CmoCh11G011190.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G011190.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(DNA binding protein) (MYB-related transcription factor)
Location	Cmo_Chr11 : 6304241 .. 6305484 (-)
Sequence length	472

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCCTTGCAACCTTTTGAGCCCTTTCTTCCTTATTTTTATACTATTATCATGGCTTCCATGTCTTCCCATGGCTCTGCTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGGAGGCTTTGGCACGGTATGACCGAGACACACCTGACCGATGGCTCAATGTTGCAAGAGCTGTTGGTGGCAAAACTGAAGAGGAGGTCAAAAGGCACTACCAACTTCTTGTGGAGGATGTCAAGTTCATTGAGTCGGGCCGTGTTCCCTACCCGTATCGAAACTCGGGAGCCAGTAACTAAGGTAACGTGATCATTGATGGCAAAAATATGCATACAAAAAGAATCATGATAATGTCGTTACCAAAAACACTCGTTTATACACCCTGGTCAACAGTAACTTCTCGTAACCTTCAAATGGCTCAAAAGTTTTAGTAGAAGTCCGTATCTATTTATTGCAATAGAAACAGGTTAATGAAAGTACATAAAACCAAAATATCCTACTCATTAGGTTCTCCTCATTTATATCTAAGTTTTGTTCTTGATGATGTAGAACGTTTACATCATCATACCATCTTTGAAATTTATTTTCTCTCGATCAATATCTGATCATAATCTATAATAGTAATGTAGCTAAACGTATCGATCAAAGTAGAAGGTCATACGTTCATCCGTTCGTCCATGTTTATACAAAATAGTTGGTTAGTTGAGTTCAAGAAACCCTAGCCACACCATTGGCTTGTAAATGATCCCTTAGCTAGCTTGAAACGGATGTCATTATACAGTTTGTAAGTATATGAGCAGAGGAATGTCATTATCGATGAATAGAGGCCCCACACTTGGGCTGGATTCTTGTGTCAATGAATGGCTATATGTTTCAATAAAAAAACAATATAACTCATCGTCTTGTAAGCTTTTTGAAAGCCACCCTTCTTGTTCTTCCAAACTAAAGCTGCACCAATGTCTCAGCATTGGCTCTCACACCCCAACAAAAACAGGAATAATATTATATTACTGTTCATGTTAGATTGTAACCCAATGATTTTTTTTTAATTTTTTTAATTTTTAATTTCAGAAACAAGAAGCTCCATTGATCCATTGATCATGATCGTGAAGTAATAGAAGAATAAAAGGATTGGAGGAAGAACCATTTGCTAATGATTTGAAGAGTTATAATATCTATATTTCATTTGATATTCGTGTTAAGCTTGAAGTTAGTTTATTAATTCCATCCACTTTCAATTTTGAGAGGAA

mRNA sequence

TTCCCTTGCAACCTTTTGAGCCCTTTCTTCCTTATTTTTATACTATTATCATGGCTTCCATGTCTTCCCATGGCTCTGCTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGGAGGCTTTGGCACGGTATGACCGAGACACACCTGACCGATGGCTCAATGTTGCAAGAGCTGTTGGTGGCAAAACTGAAGAGGAGGTCAAAAGGCACTACCAACTTCTTGTGGAGGATGTCAAGTTCATTGAGTCGGGCCGTGTTCCCTACCCGTATCGAAACTCGGGAGCCAGTAACTAAAAACAAGAAGCTCCATTGATCCATTGATCATGATCGTGAAGTAATAGAAGAATAAAAGGATTGGAGGAAGAACCATTTGCTAATGATTTGAAGAGTTATAATATCTATATTTCATTTGATATTCGTGTTAAGCTTGAAGTTAGTTTATTAATTCCATCCACTTTCAATTTTGAGAGGAA

Coding sequence (CDS)

ATGGCTTCCATGTCTTCCCATGGCTCTGCTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGGAGGCTTTGGCACGGTATGACCGAGACACACCTGACCGATGGCTCAATGTTGCAAGAGCTGTTGGTGGCAAAACTGAAGAGGAGGTCAAAAGGCACTACCAACTTCTTGTGGAGGATGTCAAGTTCATTGAGTCGGGCCGTGTTCCCTACCCGTATCGAAACTCGGGAGCCAGTAACTAA

Homology

[Close]

BLAST of CmoCh11G011190.1 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.6e-25
Identity = 55/77 (71.43%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 2  ASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDV 61
          +SMSS  S SWTAKQNKAFE+ALA YD+DTP+RW NVA+ VGGKT EEVKRHY+LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGRVPYP-YRNSG 78
            IE+G VP+P YR SG
Sbjct: 64 NSIENGHVPFPNYRTSG 80

[Close]

BLAST of CmoCh11G011190.1 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-23
Identity = 52/70 (74.29%), Postives = 58/70 (82.86%), Query Frame = 1


Query: 3  SMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVK 62
          SMSS+GS SWT KQNKAFE ALA YD+DTPDRW NVARAVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGRVPYP 73
           IE+G VP+P
Sbjct: 65 SIENGHVPFP 74

[Close]

BLAST of CmoCh11G011190.1 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-23
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS S   SASWT K+NK FE ALA YD+DTPDRW NVARAVGGK+ EEV+RHY+LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKFIESGRVPYP-YRNSG 78
          V  IESGR P+P YR++G
Sbjct: 61 VNDIESGRYPHPNYRSNG 78

[Close]

BLAST of CmoCh11G011190.1 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.2e-23
Identity = 51/77 (66.23%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 5  SSHGSAS-WTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKF 64
          S+ GS   W+AK+NKAFE ALA YD+DTPDRW NVARAV G+T EEVK+HY++LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGRVPYP-YRNSGAS 80
          IESG+VP+P YR +G +
Sbjct: 63 IESGKVPFPNYRTTGGN 79

[Close]

BLAST of CmoCh11G011190.1 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-20
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS S    + WT  QNK FE ALA YD+DTPDRW NVA+AVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGRVPYPYRNSGASN 81
          +  IE+GRVP P   +  SN
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of CmoCh11G011190.1 vs. TrEMBL
Match: A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 7.1e-30
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MASMSSHGS +WT  QNKAFE+ALA YD+DTPDRWLNVA+AVGGKT EEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPYPYRNSGASN 81
          VKFIESG+VP+PYR SG  N
Sbjct: 61 VKFIESGQVPFPYRTSGGGN 80

[Close]

BLAST of CmoCh11G011190.1 vs. TrEMBL
Match: A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 9.3e-30
Identity = 63/76 (82.89%), Postives = 72/76 (94.74%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS+S+HGS  WTAKQNKAFEEALA YD+DTPDRWLNVA+A+GGKTEEEVKRHYQLL+ED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGRVPYPYRNS 77
          VK IESG+VP+PYR+S
Sbjct: 61 VKHIESGKVPFPYRSS 76

[Close]

BLAST of CmoCh11G011190.1 vs. TrEMBL
Match: A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.9e-27
Identity = 59/80 (73.75%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MASMS+HGS++WTA +NKAFE+ALA YD+DTP+RWLNVA+A+GGKTEEEVKRHYQLL+ED
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGRVPYPYRNSGASN 81
          V  IESG++P+PYR S  S+
Sbjct: 61 VNHIESGQIPFPYRKSTRSS 80

[Close]

BLAST of CmoCh11G011190.1 vs. TrEMBL
Match: A0A0D2W2J5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036700 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-26
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 2  ASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDV 61
          +SMSS GS SWTAKQNK FE ALA YD+DTPDRW NVA+AVGGKT EEVKRHY+LLV DV
Sbjct: 4  SSMSSRGSGSWTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVADV 63

Query: 62 KFIESGRVPYPYRNSG 78
          K+IESG+VP+PYR++G
Sbjct: 64 KYIESGQVPFPYRSNG 79

[Close]

BLAST of CmoCh11G011190.1 vs. TrEMBL
Match: B9H0R6_POPTR (Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0004s16270g PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.1e-26
Identity = 62/79 (78.48%), Postives = 70/79 (88.61%), Query Frame = 1


Query: 2  ASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDV 61
          +S+SS GS SWTA+QNKAFE ALA YDRDTPDRW NVARAVGGKT EEVKRHY++LVEDV
Sbjct: 4  SSVSSRGSGSWTAQQNKAFERALAVYDRDTPDRWHNVARAVGGKTAEEVKRHYEILVEDV 63

Query: 62 KFIESGRVPYP-YRNSGAS 80
          K IESGRVP+P YR +GA+
Sbjct: 64 KHIESGRVPFPNYRTTGAN 82

[Close]

BLAST of CmoCh11G011190.1 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-26
Identity = 55/77 (71.43%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 2  ASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDV 61
          +SMSS  S SWTAKQNKAFE+ALA YD+DTP+RW NVA+ VGGKT EEVKRHY+LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGRVPYP-YRNSG 78
            IE+G VP+P YR SG
Sbjct: 64 NSIENGHVPFPNYRTSG 80

[Close]

BLAST of CmoCh11G011190.1 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 109.8 bits (273), Expect = 8.0e-25
Identity = 52/70 (74.29%), Postives = 58/70 (82.86%), Query Frame = 1


Query: 3  SMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVK 62
          SMSS+GS SWT KQNKAFE ALA YD+DTPDRW NVARAVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGRVPYP 73
           IE+G VP+P
Sbjct: 65 SIENGHVPFP 74

[Close]

BLAST of CmoCh11G011190.1 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 100.1 bits (248), Expect = 6.4e-22
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS S    + WT  QNK FE ALA YD+DTPDRW NVA+AVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGRVPYPYRNSGASN 81
          +  IE+GRVP P   +  SN
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of CmoCh11G011190.1 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 99.8 bits (247), Expect = 8.3e-22
Identity = 50/77 (64.94%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS SS  ++SWTA+++K FE ALA++D+DTPDRW  +ARAVGGK+ EEVKRHY+LL+ D
Sbjct: 1  MAS-SSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRD 60

Query: 61 VKFIESGRVPYP-YRNS 77
          V  IESGR P P YRN+
Sbjct: 61 VNDIESGRYPQPRYRNT 76

[Close]

BLAST of CmoCh11G011190.1 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 98.6 bits (244), Expect = 1.9e-21
Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS S   S+SWT+KQNK FE ALA YD+DTPDRW NVA+AVG K+ EEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGRVPYP 73
          +  IE   VP P
Sbjct: 61 LMNIEQDLVPLP 72

[Close]

BLAST of CmoCh11G011190.1 vs. NCBI nr
Match: gi|659092346|ref|XP_008447024.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 3.5e-30
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MASMSSHGS +WT KQNKAFE+ALA YD+DTPDRWLNVA+AVGGKT EEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPYPYRNSGASN 81
          VKFIESG+VP+PYR SG  N
Sbjct: 61 VKFIESGQVPFPYRTSGDGN 80

[Close]

BLAST of CmoCh11G011190.1 vs. NCBI nr
Match: gi|778725458|ref|XP_004151125.2| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-29
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MASMSSHGS +WT  QNKAFE+ALA YD+DTPDRWLNVA+AVGGKT EEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGRVPYPYRNSGASN 81
          VKFIESG+VP+PYR SG  N
Sbjct: 61 VKFIESGQVPFPYRTSGGGN 80

[Close]

BLAST of CmoCh11G011190.1 vs. NCBI nr
Match: gi|449466805|ref|XP_004151116.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-29
Identity = 63/76 (82.89%), Postives = 72/76 (94.74%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS+S+HGS  WTAKQNKAFEEALA YD+DTPDRWLNVA+A+GGKTEEEVKRHYQLL+ED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGRVPYPYRNS 77
          VK IESG+VP+PYR+S
Sbjct: 61 VKHIESGKVPFPYRSS 76

[Close]

BLAST of CmoCh11G011190.1 vs. NCBI nr
Match: gi|659092351|ref|XP_008447025.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-29
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MASMS+HGS  WTAKQNKAFE+ALA YD+DTPDRWLNVA+A+GGKTEEEVKRHYQLL+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGRVPYPYRNS 77
          VK IESG+VP+PYR S
Sbjct: 61 VKHIESGKVPFPYRTS 76

[Close]

BLAST of CmoCh11G011190.1 vs. NCBI nr
Match: gi|778725452|ref|XP_011658943.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-27
Identity = 59/80 (73.75%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MASMS+HGS++WTA +NKAFE+ALA YD+DTP+RWLNVA+A+GGKTEEEVKRHYQLL+ED
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGRVPYPYRNSGASN 81
          V  IESG++P+PYR S  S+
Sbjct: 61 VNHIESGQIPFPYRKSTRSS 80

The following BLAST results are available for this feature:

BLAST of CmoCh11G011190.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RADL1_ARATH	2.6e-25	71.43	Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1	[more]
RADL2_ARATH	1.4e-23	74.29	Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1	[more]
RADL3_ARATH	1.4e-23	69.23	Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1	[more]
RAD_ANTMA	4.2e-23	66.23	Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1	[more]
RADL6_ARATH	1.1e-20	63.75	Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1	[more]

BLAST of CmoCh11G011190.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K348_CUCSA	7.1e-30	81.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1	[more]
A0A0A0K344_CUCSA	9.3e-30	82.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1	[more]
A0A0A0K3K0_CUCSA	1.9e-27	73.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1	[more]
A0A0D2W2J5_GOSRA	1.3e-26	77.63	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036700 PE=4 SV=1	[more]
B9H0R6_POPTR	2.1e-26	78.48	Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0...	[more]

BLAST of CmoCh11G011190.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39250.1	1.5e-26	71.43	RAD-like 1	[more]
AT2G21650.1	8.0e-25	74.29	Homeodomain-like superfamily protein	[more]
AT1G75250.1	6.4e-22	63.75	RAD-like 6	[more]
AT2G18328.1	8.3e-22	64.94	RAD-like 4	[more]
AT1G19510.1	1.9e-21	66.67	RAD-like 5	[more]

BLAST of CmoCh11G011190.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092346\|ref\|XP_008447024.1\|	3.5e-30	82.50	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
gi\|778725458\|ref\|XP_004151125.2\|	1.0e-29	81.25	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]
gi\|449466805\|ref\|XP_004151116.1\|	1.3e-29	82.89	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]
gi\|659092351\|ref\|XP_008447025.1\|	2.3e-29	82.89	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
gi\|778725452\|ref\|XP_011658943.1\|	2.8e-27	73.75	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017884	SANT_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh11G011190	CmoCh11G011190	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh11G011190.1	CmoCh11G011190.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G011190.1.three_prime_UTR.1	CmoCh11G011190.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G011190.1.CDS.1	CmoCh11G011190.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G011190.1.five_prime_UTR.1	CmoCh11G011190.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G011190.1.exon.2	CmoCh11G011190.1.exon.2	exon
CmoCh11G011190.1.exon.1	CmoCh11G011190.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 11..56 score: 9.
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 score: 2.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 10..62 score: 2.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 11..64 score: 1.14
IPR017884	SANT domain	PROFILE	PS51293	SANT	coord: 7..62 score: 9
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 9..71 score: 2.2
None	No IPR available	PANTHER	PTHR24078:SF177	PROTEIN DNJ-23-RELATED	coord: 9..71 score: 2.2