CmoCh08G002920.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTGTTTGCCGACATGTCGTTATCGTCGTCGTCGTCTGATTCGAGCCCTTGCTTGTCTCCGGAGATGCACGTTAAGGAGGAGATAGAAGACGGCGATATCATCGTGCAAGACGCTCAGACACAGAAGGAGGAGAGGGCTTATAGAGGGGTGCGGCGGAGGCCGTGGGGGAAGTACGCAGCCGAGATAAGAGACTCGACTCGACAAGGGGTGAGGGTTTGGTTGGGGACGTTTGATAGTGCGGAGGCTGCAGCATTGGCTTATGACCAAGCCGCATTTTGCATGAGAGGTGCATTAGCCACACTCAATTTTCCGGTGGAGGTTGTTCGAGAGTCGCTCTATGAAATGAAGTATCGATGGGAGGTCGGGTGCTCGCCTGTCTTAGCGCTCAAACGACGTCACACGATACGGAGGAAGAAGATGGCAGAAGCCGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAAAATGTAGTTGTTTTTGAGGATTTGGGTGTTGAGTACTTAGAAGAACTATTAAGTTTGACTTCTTAA ATGTTGTTTGCCGACATGTCGTTATCGTCGTCGTCGTCTGATTCGAGCCCTTGCTTGTCTCCGGAGATGCACGTTAAGGAGGAGATAGAAGACGGCGATATCATCGTGCAAGACGCTCAGACACAGAAGGAGGAGAGGGCTTATAGAGGGGTGCGGCGGAGGCCGTGGGGGAAGTACGCAGCCGAGATAAGAGACTCGACTCGACAAGGGGTGAGGGTTTGGTTGGGGACGTTTGATAGTGCGGAGGCTGCAGCATTGGCTTATGACCAAGCCGCATTTTGCATGAGAGGTGCATTAGCCACACTCAATTTTCCGGTGGAGGTTGTTCGAGAGTCGCTCTATGAAATGAAGTATCGATGGGAGGTCGGGTGCTCGCCTGTCTTAGCGCTCAAACGACGTCACACGATACGGAGGAAGAAGATGGCAGAAGCCGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAAAATGTAGTTGTTTTTGAGGATTTGGGTGTTGAGTACTTAGAAGAACTATTAAGTTTGACTTCTTAA ATGTTGTTTGCCGACATGTCGTTATCGTCGTCGTCGTCTGATTCGAGCCCTTGCTTGTCTCCGGAGATGCACGTTAAGGAGGAGATAGAAGACGGCGATATCATCGTGCAAGACGCTCAGACACAGAAGGAGGAGAGGGCTTATAGAGGGGTGCGGCGGAGGCCGTGGGGGAAGTACGCAGCCGAGATAAGAGACTCGACTCGACAAGGGGTGAGGGTTTGGTTGGGGACGTTTGATAGTGCGGAGGCTGCAGCATTGGCTTATGACCAAGCCGCATTTTGCATGAGAGGTGCATTAGCCACACTCAATTTTCCGGTGGAGGTTGTTCGAGAGTCGCTCTATGAAATGAAGTATCGATGGGAGGTCGGGTGCTCGCCTGTCTTAGCGCTCAAACGACGTCACACGATACGGAGGAAGAAGATGGCAGAAGCCGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAAAATGTAGTTGTTTTTGAGGATTTGGGTGTTGAGTACTTAGAAGAACTATTAAGTTTGACTTCTTAA
BLAST of CmoCh08G002920.1 vs. Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=1 SV=2) HSP 1 Score: 172.2 bits (435), Expect = 5.2e-42 Identity = 89/143 (62.24%), Postives = 112/143 (78.32%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. Swiss-Prot
Match: ERF93_ARATH (Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 1.2e-38 Identity = 94/185 (50.81%), Postives = 120/185 (64.86%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 2.2e-32 Identity = 86/182 (47.25%), Postives = 116/182 (63.74%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 2.0e-22 Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 7.2e-20 Identity = 48/64 (75.00%), Postives = 51/64 (79.69%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. TrEMBL
Match: A0A0A0K4U4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G375820 PE=4 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 5.5e-67 Identity = 147/191 (76.96%), Postives = 162/191 (84.82%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. TrEMBL
Match: A0A0A0L7G2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G389850 PE=4 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 2.0e-48 Identity = 108/157 (68.79%), Postives = 126/157 (80.25%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. TrEMBL
Match: A0A067JRM4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17700 PE=4 SV=1) HSP 1 Score: 190.3 bits (482), Expect = 2.0e-45 Identity = 96/138 (69.57%), Postives = 119/138 (86.23%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. TrEMBL
Match: B9T293_RICCO (Ethylene-responsive transcription factor 1B, putative (Fragment) OS=Ricinus communis GN=RCOM_0463380 PE=4 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 3.5e-45 Identity = 106/174 (60.92%), Postives = 132/174 (75.86%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. TrEMBL
Match: A0A061DQT7_THECC (Ethylene response factor 1 OS=Theobroma cacao GN=TCM_004056 PE=4 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 2.2e-44 Identity = 102/175 (58.29%), Postives = 134/175 (76.57%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. TAIR10
Match: AT3G23240.1 (AT3G23240.1 ethylene response factor 1) HSP 1 Score: 172.2 bits (435), Expect = 2.9e-43 Identity = 89/143 (62.24%), Postives = 112/143 (78.32%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. TAIR10
Match: AT2G31230.1 (AT2G31230.1 ethylene-responsive element binding factor 15) HSP 1 Score: 161.0 bits (406), Expect = 6.7e-40 Identity = 94/185 (50.81%), Postives = 120/185 (64.86%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. TAIR10
Match: AT1G06160.1 (AT1G06160.1 octadecanoid-responsive Arabidopsis AP2/ERF 59) HSP 1 Score: 140.2 bits (352), Expect = 1.2e-33 Identity = 86/182 (47.25%), Postives = 116/182 (63.74%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. TAIR10
Match: AT5G43410.1 (AT5G43410.1 Integrase-type DNA-binding superfamily protein) HSP 1 Score: 98.6 bits (244), Expect = 4.1e-21 Identity = 48/64 (75.00%), Postives = 51/64 (79.69%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. TAIR10
Match: AT5G61600.1 (AT5G61600.1 ethylene response factor 104) HSP 1 Score: 97.8 bits (242), Expect = 7.0e-21 Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. NCBI nr
Match: gi|449462495|ref|XP_004148976.1| (PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis sativus]) HSP 1 Score: 261.9 bits (668), Expect = 7.9e-67 Identity = 147/191 (76.96%), Postives = 162/191 (84.82%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. NCBI nr
Match: gi|659100760|ref|XP_008451254.1| (PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis melo]) HSP 1 Score: 250.4 bits (638), Expect = 2.4e-63 Identity = 145/194 (74.74%), Postives = 159/194 (81.96%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. NCBI nr
Match: gi|449468546|ref|XP_004151982.1| (PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis sativus]) HSP 1 Score: 200.3 bits (508), Expect = 2.8e-48 Identity = 108/157 (68.79%), Postives = 126/157 (80.25%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. NCBI nr
Match: gi|659093226|ref|XP_008447432.1| (PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis melo]) HSP 1 Score: 199.1 bits (505), Expect = 6.3e-48 Identity = 107/155 (69.03%), Postives = 126/155 (81.29%), Query Frame = 1
BLAST of CmoCh08G002920.1 vs. NCBI nr
Match: gi|1009173946|ref|XP_015868087.1| (PREDICTED: ethylene-responsive transcription factor 1B-like [Ziziphus jujuba]) HSP 1 Score: 193.0 bits (489), Expect = 4.5e-46 Identity = 98/154 (63.64%), Postives = 125/154 (81.17%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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