CmoCh09G001500.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G001500.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(DNA binding protein) (MYB-related transcription factor)
Location	Cmo_Chr09 : 676769 .. 677056 (+)
Sequence length	288

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCAAGCTCTGTCACGTCGGCGGCACGTGGGTTTTACTCATCCTGGACAAAAAAAGAAAACAAGAAATTTGAGGAGGCATTAGCCTACTATGACCAGGACACACCAGACCGTTTTGAGAAGGTAGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGCAAGAAGACTCTATGAGCTACTCGTGCGAGATGTCAAGAAAATAGAAGCTGGTCAAGTCCAAATACCCCTCTACAAGAACGTGGGTTGTAATGGCAGAGGGTATGCTGACCAGAAGAGGTAA

mRNA sequence

ATGGCATCAAGCTCTGTCACGTCGGCGGCACGTGGGTTTTACTCATCCTGGACAAAAAAAGAAAACAAGAAATTTGAGGAGGCATTAGCCTACTATGACCAGGACACACCAGACCGTTTTGAGAAGGTAGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGCAAGAAGACTCTATGAGCTACTCGTGCGAGATGTCAAGAAAATAGAAGCTGGTCAAGTCCAAATACCCCTCTACAAGAACGTGGGTTGTAATGGCAGAGGGTATGCTGACCAGAAGAGGTAA

Coding sequence (CDS)

ATGGCATCAAGCTCTGTCACGTCGGCGGCACGTGGGTTTTACTCATCCTGGACAAAAAAAGAAAACAAGAAATTTGAGGAGGCATTAGCCTACTATGACCAGGACACACCAGACCGTTTTGAGAAGGTAGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGCAAGAAGACTCTATGAGCTACTCGTGCGAGATGTCAAGAAAATAGAAGCTGGTCAAGTCCAAATACCCCTCTACAAGAACGTGGGTTGTAATGGCAGAGGGTATGCTGACCAGAAGAGGTAA

Homology

[Close]

BLAST of CmoCh09G001500.1 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 53/86 (61.63%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MAS+S++S+A     SWT+KENK FE ALA YDQDTPDR+  VARAV GGK+AEE RR Y
Sbjct: 1  MASNSMSSSA-----SWTRKENKLFERALATYDQDTPDRWHNVARAV-GGKSAEEVRRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCN 87
          ELL+RDV  IE+G+   P Y++ G N
Sbjct: 61 ELLIRDVNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of CmoCh09G001500.1 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-18
Identity = 56/98 (57.14%), Postives = 66/98 (67.35%), Query Frame = 1


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MAS S++S   G   SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y
Sbjct: 1  MASGSMSSYGSG---SWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCN---GRGYADQKR 96
          +LLVRD++ IE G V  P YK    N   GR   ++KR
Sbjct: 61 DLLVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKR 94

[Close]

BLAST of CmoCh09G001500.1 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-18
Identity = 53/97 (54.64%), Postives = 68/97 (70.10%), Query Frame = 1


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS++S + G   SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R Y
Sbjct: 1  MASSSMSSQSSG---SWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVG--CNGRGYADQKR 96
          ELLV+D+  IE G V  P Y+  G   NGR   ++KR
Sbjct: 61 ELLVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR 93

[Close]

BLAST of CmoCh09G001500.1 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-16
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 1


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS++S+     SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y
Sbjct: 1  MASSSMSSS-----SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYK--NVGCNGRGYAD 93
          ++LV D+  IE   V +P YK  +VG   RG  D
Sbjct: 61 DILVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDD 88

[Close]

BLAST of CmoCh09G001500.1 vs. Swiss-Prot
Match: RADL4_ARATH (Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.6e-16
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 1


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS+++      SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R Y
Sbjct: 1  MASSSMST------SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKN 83
          ELL+RDV  IE+G+   P Y+N
Sbjct: 61 ELLLRDVNDIESGRYPQPRYRN 75

[Close]

BLAST of CmoCh09G001500.1 vs. TrEMBL
Match: A0A0A0LGL4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G857080 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 6.9e-40
Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = 1


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLY
Sbjct: 1  MASSSVTST-HGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
          ELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+R
Sbjct: 61 ELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 94

[Close]

BLAST of CmoCh09G001500.1 vs. TrEMBL
Match: A0A103YCJ7_CYNCS (Homeodomain-like protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_015085 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-21
Identity = 55/95 (57.89%), Postives = 79/95 (83.16%), Query Frame = 1


Query: 1   MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
           MASSS+TS+ R   SSWT ++NK+FEEALAYY++D+PDR+  +ARAV GGK+ EE +R Y
Sbjct: 115 MASSSMTSS-RSSGSSWTPRQNKQFEEALAYYNKDSPDRWHNIARAV-GGKSVEEVKRHY 174

Query: 61  ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
           E+LVRD+ +IE+ QV +P Y+++G NGRG+A+++R
Sbjct: 175 EILVRDIMQIESDQVPLPNYRDIGSNGRGFANEQR 207

[Close]

BLAST of CmoCh09G001500.1 vs. TrEMBL
Match: A0A068UIQ1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024780001 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.4e-21
Identity = 56/95 (58.95%), Postives = 76/95 (80.00%), Query Frame = 1


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS+TS+ R    SWT K+NK+FEEALA YD+DTPDR+  +ARAV GGK+ EE RR Y
Sbjct: 1  MASSSMTSS-RSSSQSWTAKQNKQFEEALATYDKDTPDRWYNIARAV-GGKSEEEVRRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
          E+LV+D+ +IE+ QV +P Y+++  NGRGYA+++R
Sbjct: 61 EVLVKDIMQIESDQVPLPNYRSMASNGRGYANEQR 93

[Close]

BLAST of CmoCh09G001500.1 vs. TrEMBL
Match: A0A162A4Z7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019534 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-20
Identity = 53/95 (55.79%), Postives = 77/95 (81.05%), Query Frame = 1


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MAS+S+TS+ R   S+WT+++NK+FEEALA YD+DTPDR+  +ARAV GGK+ EE +R Y
Sbjct: 1  MASNSITSS-RNCGSTWTQRQNKQFEEALATYDRDTPDRWHNIARAV-GGKSTEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
          ++LV+D+ +IE+ QV +P YKN G NGRG+ +++R
Sbjct: 61 DILVKDIMQIESDQVPLPNYKNTGGNGRGFNNEQR 93

[Close]

BLAST of CmoCh09G001500.1 vs. TrEMBL
Match: A0A022R1R6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016932mg PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-18
Identity = 53/95 (55.79%), Postives = 71/95 (74.74%), Query Frame = 1


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS++S++R   SSWT K+NK+FEEA+A +D+DTPDR+  +AR V  GK+AEE RR Y
Sbjct: 1  MASSSMSSSSRNSASSWTAKQNKQFEEAIAMFDRDTPDRWHNIARQV-SGKSAEEVRRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
          E L +D+ KIE  QV IP YK++  N RGY++  R
Sbjct: 61 EALEKDIMKIETDQVPIPNYKSIS-NARGYSNDHR 93

[Close]

BLAST of CmoCh09G001500.1 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 92.0 bits (227), Expect = 2.1e-19
Identity = 53/97 (54.64%), Postives = 68/97 (70.10%), Query Frame = 1


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS++S + G   SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R Y
Sbjct: 1  MASSSMSSQSSG---SWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVG--CNGRGYADQKR 96
          ELLV+D+  IE G V  P Y+  G   NGR   ++KR
Sbjct: 61 ELLVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR 93

[Close]

BLAST of CmoCh09G001500.1 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 92.0 bits (227), Expect = 2.1e-19
Identity = 56/98 (57.14%), Postives = 66/98 (67.35%), Query Frame = 1


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MAS S++S   G   SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y
Sbjct: 1  MASGSMSSYGSG---SWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCN---GRGYADQKR 96
          +LLVRD++ IE G V  P YK    N   GR   ++KR
Sbjct: 61 DLLVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKR 94

[Close]

BLAST of CmoCh09G001500.1 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-17
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 1


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS++S+     SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y
Sbjct: 1  MASSSMSSS-----SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYK--NVGCNGRGYAD 93
          ++LV D+  IE   V +P YK  +VG   RG  D
Sbjct: 61 DILVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDD 88

[Close]

BLAST of CmoCh09G001500.1 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 84.3 bits (207), Expect = 4.3e-17
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 1


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS+++      SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R Y
Sbjct: 1  MASSSMST------SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKN 83
          ELL+RDV  IE+G+   P Y+N
Sbjct: 61 ELLLRDVNDIESGRYPQPRYRN 75

[Close]

BLAST of CmoCh09G001500.1 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 83.2 bits (204), Expect = 9.6e-17
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1


Query: 6  VTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVR 65
          + S +R   S WT  +NK FE ALA YD+DTPDR+  VA+AV GGKT EE +R Y++LV 
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVE 60

Query: 66 DVKKIEAGQVQIPLYKNVGCNGRGYAD 93
          D+  IE G+V +P YK    N R   D
Sbjct: 61 DLINIETGRVPLPNYKTFESNSRSIND 86

[Close]

BLAST of CmoCh09G001500.1 vs. NCBI nr
Match: gi|659133100|ref|XP_008466554.1| (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 9.9e-40
Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = 1


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLY
Sbjct: 1  MASSSVTST-HGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
          ELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+R
Sbjct: 61 ELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 94

[Close]

BLAST of CmoCh09G001500.1 vs. NCBI nr
Match: gi|747073426|ref|XP_011083673.1| (PREDICTED: protein RADIALIS-like 3 [Sesamum indicum])

HSP 1 Score: 112.8 bits (281), Expect = 3.2e-22
Identity = 59/95 (62.11%), Postives = 76/95 (80.00%), Query Frame = 1


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS+TSA RG  S+WT K+NK+FEEALA YD+DTPDR+  +ARAV GGK+AEE RR Y
Sbjct: 1  MASSSMTSA-RGSASAWTSKQNKQFEEALAMYDKDTPDRWHNIARAV-GGKSAEEVRRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
          E+LV+D+ +IE  QV IP Y+ +G N RGY +++R
Sbjct: 61 EILVKDIMQIETDQVPIPNYRAMGSNSRGYGNEQR 93

[Close]

BLAST of CmoCh09G001500.1 vs. NCBI nr
Match: gi|976921930|gb|KVI06567.1| (Homeodomain-like protein, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-21
Identity = 55/95 (57.89%), Postives = 79/95 (83.16%), Query Frame = 1


Query: 1   MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
           MASSS+TS+ R   SSWT ++NK+FEEALAYY++D+PDR+  +ARAV GGK+ EE +R Y
Sbjct: 115 MASSSMTSS-RSSGSSWTPRQNKQFEEALAYYNKDSPDRWHNIARAV-GGKSVEEVKRHY 174

Query: 61  ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
           E+LVRD+ +IE+ QV +P Y+++G NGRG+A+++R
Sbjct: 175 EILVRDIMQIESDQVPLPNYRDIGSNGRGFANEQR 207

[Close]

BLAST of CmoCh09G001500.1 vs. NCBI nr
Match: gi|661889060|emb|CDP07503.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-20
Identity = 56/95 (58.95%), Postives = 76/95 (80.00%), Query Frame = 1


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS+TS+ R    SWT K+NK+FEEALA YD+DTPDR+  +ARAV GGK+ EE RR Y
Sbjct: 1  MASSSMTSS-RSSSQSWTAKQNKQFEEALATYDKDTPDRWYNIARAV-GGKSEEEVRRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
          E+LV+D+ +IE+ QV +P Y+++  NGRGYA+++R
Sbjct: 61 EVLVKDIMQIESDQVPLPNYRSMASNGRGYANEQR 93

[Close]

BLAST of CmoCh09G001500.1 vs. NCBI nr
Match: gi|1021038509|gb|KZM96292.1| (hypothetical protein DCAR_019534 [Daucus carota subsp. sativus])

HSP 1 Score: 106.3 bits (264), Expect = 3.0e-20
Identity = 53/95 (55.79%), Postives = 77/95 (81.05%), Query Frame = 1


Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MAS+S+TS+ R   S+WT+++NK+FEEALA YD+DTPDR+  +ARAV GGK+ EE +R Y
Sbjct: 1  MASNSITSS-RNCGSTWTQRQNKQFEEALATYDRDTPDRWHNIARAV-GGKSTEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
          ++LV+D+ +IE+ QV +P YKN G NGRG+ +++R
Sbjct: 61 DILVKDIMQIESDQVPLPNYKNTGGNGRGFNNEQR 93

The following BLAST results are available for this feature:

BLAST of CmoCh09G001500.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RADL3_ARATH	1.3e-18	61.63	Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1	[more]
RADL2_ARATH	3.7e-18	57.14	Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1	[more]
RADL1_ARATH	3.7e-18	54.64	Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1	[more]
RADL5_ARATH	2.6e-16	53.19	Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1	[more]
RADL4_ARATH	7.6e-16	56.10	Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1	[more]

BLAST of CmoCh09G001500.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGL4_CUCSA	6.9e-40	90.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G857080 PE=4 SV=1	[more]
A0A103YCJ7_CYNCS	1.1e-21	57.89	Homeodomain-like protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_...	[more]
A0A068UIQ1_COFCA	9.4e-21	58.95	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024780001 PE=4 SV=1	[more]
A0A162A4Z7_DAUCA	2.1e-20	55.79	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019534 PE=4 SV=1	[more]
A0A022R1R6_ERYGU	1.5e-18	55.79	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016932mg PE=4 SV=1	[more]

BLAST of CmoCh09G001500.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39250.1	2.1e-19	54.64	RAD-like 1	[more]
AT2G21650.1	2.1e-19	57.14	Homeodomain-like superfamily protein	[more]
AT1G19510.1	1.5e-17	53.19	RAD-like 5	[more]
AT2G18328.1	4.3e-17	56.10	RAD-like 4	[more]
AT1G75250.1	9.6e-17	50.57	RAD-like 6	[more]

BLAST of CmoCh09G001500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133100\|ref\|XP_008466554.1\|	9.9e-40	90.53	PREDICTED: protein RADIALIS-like 4 [Cucumis melo]	[more]
gi\|747073426\|ref\|XP_011083673.1\|	3.2e-22	62.11	PREDICTED: protein RADIALIS-like 3 [Sesamum indicum]	[more]
gi\|976921930\|gb\|KVI06567.1\|	1.6e-21	57.89	Homeodomain-like protein, partial [Cynara cardunculus var. scolymus]	[more]
gi\|661889060\|emb\|CDP07503.1\|	1.3e-20	58.95	unnamed protein product [Coffea canephora]	[more]
gi\|1021038509\|gb\|KZM96292.1\|	3.0e-20	55.79	hypothetical protein DCAR_019534 [Daucus carota subsp. sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh09G001500	CmoCh09G001500	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh09G001500.1	CmoCh09G001500.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh09G001500.1.exon.1	CmoCh09G001500.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh09G001500.1.CDS.1	CmoCh09G001500.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 14..70 score: 3.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 15..71 score: 8.78
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 17..90 score: 5.3
None	No IPR available	PANTHER	PTHR24078:SF177	PROTEIN DNJ-23-RELATED	coord: 17..90 score: 5.3