CmoCh09G011720.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCGTGTCTATCAAGATAATGTCTCTTATTGTTGCAACTTTAGGTGTGATATCCTTTATATTTGGAGTCATAGCTGAGAACAAGAAGGTAACCTTCTGTTCATAAATTGTTTGATTCTTATTGTGTAGATATTTGTGAATTTGAAACAATCACAAGATGAGAATCTCCCAACCCATGCAATATCACAAGCTCCCTTATTGATGTTCATTATCCTTTCTTGTTGTGTTTGCTTATGGGCAGCCTGCATCTGGAACTCCCATCCCAGGCAAAGGCATTGTTATCTGTCAGTATCCAACGGACCCAACTGTGGCCTTGGGATATCTTTCTGTTGCGTTTCTTCTTGCTTCTTCAATTGCAGGATACTTCTCTATATTCTATCCATATCAATGAAAATCTGTTCCTCGAGGTGCCTTGTTTAAGAGCACCAGTTTCTCTATTTTCTTCAACATTGCCCTGTAACTTCTCTTTCCAAATCACATCCATTACTCTTAATTGTTACCTAAAAAGTGATTTCGAAACGTTATCAATCAAGCTACCTCTGTGTTTGCAGGTTCACAACTGGATTGGCTATAACTTTGCTCTTATGGCCTACAGTCACCGAGCAAATTCACTTGATTCGCAATGTTCATCACAATCTCGAGAATGCATGCCCGACAGCTAAGACTGGTCTTCTGGGTGGTGGTGCATTTCTATCCCTTGATTCATCCCTCTTCTGGTTGGTTGCCCTGATGTTGGCTGGAAATGCTCGAGAGGACTACTTTGATGAAATAGAGGAAAACGGAGACAATACTGAGGCTCTTAAGAATAGTGTATGA ATGGCCGTGTCTATCAAGATAATGTCTCTTATTGTTGCAACTTTAGGTGTGATATCCTTTATATTTGGAGTCATAGCTGAGAACAAGAAGCCTGCATCTGGAACTCCCATCCCAGGCAAAGGCATTGTTATCTGTCAGTTCACAACTGGATTGGCTATAACTTTGCTCTTATGGCCTACAGTCACCGAGCAAATTCACTTGATTCGCAATGTTCATCACAATCTCGAGAATGCATGCCCGACAGCTAAGACTGGTCTTCTGGGTGGTGGTGCATTTCTATCCCTTGATTCATCCCTCTTCTGGTTGGTTGCCCTGATGTTGGCTGGAAATGCTCGAGAGGACTACTTTGATGAAATAGAGGAAAACGGAGACAATACTGAGGCTCTTAAGAATAGTGTATGA ATGGCCGTGTCTATCAAGATAATGTCTCTTATTGTTGCAACTTTAGGTGTGATATCCTTTATATTTGGAGTCATAGCTGAGAACAAGAAGCCTGCATCTGGAACTCCCATCCCAGGCAAAGGCATTGTTATCTGTCAGTTCACAACTGGATTGGCTATAACTTTGCTCTTATGGCCTACAGTCACCGAGCAAATTCACTTGATTCGCAATGTTCATCACAATCTCGAGAATGCATGCCCGACAGCTAAGACTGGTCTTCTGGGTGGTGGTGCATTTCTATCCCTTGATTCATCCCTCTTCTGGTTGGTTGCCCTGATGTTGGCTGGAAATGCTCGAGAGGACTACTTTGATGAAATAGAGGAAAACGGAGACAATACTGAGGCTCTTAAGAATAGTGTATGA
BLAST of CmoCh09G011720.1 vs. TrEMBL
Match: A0A0B0N260_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_33826 PE=4 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 1.9e-43 Identity = 97/150 (64.67%), Postives = 111/150 (74.00%), Query Frame = 1
BLAST of CmoCh09G011720.1 vs. TrEMBL
Match: A0A0A0LHD9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881600 PE=4 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 7.1e-43 Identity = 108/188 (57.45%), Postives = 118/188 (62.77%), Query Frame = 1
BLAST of CmoCh09G011720.1 vs. TrEMBL
Match: A0A0A0LEF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881610 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 7.4e-40 Identity = 104/189 (55.03%), Postives = 116/189 (61.38%), Query Frame = 1
BLAST of CmoCh09G011720.1 vs. TrEMBL
Match: A0A059AA01_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00358 PE=4 SV=1) HSP 1 Score: 167.5 bits (423), Expect = 1.1e-38 Identity = 93/167 (55.69%), Postives = 109/167 (65.27%), Query Frame = 1
BLAST of CmoCh09G011720.1 vs. TrEMBL
Match: A0A067KRQ1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11059 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 1.6e-34 Identity = 92/179 (51.40%), Postives = 105/179 (58.66%), Query Frame = 1
BLAST of CmoCh09G011720.1 vs. TAIR10
Match: AT4G31130.1 (AT4G31130.1 Protein of unknown function (DUF1218)) HSP 1 Score: 130.6 bits (327), Expect = 7.3e-31 Identity = 60/77 (77.92%), Postives = 69/77 (89.61%), Query Frame = 1
BLAST of CmoCh09G011720.1 vs. NCBI nr
Match: gi|728827263|gb|KHG07105.1| (hypothetical protein F383_33826 [Gossypium arboreum]) HSP 1 Score: 183.3 bits (464), Expect = 2.7e-43 Identity = 97/150 (64.67%), Postives = 111/150 (74.00%), Query Frame = 1
BLAST of CmoCh09G011720.1 vs. NCBI nr
Match: gi|449437098|ref|XP_004136329.1| (PREDICTED: uncharacterized protein LOC101222863 [Cucumis sativus]) HSP 1 Score: 181.4 bits (459), Expect = 1.0e-42 Identity = 108/188 (57.45%), Postives = 118/188 (62.77%), Query Frame = 1
BLAST of CmoCh09G011720.1 vs. NCBI nr
Match: gi|659132705|ref|XP_008466340.1| (PREDICTED: uncharacterized protein LOC103503777 [Cucumis melo]) HSP 1 Score: 172.6 bits (436), Expect = 4.8e-40 Identity = 103/188 (54.79%), Postives = 114/188 (60.64%), Query Frame = 1
BLAST of CmoCh09G011720.1 vs. NCBI nr
Match: gi|449437094|ref|XP_004136327.1| (PREDICTED: uncharacterized protein LOC101222453 [Cucumis sativus]) HSP 1 Score: 171.4 bits (433), Expect = 1.1e-39 Identity = 104/189 (55.03%), Postives = 116/189 (61.38%), Query Frame = 1
BLAST of CmoCh09G011720.1 vs. NCBI nr
Match: gi|629084316|gb|KCW50673.1| (hypothetical protein EUGRSUZ_J00358 [Eucalyptus grandis]) HSP 1 Score: 167.5 bits (423), Expect = 1.5e-38 Identity = 93/167 (55.69%), Postives = 109/167 (65.27%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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