGCTCACTTAGCTGCCATCCAGATCTCATCCAAGTCCAATGATTGACGAGTTTGTTAGGTTGGAAATCTGCCAAAATATGAGATAGGATGCCCTTCAAGAATGTCATCATCCTTGTGACTTTTCCTTATGCCAAGATTCCAGCTTCTGTTTGAAGAAATCTACGGGCTTTTGATGGATGATACTTTTTGGCTTGGTAAAGAATGAAGTCTCATAATTGCTTTAGCAAAAGGCACAATGTCCTACTAAAGATCTTCCCAAAAGTATGTTGAAGAGCCAAAGCCTACTGCCACTTTCATTTTGAGCAAATGAGGTTTTTGAGCTTGAGAGTATCTTTCCAAGAGCCTTTTGGAGAATGAAGAAAGAGTGTCCGACCTTTTTTCCAAAATTGGAAGCCAAATTTTTCCTCAATGATCTTCCTCCAAACGTATGTTGAAGGTTTCTCGTTATTTTTTTTTTAAATAAAGAAAGATATATTTATCAAAAGAGAAACAACCCAAGGACGAAGGGGCAAGGAGCTCCCTCCCACAAAAACTAATGAAGCACTGCCTCCCAATTCTTTTGTAACAAGTACTATAGTTGCAAAAGAATTTATTGTTTCTAGAACACTGCAAATAAAATGTAATTTGTACACTATTACAAAACAAAACATAAGAATTGGGCCTATCCTTAAAGATTCTCCTATTTCTTTCCTACTGAATCTCCCGAACAAGCGCCCGAGCAACACATCTCCACAAAAAAAACAATTGCCTTGCCCTTAAGCTTCTAGCCATTAAGAGCTTCTACCAACCCCTCATTCCAACTTCTAAGGACGACACACTACGACCAAAAGCTTTAAGGCACTGATCTCTCCCTCTCCCTGCAAAGTGGCAACTAAGAAAAACCTTGAACTGTTTTTATCTAGAGCATAGCAAAACCTTGAACTGTTAATTTCGTTAGTAGACTTGATAAGTTGATGAAATAGGCATCTCCTTTAGGGTTCTGTTTTAACAGCGACAATAAATATGGGGTCGCACATGTCAAATTTTATATGAAAGAAAGAGGGGAAAACATGGAAAAATGCACTTAGTTGGATATAGTTTCTAATAATAATTTACACTTTGGGATGGATTAACTCATAAACTATCACTAACGTTATAACTAGCAATCTGGAAATTTGCATCCAAACTCAACACATTGTCATCCCTTGAGCAAGTGCTCTATTAGATAGATGATATCTGTCTTTCTCAAAACTGATAGTTACTTAAGCCGTCCAAACAATTGTTTTGTCTTCTACATAATTGTAAGACAACCACTAGTTCATAAAATCAAAAGCAAGGAAATTTCATGATTCAACAAGATTCTGGAGAAAACATCCAACTTCTGAGGGGAAAAGATCCTAAAACTGTCAATTTCTTTCATCCTTTTCCTAATGCATGCCGCACATGCATTCATTTTGACAGTTTGTCCCTTTTTTCTATTAGTTTTTTTTGGTTGGATAAGCAGAGTTATGAAGAGAGGAAGGAAACTTCCAACCACCCATGGTGGATTACAAAAATGATCACCAATCAGCCCAAAGATCAATGATTCGATCCTACACCCCGCTATCGTTGAACTCAAAAAACAAACAATATATTGCCAAATAGAGACTTGAGACATAATCAAATAATCTTTAAATTTTGATGTTCATTTGCACAAATAAAAAGTAGAAAAGGGATGGTATCGGTAACACTAAGAAAATTAGTCTCCAAACCATGAAAACCTGATTATTTGGTGCCACAAACTCCACAAAAAAGGCCTAGTTATGGACCACCAGAGCAACTTCTTGGTCTTCTTAAAAGGATGATGCACAAAGGAGATTCTTTAAGTGGGTAAACTATTTTCTATTACTAGAATAGACTTCCACAACGATTGGGCAAGAATTTTTTAAACCCTTAACTGCTGGAGGAGTTTCACTATTTATCCCTTCCTCCCTAATAAAGCCCTTTTGTTGTGTCCCACGACAAGTATGCAAGGCTATGAGCCACAAATGTAGGGTGGATTACTTTTGGAGCCTTTAAAATGAAGTTAGAAAGATGGGACCCCTTTGAGGCGCAGGAGAACTACAGTGGTCCCCTCTTACGGGGATTGGATAAATTTCAGAAACATTCCCCTGCATTTATGGAGCCGAGCCACATTCAAGGCAATAGGTGATTGCTTTGCGGTCTTGTGGACTGTGCAGATCAAAACTCTTCCCTCATTGAGTGCTTAGTAGTTGCTATTAAGTGGACTGTGCAGATCAAAACTCTTCCCTCATTGAGTGCTTAGTAGTTGCTATTAAAGTGCAAGGGAATTACTGTGGATTCATCCTCGCTGAAGTGAAAACTTCTTAATAGAGACCAGGTGTTTTCCACCCATGTGAGTACGCTCCAATTTGGCTGGTTGTTGGCCAAAAAGAAAGTTGAAGTTCATGGTGGGTTTTCATCTGAAGCAGCCACAAGGTCAGGTCCTAACTCGATAGATTTGTGGAGGTTAAGGGAAGATTTCTTTTACCCATCAGACACTATTTTTTTACCCGGAGAAGACTGCTTGCACACCCCCCATGACTATTAAGGTTAAGGGGAGAGGTTTCAGGCTTTAGCCCAAATTTGAATCACATGCCTAATAGGACTGCTTGCACACCCCCCATGATAGTCTTCCCTCAAGCTTCACACGAATGTAGACACCACTGCCAGGCAAAGTAGTAGCAGTCCTTTGCATTAGTGGGCCTTTCCAGATTTGTCCTCTAAATTCAAAAAGCAGACAGATGGAGGAAAGGGCAAAATCAGTTGAATTTGTGGAAGATTTAGAGACAGATCCTAGAAAGTCATTTCTGAAAAGAAGAAAGGGGAAATTTTGCTCTATAACCAATACCCAGGCTGAGTTTTCTAATAAACCATTTGGAAAAGCTAGGTGATTAAAAAGATATGTTCTCCGAGGTTTCTATTTCCAGCCAAGAAGAGGGCAGAGAGGTAGAGGATTGCATAGAGATCCCTGAGAATTATCAGGTTTGTTTTCAAGGAAATGACGTTTTCCCTTTATCAAAGATAAATTACAGATGTTGTTATATTTTTTTTTCTATAAAGTTCAGTAGTTGACCCATTCATAAGATAAATTTATATTCATTTTGAACAGTAACAAAGTCAACTTTCATTAATGAATATACAAAAGAAAAGGAATGACAGTCTCATCTCCTGGACTTCTGAAGTACGACAAATTCTTCCAATTGGATCATAAAGAGGAAATGAAGGGCATAATCACAAAAAGTGGGGAGCTATTTACACCATGAGAAGGGAAAAAAAAAAAAAAAAAAATCAGATTCTCTATGAAACTATCCAAAATTTAGTGTCAGAACATGCAATTTGTTCCTTTTTAGCAATTGGTCCCAAAACACCTTTCTTTTCTTAAAAAGTATTAACATAATTTTTTTCTTCGTTATTATTATTTGTTGATTGTTGCGGATGGCTGAGGATTTTACCCATGCATTGTCAAGATCCAAAAACTATGGCTGAAAATATTGAATTTTGATCGAATATGGTTGACACAGACCTAATCTTAGTTGTCAATCAACCATGGTTATACTTGTAGTTCTAGCAAGAACATAATTCTAGAACAACTTTTATGGAATCGAACTTATCCATTATACCATCTAAATGCTGATGTCATGTAAATATTTCTAGTGTAGATTAATTTGTTTGCATGGCGTGTTTTAGGTATCAAAGTTGATAACAACTTGTGATTAACTTGGTATTTTCTGTAATTGATTTGTCCTTGATGACTTATGATGATTAGTCAGCTTCATAGATCTTTGCATCTGTCATTTGCAATGCCAATCATTGATTCTCTTTTGGAACATTGATGCTCTTATCTTGTTAGGTTATCTGAACAGATTTTTATTCCCAGTTGACTTGATTCACTTCAACCTTCTAATTGGAACTTTTGTTCAGTATTGATACTATTTTAGAGTTGGCATGGATAAAATAGCGAGTTTCTACTTCACCACATTTGTGGGCAGTTGGTTTTCACTAATGATTTACTATCAGGGGATCTTTTTTATGTACTGGTTATAGTGCATCCAAGGGCATATAAAAGGAGATAAAGATGGAGATAGTTACGTGCATCAGACGAAGAATACAACGCAGATGTTTGGATTTGGGTTTAATGATGAGAAGACGGGCACTCAAATTCCAACCCAGGCTCAGTCCATAGTGGAAGGATCAGGATCAGTTATGGTGACTGAGTTCAAACCAGTTCCTGATGTTGATTATCTACAGGTGAGTGATAAGATACGATCATTTCGAATACTTATGTTGGATGTTGGCCATCTCCTAAAAAAAGATGATTAAAAGGAAAATGGACTATATTTTTCTTCCAATGCATTTCGAATCTGAAGTTTTTTTTCCTGCATGACTTGAGCATTTGCAAATGTTAGAATTTCCTGAGGAAGTAATTCTTTTGGGTGACCTTTTATAAAGCTTTAAGTCTTAGCTCTTAGTGCCCACAATTTCTCGATTTCAATGCTTGCGTGAAGCTCCTTTCAAGTCACAATGTGTTTTTATTTTCACAGGAGTTATTGGCCATTCAACAACAAGGTCCTAGATCCATTGGTTTCTTTGGAACTCGGAATATGGGTTTCTTGCATCAAGAACTCATCGAGATTCTTAGCTATGCAATGGTTATAACGGTAGGATATGTGGTCTAATGTCAATGATTATACTGAAGGGCTATTTGGTTTTTGATGAGTACATAAACTTCATATTGCTTGATAACTTCTGTATGCAGAAAAACCACATCTATACTTCAGGAGCATCTGGAACCAATGCAGCAGTTATCAGAGGTGCATTGAGGGCTGAGAAACCAGAACTGCTTACTGTCATTCTGCCACAAAGTTTGAAGAAACAACCTCCTGAGAGCCAGGAACTATTGTCCAAAGTAAGTTTGTTGATGAGTTCAATTGGGTTGGTGGTCTGTTATGTTCATTTAATTATTTATCTATCATGATTATCTTGGCATTTGTAGGTTAAGAATGTGATAGAGAAGCCCTACAACGATCATCTACCTTTAATAGAAGCTAGCAGGTAGCTTTGCGTGTAAATGTATTATCACATTGTTTTAAAAAAAACCCTTATTTCTGCTATATTCATGATCGTTCATGAAAGTCGTCGTAAAGTTATTTTCCAACGACATACCTCAGGTTGCAACACAAGTTAAAATCAAATGAGATAATGGAATTTTGGTGTATCTTTGCTTGTAAATGTATATCATTACATTGTTTTCAAAATGTTTCAAGTTTGAATGTTCCATCTAATGCCTTTGTTGAAAGTTGCAGGTTATGCAATATGGACATCATTTCGCATGTACAGCAAGTCATTTGCTTTGCATTTCATGATAGTAGGTTGCTCATGGAAACTTGTCAAGAGGCAAAAAATCTCCGAAAAATCGTTACCCTTTTTTATCTCGACTAAGAATAAGAAGAAACTTCTCCAAATTCTGTAAATACATTGTTTGACAGAGATTATTACATATTTTCCCTAATTTTGCTTGTAAAGTTGCTGCTCCTGCCTGCTCAAAGAGGGCCAATTTCCCTTTCCAAACCTTACTGTTCAAATCAGGAATTCTGCAGTGGTAAGTACATTTACAGATTAGAATTCTCAAAAATTTTCAGATCAAGATTTATGAGGAGGAATGTTTTGAGTTTGTGTTTGGTAAATGAGAAAGTTGGTGTTCATAAAACGTTTAAAGCCTAAAACGTCTGTGGGTATTGATATCATCCAATTGAGTAGTTCTTAATGATAGATAAATGGAAATAAAGTTACAATGCTTTTACGAAAACACAATGCATTTATTTGCTTGTTCTAATGAAAGGGGCATTGATATCAAAACTTTCAAGTCTAAAACCAAATAGAGATGAATTGTCGCGACAACCATAAAAAAAAAAAAAACAAAACAGAACACGTTAGGCTATAGTGTTTTCATTAGAAGAATGTAAACACAAGAAAAGGAGAAAAACTCTTGCTGTGCCAACGTAGAACGAACACTGAGAAATAA AAAATCTGGAAGAGAGCAAAGCAAAGCGAAATAACTTTTGTTGAGACAGAGAGAGAGAGAGACAGAGAGAGACAGAGAGGTCCAGAGGATGAGTTGTTCTTCATCTTTATCCCTCTGCTGCGTCTTCTTCCCTTTCCCCTCTCCTTCCCCTTCTCTTAGATTCATTAACATTTCCAATCCCTTCTTCTTCCCAAGCCCTAATGGACGCCGCCGCCGCCCTCCTCCTACTTCTCTCCATTCACCTCTGTGCATCCAAGGGCATATAAAAGGAGATAAAGATGGAGATAGTTACGTGCATCAGACGAAGAATACAACGCAGATGTTTGGATTTGGGTTTAATGATGAGAAGACGGGCACTCAAATTCCAACCCAGGCTCAGTCCATAGTGGAAGGATCAGGATCAGTTATGGTGACTGAGTTCAAACCAGTTCCTGATGTTGATTATCTACAGGAGTTATTGGCCATTCAACAACAAGGTCCTAGATCCATTGGTTTCTTTGGAACTCGGAATATGGGTTTCTTGCATCAAGAACTCATCGAGATTCTTAGCTATGCAATGGTTATAACGAAAAACCACATCTATACTTCAGGAGCATCTGGAACCAATGCAGCAGTTATCAGAGGTGCATTGAGGGCTGAGAAACCAGAACTGCTTACTGTCATTCTGCCACAAAGTTTGAAGAAACAACCTCCTGAGAGCCAGGAACTATTGTCCAAAGTTAAGAATGTGATAGAGAAGCCCTACAACGATCATCTACCTTTAATAGAAGCTAGCAGGTTATGCAATATGGACATCATTTCGCATGTACAGCAAGTCATTTGCTTTGCATTTCATGATAGTAGGTTGCTCATGGAAACTTGTCAAGAGGCAAAAAATCTCCGAAAAATCAGATTATTACATATTTTCCCTAATTTTGCTTGTAAAGTTGCTGCTCCTGCCTGCTCAAAGAGGGCCAATTTCCCTTTCCAAACCTTACTGTTCAAATCAGGAATTCTGCAGTGTTACAATGCTTTTACGAAAACACAATGCATTTATTTGCTTGTTCTAATGAAAGGGGCATTGATATCAAAACTTTCAAGTCTAAAACCAAATAGAGATGAATTAAAAGGAGAAAAACTCTTGCTGTGCCAACGTAGAACGAACACTGAGAAATAA ATGAGTTGTTCTTCATCTTTATCCCTCTGCTGCGTCTTCTTCCCTTTCCCCTCTCCTTCCCCTTCTCTTAGATTCATTAACATTTCCAATCCCTTCTTCTTCCCAAGCCCTAATGGACGCCGCCGCCGCCCTCCTCCTACTTCTCTCCATTCACCTCTGTGCATCCAAGGGCATATAAAAGGAGATAAAGATGGAGATAGTTACGTGCATCAGACGAAGAATACAACGCAGATGTTTGGATTTGGGTTTAATGATGAGAAGACGGGCACTCAAATTCCAACCCAGGCTCAGTCCATAGTGGAAGGATCAGGATCAGTTATGGTGACTGAGTTCAAACCAGTTCCTGATGTTGATTATCTACAGGAGTTATTGGCCATTCAACAACAAGGTCCTAGATCCATTGGTTTCTTTGGAACTCGGAATATGGGTTTCTTGCATCAAGAACTCATCGAGATTCTTAGCTATGCAATGGTTATAACGAAAAACCACATCTATACTTCAGGAGCATCTGGAACCAATGCAGCAGTTATCAGAGGTGCATTGAGGGCTGAGAAACCAGAACTGCTTACTGTCATTCTGCCACAAAGTTTGAAGAAACAACCTCCTGAGAGCCAGGAACTATTGTCCAAAGTTAAGAATGTGATAGAGAAGCCCTACAACGATCATCTACCTTTAATAGAAGCTAGCAGGTTATGCAATATGGACATCATTTCGCATGTACAGCAAGTCATTTGCTTTGCATTTCATGATAGTAGGTTGCTCATGGAAACTTGTCAAGAGGCAAAAAATCTCCGAAAAATCAGATTATTACATATTTTCCCTAATTTTGCTTGTAAAGTTGCTGCTCCTGCCTGCTCAAAGAGGGCCAATTTCCCTTTCCAAACCTTACTGTTCAAATCAGGAATTCTGCAGTGTTACAATGCTTTTACGAAAACACAATGCATTTATTTGCTTGTTCTAATGAAAGGGGCATTGATATCAAAACTTTCAAGTCTAAAACCAAATAGAGATGAATTAAAAGGAGAAAAACTCTTGCTGTGCCAACGTAGAACGAACACTGAGAAATAA
BLAST of CmoCh11G012040.1 vs. TrEMBL
Match: U5FWZ9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s08200g PE=4 SV=1) HSP 1 Score: 358.2 bits (918), Expect = 1.1e-95 Identity = 191/249 (76.71%), Postives = 211/249 (84.74%), Query Frame = 1
BLAST of CmoCh11G012040.1 vs. TrEMBL
Match: M5VQR9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009659mg PE=4 SV=1) HSP 1 Score: 356.7 bits (914), Expect = 3.3e-95 Identity = 191/258 (74.03%), Postives = 213/258 (82.56%), Query Frame = 1
BLAST of CmoCh11G012040.1 vs. TrEMBL
Match: A0A061EZ96_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_025087 PE=4 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 4.3e-95 Identity = 188/253 (74.31%), Postives = 209/253 (82.61%), Query Frame = 1
BLAST of CmoCh11G012040.1 vs. TrEMBL
Match: V4SMK8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012405mg PE=4 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 4.3e-95 Identity = 189/250 (75.60%), Postives = 210/250 (84.00%), Query Frame = 1
BLAST of CmoCh11G012040.1 vs. TrEMBL
Match: A0A151SB92_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_025976 PE=4 SV=1) HSP 1 Score: 354.0 bits (907), Expect = 2.1e-94 Identity = 180/213 (84.51%), Postives = 194/213 (91.08%), Query Frame = 1
BLAST of CmoCh11G012040.1 vs. TAIR10
Match: AT3G59870.1 (AT3G59870.1 unknown protein) HSP 1 Score: 338.6 bits (867), Expect = 4.7e-93 Identity = 171/228 (75.00%), Postives = 195/228 (85.53%), Query Frame = 1
BLAST of CmoCh11G012040.1 vs. TAIR10
Match: AT2G43945.1 (AT2G43945.1 unknown protein) HSP 1 Score: 329.3 bits (843), Expect = 2.9e-90 Identity = 164/184 (89.13%), Postives = 177/184 (96.20%), Query Frame = 1
BLAST of CmoCh11G012040.1 vs. NCBI nr
Match: gi|659092673|ref|XP_008447166.1| (PREDICTED: uncharacterized protein LOC103489683 isoform X1 [Cucumis melo]) HSP 1 Score: 435.6 bits (1119), Expect = 8.0e-119 Identity = 236/273 (86.45%), Postives = 247/273 (90.48%), Query Frame = 1
BLAST of CmoCh11G012040.1 vs. NCBI nr
Match: gi|449444096|ref|XP_004139811.1| (PREDICTED: uncharacterized protein LOC101209189 isoform X1 [Cucumis sativus]) HSP 1 Score: 433.0 bits (1112), Expect = 5.2e-118 Identity = 234/273 (85.71%), Postives = 246/273 (90.11%), Query Frame = 1
BLAST of CmoCh11G012040.1 vs. NCBI nr
Match: gi|359478235|ref|XP_002275901.2| (PREDICTED: uncharacterized protein LOC100242287 [Vitis vinifera]) HSP 1 Score: 364.0 bits (933), Expect = 3.0e-97 Identity = 200/275 (72.73%), Postives = 222/275 (80.73%), Query Frame = 1
BLAST of CmoCh11G012040.1 vs. NCBI nr
Match: gi|470101449|ref|XP_004287185.1| (PREDICTED: uncharacterized protein LOC101305205 isoform X1 [Fragaria vesca subsp. vesca]) HSP 1 Score: 360.1 bits (923), Expect = 4.3e-96 Identity = 192/253 (75.89%), Postives = 210/253 (83.00%), Query Frame = 1
BLAST of CmoCh11G012040.1 vs. NCBI nr
Match: gi|1009125169|ref|XP_015879466.1| (PREDICTED: uncharacterized protein LOC107415622 isoform X1 [Ziziphus jujuba]) HSP 1 Score: 359.0 bits (920), Expect = 9.6e-96 Identity = 182/227 (80.18%), Postives = 203/227 (89.43%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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