CmoCh09G011720 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh09G011720
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransmembrane protein, putative
LocationCmo_Chr09 : 7890468 .. 7891285 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTGTCTATCAAGATAATGTCTCTTATTGTTGCAACTTTAGGTGTGATATCCTTTATATTTGGAGTCATAGCTGAGAACAAGAAGGTAACCTTCTGTTCATAAATTGTTTGATTCTTATTGTGTAGATATTTGTGAATTTGAAACAATCACAAGATGAGAATCTCCCAACCCATGCAATATCACAAGCTCCCTTATTGATGTTCATTATCCTTTCTTGTTGTGTTTGCTTATGGGCAGCCTGCATCTGGAACTCCCATCCCAGGCAAAGGCATTGTTATCTGTCAGTATCCAACGGACCCAACTGTGGCCTTGGGATATCTTTCTGTTGCGTTTCTTCTTGCTTCTTCAATTGCAGGATACTTCTCTATATTCTATCCATATCAATGAAAATCTGTTCCTCGAGGTGCCTTGTTTAAGAGCACCAGTTTCTCTATTTTCTTCAACATTGCCCTGTAACTTCTCTTTCCAAATCACATCCATTACTCTTAATTGTTACCTAAAAAGTGATTTCGAAACGTTATCAATCAAGCTACCTCTGTGTTTGCAGGTTCACAACTGGATTGGCTATAACTTTGCTCTTATGGCCTACAGTCACCGAGCAAATTCACTTGATTCGCAATGTTCATCACAATCTCGAGAATGCATGCCCGACAGCTAAGACTGGTCTTCTGGGTGGTGGTGCATTTCTATCCCTTGATTCATCCCTCTTCTGGTTGGTTGCCCTGATGTTGGCTGGAAATGCTCGAGAGGACTACTTTGATGAAATAGAGGAAAACGGAGACAATACTGAGGCTCTTAAGAATAGTGTATGA

mRNA sequence

ATGGCCGTGTCTATCAAGATAATGTCTCTTATTGTTGCAACTTTAGGTGTGATATCCTTTATATTTGGAGTCATAGCTGAGAACAAGAAGCCTGCATCTGGAACTCCCATCCCAGGCAAAGGCATTGTTATCTGTCAGTTCACAACTGGATTGGCTATAACTTTGCTCTTATGGCCTACAGTCACCGAGCAAATTCACTTGATTCGCAATGTTCATCACAATCTCGAGAATGCATGCCCGACAGCTAAGACTGGTCTTCTGGGTGGTGGTGCATTTCTATCCCTTGATTCATCCCTCTTCTGGTTGGTTGCCCTGATGTTGGCTGGAAATGCTCGAGAGGACTACTTTGATGAAATAGAGGAAAACGGAGACAATACTGAGGCTCTTAAGAATAGTGTATGA

Coding sequence (CDS)

ATGGCCGTGTCTATCAAGATAATGTCTCTTATTGTTGCAACTTTAGGTGTGATATCCTTTATATTTGGAGTCATAGCTGAGAACAAGAAGCCTGCATCTGGAACTCCCATCCCAGGCAAAGGCATTGTTATCTGTCAGTTCACAACTGGATTGGCTATAACTTTGCTCTTATGGCCTACAGTCACCGAGCAAATTCACTTGATTCGCAATGTTCATCACAATCTCGAGAATGCATGCCCGACAGCTAAGACTGGTCTTCTGGGTGGTGGTGCATTTCTATCCCTTGATTCATCCCTCTTCTGGTTGGTTGCCCTGATGTTGGCTGGAAATGCTCGAGAGGACTACTTTGATGAAATAGAGGAAAACGGAGACAATACTGAGGCTCTTAAGAATAGTGTATGA
Homology
[Close]
BLAST of CmoCh09G011720 vs. TrEMBL
Match: A0A0B0N260_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_33826 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-43
Identity = 97/150 (64.67%), Postives = 111/150 (74.00%), Query Frame = 1 

Query: 1   MAVSIKIMSLIVATLGVISFIFGVIAENKKPASGTPIPGKGIVICQ-------------- 60
           MAV+IK  +LIVA+LGV+SFIFGVIAENKKPA+GTPI GK +VIC+              
Sbjct: 1   MAVTIKRAALIVASLGVLSFIFGVIAENKKPAAGTPISGKDVVICKYPSDPSVVLGYLSV 60

Query: 61  --------------FTTGLAITLLLWPTVTEQIHLIRNVHHNLENACPTAKTGLLGGGAF 120
                         FT GLA TLLLWPT+TE +HLIRNVHHNL   CPTAKTGLLGGGAF
Sbjct: 61  AFLILSTLTGYWSLFTGGLAATLLLWPTITEHLHLIRNVHHNLSTECPTAKTGLLGGGAF 120

Query: 121 LSLDSSLFWLVALMLAGNAREDYFDEIEEN 123
           +SLDS LFWLVALMLAGNARED+FDE+E++
Sbjct: 121 VSLDSVLFWLVALMLAGNAREDHFDEVEKD 150

[Close]
BLAST of CmoCh09G011720 vs. TrEMBL
Match: A0A0A0LHD9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881600 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 7.1e-43
Identity = 108/188 (57.45%), Postives = 118/188 (62.77%), Query Frame = 1 

Query: 1   MAVSIKIMSLIVATLGVISFIFGVIAENKKP----------------------------- 60
           MAVS+K+MSLIVA LGV SFIFGVIAENKKP                             
Sbjct: 1   MAVSVKLMSLIVAALGVTSFIFGVIAENKKPASGTPIPGKGIVICQYPGDPTVVLGYLSV 60

Query: 61  -------ASGT-----PIPGKGIV---------------ICQFTTGLAITLLLWPTVTEQ 120
                  A+G      P  GK +                I  FTTGLAITLL+WPTVTEQ
Sbjct: 61  AFLLASSAAGYLSLFYPYQGKSVPRGAMFKSSSFSTFFNIALFTTGLAITLLVWPTVTEQ 120

Query: 121 IHLIRNVHHNLENACPTAKTGLLGGGAFLSLDSSLFWLVALMLAGNAREDYFDEIEENGD 133
           +HL RNVHHN+E ACPTAKTGLLGGGAFLSLDSSLFWLVALMLAGNAREDYFDEI E G 
Sbjct: 121 LHLTRNVHHNIETACPTAKTGLLGGGAFLSLDSSLFWLVALMLAGNAREDYFDEIAEKGS 180

[Close]
BLAST of CmoCh09G011720 vs. TrEMBL
Match: A0A0A0LEF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881610 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.4e-40
Identity = 104/189 (55.03%), Postives = 116/189 (61.38%), Query Frame = 1 

Query: 1   MAVSIKIMSLIVATLGVISFIFGVIAENKKP----------------------------- 60
           MAVS+K+MSL+V TLGVISF+FGV+AENKKP                             
Sbjct: 1   MAVSVKLMSLLVGTLGVISFVFGVVAENKKPASGTPIPGKGHVVCKYQSDPTVALGFLSF 60

Query: 61  ----ASGT--------PIPGKGIV---------------ICQFTTGLAITLLLWPTVTEQ 120
               AS          P  GK +                I  FTTGLAIT+L+WPTVTEQ
Sbjct: 61  MFLLASSCAGYLSLFYPYEGKSVPRGAFFKSSTFFAFFNIALFTTGLAITMLVWPTVTEQ 120

Query: 121 IHLIRNVHHNLENACPTAKTGLLGGGAFLSLDSSLFWLVALMLAGNAREDYFDEIEENG- 133
           +HL RNVH NL+ ACPTAKTGLLGGGAFLSLDSSLFWLVALMLAGNAREDYFDEI E G 
Sbjct: 121 LHLTRNVHFNLDTACPTAKTGLLGGGAFLSLDSSLFWLVALMLAGNAREDYFDEIAEKGT 180

[Close]
BLAST of CmoCh09G011720 vs. TrEMBL
Match: A0A059AA01_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00358 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-38
Identity = 93/167 (55.69%), Postives = 109/167 (65.27%), Query Frame = 1 

Query: 1   MAVSIKIMSLIVATLGVISFIFGVIAENKKPASGTPIPGKGIVICQFTT----------- 60
           M VS+K  ++IV TLG +SFIFGVIAENKKPASGT I GK +VIC+F +           
Sbjct: 1   MGVSMKQTAVIVGTLGTLSFIFGVIAENKKPASGTVITGKDVVICKFPSDPTVALGYLSF 60

Query: 61  ------------------------GLAITLLLWPTVTEQIHLIRNVHHNLENACPTAKTG 120
                                   GLA  +LLWPT+TEQ+H +RNVH NL   CPTAKTG
Sbjct: 61  AFLLLCTVAGYWSLFYPYKGRFVGGLAAAMLLWPTITEQLHQVRNVHKNLSYECPTAKTG 120

Query: 121 LLGGGAFLSLDSSLFWLVALMLAGNAREDYFDEIEE---NGDNTEAL 130
           LLGGGAFLSLDS+LFWLVALMLA N RED+FDE++E   +GD  EAL
Sbjct: 121 LLGGGAFLSLDSALFWLVALMLADNTREDFFDEVDEPRKDGDQGEAL 167

[Close]
BLAST of CmoCh09G011720 vs. TrEMBL
Match: A0A067KRQ1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11059 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-34
Identity = 92/179 (51.40%), Postives = 105/179 (58.66%), Query Frame = 1 

Query: 1   MAVSIKIMSLIVATLGVISFIFGVIAENKKP----------------------ASGT--- 60
           MAV+++ MS+IVATLG +SFIFGVIAENKKP                      A G    
Sbjct: 1   MAVTVRQMSVIVATLGTLSFIFGVIAENKKPAAGTPITGKGVVICKYPSDPTVALGYLSF 60

Query: 61  ----------------PIPGKGIV---------------ICQFTTGLAITLLLWPTVTEQ 120
                           P  GK I                I  FT GLA  LLLWPT+TEQ
Sbjct: 61  AFLVLSALAGFWSLFYPYKGKSIPQSALFQSTSFVVFFNIAVFTAGLAAALLLWPTITEQ 120

Query: 121 IHLIRNVHHNLENACPTAKTGLLGGGAFLSLDSSLFWLVALMLAGNAREDYFDEIEENG 124
           +HL+R VHHN+E  CPTAKTGLLGGGAF+SLDS+LFWLVALMLA NAREDYFDE+E+ G
Sbjct: 121 LHLMRKVHHNMETDCPTAKTGLLGGGAFISLDSALFWLVALMLADNAREDYFDEVEKGG 179

[Close]
BLAST of CmoCh09G011720 vs. TAIR10
Match: AT4G31130.1 (AT4G31130.1 Protein of unknown function (DUF1218))

HSP 1 Score: 130.6 bits (327), Expect = 7.3e-31
Identity = 60/77 (77.92%), Postives = 69/77 (89.61%), Query Frame = 1 

Query: 44  ICQFTTGLAITLLLWPTVTEQIHLIRNVHHNLENACPTAKTGLLGGGAFLSLDSSLFWLV 103
           I   T+GLA++LLLWPT+TEQ+HL RNVH NLE +CPTAKTGLLGGGAF+SLDS LFWLV
Sbjct: 100 IALITSGLALSLLLWPTITEQLHLTRNVHRNLETSCPTAKTGLLGGGAFVSLDSCLFWLV 159

Query: 104 ALMLAGNAREDYFDEIE 121
           ALMLA NARED+FDE+E
Sbjct: 160 ALMLADNAREDHFDEVE 176

[Close]
BLAST of CmoCh09G011720 vs. NCBI nr
Match: gi|728827263|gb|KHG07105.1| (hypothetical protein F383_33826 [Gossypium arboreum])

HSP 1 Score: 183.3 bits (464), Expect = 2.7e-43
Identity = 97/150 (64.67%), Postives = 111/150 (74.00%), Query Frame = 1 

Query: 1   MAVSIKIMSLIVATLGVISFIFGVIAENKKPASGTPIPGKGIVICQ-------------- 60
           MAV+IK  +LIVA+LGV+SFIFGVIAENKKPA+GTPI GK +VIC+              
Sbjct: 1   MAVTIKRAALIVASLGVLSFIFGVIAENKKPAAGTPISGKDVVICKYPSDPSVVLGYLSV 60

Query: 61  --------------FTTGLAITLLLWPTVTEQIHLIRNVHHNLENACPTAKTGLLGGGAF 120
                         FT GLA TLLLWPT+TE +HLIRNVHHNL   CPTAKTGLLGGGAF
Sbjct: 61  AFLILSTLTGYWSLFTGGLAATLLLWPTITEHLHLIRNVHHNLSTECPTAKTGLLGGGAF 120

Query: 121 LSLDSSLFWLVALMLAGNAREDYFDEIEEN 123
           +SLDS LFWLVALMLAGNARED+FDE+E++
Sbjct: 121 VSLDSVLFWLVALMLAGNAREDHFDEVEKD 150

[Close]
BLAST of CmoCh09G011720 vs. NCBI nr
Match: gi|449437098|ref|XP_004136329.1| (PREDICTED: uncharacterized protein LOC101222863 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 1.0e-42
Identity = 108/188 (57.45%), Postives = 118/188 (62.77%), Query Frame = 1 

Query: 1   MAVSIKIMSLIVATLGVISFIFGVIAENKKP----------------------------- 60
           MAVS+K+MSLIVA LGV SFIFGVIAENKKP                             
Sbjct: 1   MAVSVKLMSLIVAALGVTSFIFGVIAENKKPASGTPIPGKGIVICQYPGDPTVVLGYLSV 60

Query: 61  -------ASGT-----PIPGKGIV---------------ICQFTTGLAITLLLWPTVTEQ 120
                  A+G      P  GK +                I  FTTGLAITLL+WPTVTEQ
Sbjct: 61  AFLLASSAAGYLSLFYPYQGKSVPRGAMFKSSSFSTFFNIALFTTGLAITLLVWPTVTEQ 120

Query: 121 IHLIRNVHHNLENACPTAKTGLLGGGAFLSLDSSLFWLVALMLAGNAREDYFDEIEENGD 133
           +HL RNVHHN+E ACPTAKTGLLGGGAFLSLDSSLFWLVALMLAGNAREDYFDEI E G 
Sbjct: 121 LHLTRNVHHNIETACPTAKTGLLGGGAFLSLDSSLFWLVALMLAGNAREDYFDEIAEKGS 180

[Close]
BLAST of CmoCh09G011720 vs. NCBI nr
Match: gi|659132705|ref|XP_008466340.1| (PREDICTED: uncharacterized protein LOC103503777 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 4.8e-40
Identity = 103/188 (54.79%), Postives = 114/188 (60.64%), Query Frame = 1 

Query: 1   MAVSIKIMSLIVATLGVISFIFGVIAENKKP----------------------ASGT--- 60
           MAVS+K+MSL+V TLGVISF+FGV+AENKKP                      A G    
Sbjct: 1   MAVSVKLMSLLVGTLGVISFVFGVVAENKKPASGTPIPGKGLVVCKYQSDPTVALGFLSF 60

Query: 61  ----------------PIPGKGIV---------------ICQFTTGLAITLLLWPTVTEQ 120
                           P  GK +                I  FTTGLAIT+L+WPTVTEQ
Sbjct: 61  LFLLASSFAGYLSLFYPYEGKSVPRGAFFKSSSFSAFFNIALFTTGLAITMLVWPTVTEQ 120

Query: 121 IHLIRNVHHNLENACPTAKTGLLGGGAFLSLDSSLFWLVALMLAGNAREDYFDEIEENGD 133
           +HL RNVH NL  ACPTAKTGLLGGGAFLSLDSSL WLVALMLAGNAREDYFDEI E G 
Sbjct: 121 LHLTRNVHFNLNTACPTAKTGLLGGGAFLSLDSSLLWLVALMLAGNAREDYFDEIAEKGT 180

[Close]
BLAST of CmoCh09G011720 vs. NCBI nr
Match: gi|449437094|ref|XP_004136327.1| (PREDICTED: uncharacterized protein LOC101222453 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-39
Identity = 104/189 (55.03%), Postives = 116/189 (61.38%), Query Frame = 1 

Query: 1   MAVSIKIMSLIVATLGVISFIFGVIAENKKP----------------------------- 60
           MAVS+K+MSL+V TLGVISF+FGV+AENKKP                             
Sbjct: 1   MAVSVKLMSLLVGTLGVISFVFGVVAENKKPASGTPIPGKGHVVCKYQSDPTVALGFLSF 60

Query: 61  ----ASGT--------PIPGKGIV---------------ICQFTTGLAITLLLWPTVTEQ 120
               AS          P  GK +                I  FTTGLAIT+L+WPTVTEQ
Sbjct: 61  MFLLASSCAGYLSLFYPYEGKSVPRGAFFKSSTFFAFFNIALFTTGLAITMLVWPTVTEQ 120

Query: 121 IHLIRNVHHNLENACPTAKTGLLGGGAFLSLDSSLFWLVALMLAGNAREDYFDEIEENG- 133
           +HL RNVH NL+ ACPTAKTGLLGGGAFLSLDSSLFWLVALMLAGNAREDYFDEI E G 
Sbjct: 121 LHLTRNVHFNLDTACPTAKTGLLGGGAFLSLDSSLFWLVALMLAGNAREDYFDEIAEKGT 180

[Close]
BLAST of CmoCh09G011720 vs. NCBI nr
Match: gi|629084316|gb|KCW50673.1| (hypothetical protein EUGRSUZ_J00358 [Eucalyptus grandis])

HSP 1 Score: 167.5 bits (423), Expect = 1.5e-38
Identity = 93/167 (55.69%), Postives = 109/167 (65.27%), Query Frame = 1 

Query: 1   MAVSIKIMSLIVATLGVISFIFGVIAENKKPASGTPIPGKGIVICQFTT----------- 60
           M VS+K  ++IV TLG +SFIFGVIAENKKPASGT I GK +VIC+F +           
Sbjct: 1   MGVSMKQTAVIVGTLGTLSFIFGVIAENKKPASGTVITGKDVVICKFPSDPTVALGYLSF 60

Query: 61  ------------------------GLAITLLLWPTVTEQIHLIRNVHHNLENACPTAKTG 120
                                   GLA  +LLWPT+TEQ+H +RNVH NL   CPTAKTG
Sbjct: 61  AFLLLCTVAGYWSLFYPYKGRFVGGLAAAMLLWPTITEQLHQVRNVHKNLSYECPTAKTG 120

Query: 121 LLGGGAFLSLDSSLFWLVALMLAGNAREDYFDEIEE---NGDNTEAL 130
           LLGGGAFLSLDS+LFWLVALMLA N RED+FDE++E   +GD  EAL
Sbjct: 121 LLGGGAFLSLDSALFWLVALMLADNTREDFFDEVDEPRKDGDQGEAL 167

The following BLAST results are available for this feature:
BLAST of CmoCh09G011720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh09G011720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B0N260_GOSAR1.9e-4364.67Uncharacterized protein OS=Gossypium arboreum GN=F383_33826 PE=4 SV=1[more]
A0A0A0LHD9_CUCSA7.1e-4357.45Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881600 PE=4 SV=1[more]
A0A0A0LEF8_CUCSA7.4e-4055.03Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881610 PE=4 SV=1[more]
A0A059AA01_EUCGR1.1e-3855.69Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00358 PE=4 SV=1[more]
A0A067KRQ1_JATCU1.6e-3451.40Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11059 PE=4 SV=1[more]
BLAST of CmoCh09G011720 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G31130.17.3e-3177.92 Protein of unknown function (DUF1218)[more]
BLAST of CmoCh09G011720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|728827263|gb|KHG07105.1|2.7e-4364.67hypothetical protein F383_33826 [Gossypium arboreum][more]
gi|449437098|ref|XP_004136329.1|1.0e-4257.45PREDICTED: uncharacterized protein LOC101222863 [Cucumis sativus][more]
gi|659132705|ref|XP_008466340.1|4.8e-4054.79PREDICTED: uncharacterized protein LOC103503777 [Cucumis melo][more]
gi|449437094|ref|XP_004136327.1|1.1e-3955.03PREDICTED: uncharacterized protein LOC101222453 [Cucumis sativus][more]
gi|629084316|gb|KCW50673.1|1.5e-3855.69hypothetical protein EUGRSUZ_J00358 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009606DUF1218
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G011720.1CmoCh09G011720.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009606Protein of unknown function DUF1218PFAMPF06749DUF1218coord: 43..98
score: 5.
NoneNo IPR availablePANTHERPTHR31769FAMILY NOT NAMEDcoord: 1..127
score: 1.7
NoneNo IPR availablePANTHERPTHR31769:SF9SUBFAMILY NOT NAMEDcoord: 1..127
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh09G011720Cucurbita maxima (Rimu)cmacmoB027
CmoCh09G011720Cucurbita maxima (Rimu)cmacmoB441
CmoCh09G011720Cucurbita pepo (Zucchini)cmocpeB021