CmoCh06G008440.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G008440.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Peptidyl-prolyl cis-trans isomerase-like 3
Location	Cmo_Chr06 : 4697035 .. 4699467 (-)
Sequence length	1801

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGCAACGACGTCGTTTTCATCTCCGTACTGCAATTCAGCTCGGCTTCATCGTAATCGTTGACTAGGATCTCGTCCATTTTGCTCTTTTGCCAATGCTCCGGCCTTCATTTCAATGTCGTAATTCATCTATAACACAGAAATTTCGAAATTCGGAAATTCTATGTTCGAAATCCGAGCAAAAGCCTCATAAATTTCCAGTCAACGCTCGTCTCGCCAGCCCTTGTTCTTGAATTCGTTCCTCCGATCTCAGTTACCTGTATTAGCATCTGGGTTCGGCAATTCTTTGCCATTTCTCAGATGGGTCGTAAGCAAATCGACCAAGAAGCCTCTCGTTTAACCCTACCGATCCTAATTTTGGTTAGTTTCATCTCCTGCGCCGCCGTGTACACGTTTCTCCCTTTTTTGTTCAGACTCAACGGCGGCGATCCTTCCAAACTTGAATCGTTCGCAGTGATTAGAGATGGTGATGCCGGAAATTTGGAAGGTGGAGCCGAGGAATGTTGCCGGGGAATCGAGAATTTGGAGTATTGGGGTCCGGCTGTGAAGTGGGGTTCTGAATTTAAGTTCAATTCCTCTGAGCTGTGTTGTAAGGCTTGTAAAGCTATGTGCAACGGCAATGATGGGCCTTGCTTGTGTGATACTTGGGTTTATTGTGGAAATCGAAAGGAATGTGGTTCAAAATTTGGTGAAGTATGTTGAAATCTTGTCTAGTTTTTCACTTTTTCTTCCTAATCATTACCTTAATCATGTGTATTTGGTTTGATTAGATCCTTTATTTTAGAGTTCTGTTCTTCAAATTCTGTGGTTTCAATGAGAGATATTAAGCTCTGTTGAATTCATGTATGATTTTATGTTTATGTCAATAGTGTTGGCTGAAGAAACAGAAGGATACATTGGCCCCTGATCGGCAGGAAGGAGGGACAACAAGTATTTGGACATCTGGGCTTATCTTTGGAAGAGGAGAGGTTTTGAATCTCTCAAACATAAAGTTTATGATTGTTTTAACAATTGTTTGTATTGTTTTCAATGTTCTATCCCAAATTTTGTAGGCTTTTCCAGAAGGAAATGGCCATTTGTTTGATCATTAACCCATTATATATGTATCTATGGTTATGATATCTTCAGCTTCTTGTCTATTGATGAGTCTTCAATGGTTTGTTTCCTAGGGAATCGTTGCGTTGGAGACCGACCATGGCACGCTTCATATCAAGGTAACCGTCCTTGCTTGTATGTGCTCTTAGTTACCTTCCTAACTCGTGTTCTTAGGGGTGAGGAGACTCGTGTTCGTTATTTGTTTTAATGCTTCGTATTCTGAGGAAACTTTCGTCTGTTCGTATTCGTCGATTGCATGATTGAATTGTTGAATATCAGAATGTTCTTGACAATAGAAACTTCAAGATCTTACCCATATAACTGTTACATTTTTGTGCATTCTGAGATAGTGTTTTTGGTTATACCCTGTTTATGGACTCTGATAGCATTTAGAACGCTTCCCCCTGTCGTTTTCACGTGTCGTTATAATGCGAAAATTTGCCTCGTTCACTTGTGCAGCATCTATTCATAGCGTTTGTGACATATTTCTTAACTTATGCAGCTCTTCCCTGACTGTGCTCCCCATTCTGTTGCCTACATTCTTGAGTTGTTGGAATTACGACATTGCGCTGGTTGCCACTTCTACCGTGCCGAGGGTCGAGGCCAATCTTGGGACTCGAAAGGAAACCCCATAGAAAACGTAAGGATGTCTTTCGTGTAGCTCCTTTTGCACACATTACACTTTTAAAAAGATAACTTAAGAGGATGAACTAGATATCCATATGAGGTGCAACAACCATGTTCTTATTCAAATTTCTTTGAACCACTAGGCTCCTTTAGGTCCTCCGTTTGCACTTATTCAAGGAACACTGGAAACCCAAGGGGAACCATTTAAGAAGATTTCCCCTGAAGTTTGCCCATACATAAAGCGCGGTTCGGTAGCGTGGGTTGGTTCGGGACCGGAATTCTTCATTAGTCTTGCAAACCACCAAGAATGGAATAAAGTGTACACGGTGTTCGGTTCGGTTCTCCCAGAAGACATGGAAGTTGCAGAGAAAATTGCTGGACTTCCTACCAAGCCCGATGTTTGGAACAATGTCAACGTTTCGGTGTTGCAAGAACACGTTCCGTTGCGGTTGAAACGAATGAAGAAGAGTCATGGAGATCTGAACATGAAATCAGATTGATATTTTGGTTATACCACTTCTTTTTCACATAATGTTCTTGAGTTTCTTTAAGTTCACTTATTTTTCTTTTAGCTGTTTCACTCTTATATTCCATTTTGGACAGTTTTTATTATGCCTCATAAAGCTATCATAGTTTCTTACTCATAAGAAAAAGAAAACAAAATCATTTCTCTTTCGAAGTGTTTAGTACCACATTTAACGGTTTAAGAAGCA

mRNA sequence

CCGCAACGACGTCGTTTTCATCTCCGTACTGCAATTCAGCTCGGCTTCATCGTAATCGTTGACTAGGATCTCGTCCATTTTGCTCTTTTGCCAATGCTCCGGCCTTCATTTCAATGTCGTAATTCATCTATAACACAGAAATTTCGAAATTCGGAAATTCTATGTTCGAAATCCGAGCAAAAGCCTCATAAATTTCCAGTCAACGCTCGTCTCGCCAGCCCTTGTTCTTGAATTCGTTCCTCCGATCTCAGTTACCTGTATTAGCATCTGGGTTCGGCAATTCTTTGCCATTTCTCAGATGGGTCGTAAGCAAATCGACCAAGAAGCCTCTCGTTTAACCCTACCGATCCTAATTTTGGTTAGTTTCATCTCCTGCGCCGCCGTGTACACGTTTCTCCCTTTTTTGTTCAGACTCAACGGCGGCGATCCTTCCAAACTTGAATCGTTCGCAGTGATTAGAGATGGTGATGCCGGAAATTTGGAAGGTGGAGCCGAGGAATGTTGCCGGGGAATCGAGAATTTGGAGTATTGGGGTCCGGCTGTGAAGTGGGGTTCTGAATTTAAGTTCAATTCCTCTGAGCTGTGTTGTAAGGCTTGTAAAGCTATGTGCAACGGCAATGATGGGCCTTGCTTGTGTGATACTTGGGTTTATTGTGGAAATCGAAAGGAATGTGGTTCAAAATTTGGTGAATGTTGGCTGAAGAAACAGAAGGATACATTGGCCCCTGATCGGCAGGAAGGAGGGACAACAAGGAATCGTTGCGTTGGAGACCGACCATGGCACGCTTCATATCAAGGTAACCGTCCTTGCTTGTATGTGCTCTTAGTTACCTTCCTAACTCGTGTTCTTAGGGGTGAGGAGACTCGTGTTCGAAACTTTCGTCTGTTCGTATTCGTCGATTGCATGATTGAATTGTTGAATATCAGAATGTTCTTGACAATAGAAACTTCAAGATCTTACCCATATAACTGTTACATTTTTGTGCATTCTGAGATAGTGTTTTTGGTTATACCCTGTTTATGGACTCTGATAGCATTTAGAACGCTTCCCCCTGTCGTTTTCACGTGTCGTTATAATGCGAAAATTTGCCTCCTCTTCCCTGACTGTGCTCCCCATTCTGTTGCCTACATTCTTGAGTTGTTGGAATTACGACATTGCGCTGGTTGCCACTTCTACCGTGCCGAGGGTCGAGGCCAATCTTGGGACTCGAAAGGAAACCCCATAGAAAACGCTCCTTTAGGTCCTCCGTTTGCACTTATTCAAGGAACACTGGAAACCCAAGGGGAACCATTTAAGAAGATTTCCCCTGAAGTTTGCCCATACATAAAGCGCGGTTCGGTAGCGTGGGTTGGTTCGGGACCGGAATTCTTCATTAGTCTTGCAAACCACCAAGAATGGAATAAAGTGTACACGGTGTTCGGTTCGGTTCTCCCAGAAGACATGGAAGTTGCAGAGAAAATTGCTGGACTTCCTACCAAGCCCGATGTTTGGAACAATGTCAACGTTTCGGTGTTGCAAGAACACGTTCCGTTGCGGTTGAAACGAATGAAGAAGAGTCATGGAGATCTGAACATGAAATCAGATTGATATTTTGGTTATACCACTTCTTTTTCACATAATGTTCTTGAGTTTCTTTAAGTTCACTTATTTTTCTTTTAGCTGTTTCACTCTTATATTCCATTTTGGACAGTTTTTATTATGCCTCATAAAGCTATCATAGTTTCTTACTCATAAGAAAAAGAAAACAAAATCATTTCTCTTTCGAAGTGTTTAGTACCACATTTAACGGTTTAAGAAGCA

Coding sequence (CDS)

ATGGGTCGTAAGCAAATCGACCAAGAAGCCTCTCGTTTAACCCTACCGATCCTAATTTTGGTTAGTTTCATCTCCTGCGCCGCCGTGTACACGTTTCTCCCTTTTTTGTTCAGACTCAACGGCGGCGATCCTTCCAAACTTGAATCGTTCGCAGTGATTAGAGATGGTGATGCCGGAAATTTGGAAGGTGGAGCCGAGGAATGTTGCCGGGGAATCGAGAATTTGGAGTATTGGGGTCCGGCTGTGAAGTGGGGTTCTGAATTTAAGTTCAATTCCTCTGAGCTGTGTTGTAAGGCTTGTAAAGCTATGTGCAACGGCAATGATGGGCCTTGCTTGTGTGATACTTGGGTTTATTGTGGAAATCGAAAGGAATGTGGTTCAAAATTTGGTGAATGTTGGCTGAAGAAACAGAAGGATACATTGGCCCCTGATCGGCAGGAAGGAGGGACAACAAGGAATCGTTGCGTTGGAGACCGACCATGGCACGCTTCATATCAAGGTAACCGTCCTTGCTTGTATGTGCTCTTAGTTACCTTCCTAACTCGTGTTCTTAGGGGTGAGGAGACTCGTGTTCGAAACTTTCGTCTGTTCGTATTCGTCGATTGCATGATTGAATTGTTGAATATCAGAATGTTCTTGACAATAGAAACTTCAAGATCTTACCCATATAACTGTTACATTTTTGTGCATTCTGAGATAGTGTTTTTGGTTATACCCTGTTTATGGACTCTGATAGCATTTAGAACGCTTCCCCCTGTCGTTTTCACGTGTCGTTATAATGCGAAAATTTGCCTCCTCTTCCCTGACTGTGCTCCCCATTCTGTTGCCTACATTCTTGAGTTGTTGGAATTACGACATTGCGCTGGTTGCCACTTCTACCGTGCCGAGGGTCGAGGCCAATCTTGGGACTCGAAAGGAAACCCCATAGAAAACGCTCCTTTAGGTCCTCCGTTTGCACTTATTCAAGGAACACTGGAAACCCAAGGGGAACCATTTAAGAAGATTTCCCCTGAAGTTTGCCCATACATAAAGCGCGGTTCGGTAGCGTGGGTTGGTTCGGGACCGGAATTCTTCATTAGTCTTGCAAACCACCAAGAATGGAATAAAGTGTACACGGTGTTCGGTTCGGTTCTCCCAGAAGACATGGAAGTTGCAGAGAAAATTGCTGGACTTCCTACCAAGCCCGATGTTTGGAACAATGTCAACGTTTCGGTGTTGCAAGAACACGTTCCGTTGCGGTTGAAACGAATGAAGAAGAGTCATGGAGATCTGAACATGAAATCAGATTGA

Homology

[Close]

BLAST of CmoCh06G008440.1 vs. TrEMBL
Match: A0A0A0L227_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017120 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 6.6e-82
Identity = 143/164 (87.20%), Postives = 154/164 (93.90%), Query Frame = 1


Query: 266 LFPDCAPHSVAYILELLELRHCAGCHFYRAEGRGQSWDSKGNPIENAPLGPPFALIQGTL 325
           LFPDCAPHSVAYILELL LRHCAGCHFYRAEGRG+SWDSKGN IENAPLGPPFAL+QGTL
Sbjct: 180 LFPDCAPHSVAYILELLGLRHCAGCHFYRAEGRGESWDSKGNHIENAPLGPPFALVQGTL 239

Query: 326 ETQGEPFKKISPEVCPYIKRGSVAWVGSGPEFFISLANHQEWNKVYTVFGSVLPEDMEVA 385
           E+QG  FKKI  EVCPYIKRGSVAWVGSGPEFFISLANHQEWNKVYTVFGS+LPEDME+A
Sbjct: 240 ESQGIQFKKIPVEVCPYIKRGSVAWVGSGPEFFISLANHQEWNKVYTVFGSILPEDMEIA 299

Query: 386 EKIAGLPTKPDVWNNVNVSVLQEHVPLRLKRMKKSHGDLNMKSD 430
           EKIA LPTKPDVWNN+NVS+LQ+ V LR+ RMKKSHG+LN+KSD
Sbjct: 300 EKIARLPTKPDVWNNINVSLLQKPVSLRITRMKKSHGELNVKSD 343

[Close]

BLAST of CmoCh06G008440.1 vs. TrEMBL
Match: F6H7Y0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00040 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.4e-71
Identity = 129/164 (78.66%), Postives = 141/164 (85.98%), Query Frame = 1


Query: 266 LFPDCAPHSVAYILELLELRHCAGCHFYRAEGRGQSWDSKGNPIENAPLGPPFALIQGTL 325
           L PDCAPHSVAYILELL LRHCAGC FYRAE RG  WDS+GN I++APLGPPFALIQGTL
Sbjct: 178 LLPDCAPHSVAYILELLALRHCAGCQFYRAESRGMYWDSQGNHIKDAPLGPPFALIQGTL 237

Query: 326 ETQGEPFKKISPEVCPYIKRGSVAWVGSGPEFFISLANHQEWNKVYTVFGSVLPEDMEVA 385
           E  G  FKKI  E CP I+RGSVAWVGSGPEFFISLANHQEW KVYTVFGSVLPEDME+A
Sbjct: 238 EALGTTFKKIPTEDCPTIRRGSVAWVGSGPEFFISLANHQEWKKVYTVFGSVLPEDMEIA 297

Query: 386 EKIAGLPTKPDVWNNVNVSVLQEHVPLRLKRMKKSHGDLNMKSD 430
           EKIA LPTK DVWN +NVSVL+  +PLRL+RMKKS GDLN+ ++
Sbjct: 298 EKIAQLPTKLDVWNKINVSVLENPIPLRLRRMKKSEGDLNVATN 341

[Close]

BLAST of CmoCh06G008440.1 vs. TrEMBL
Match: F6HD70_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0591g00010 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.2e-70
Identity = 128/161 (79.50%), Postives = 138/161 (85.71%), Query Frame = 1


Query: 266 LFPDCAPHSVAYILELLELRHCAGCHFYRAEGRGQSWDSKGNPIENAPLGPPFALIQGTL 325
           L PDCAPHSVAYILELL LRHCAGC FYRAE RG  WDS+GN I++APLGPPFALIQGTL
Sbjct: 178 LLPDCAPHSVAYILELLALRHCAGCQFYRAESRGMYWDSQGNHIKDAPLGPPFALIQGTL 237

Query: 326 ETQGEPFKKISPEVCPYIKRGSVAWVGSGPEFFISLANHQEWNKVYTVFGSVLPEDMEVA 385
           E  G  FKKI  E CP + RGSVAWVGSGPEFFISLANHQEW KVYTVFGSVLPEDME+A
Sbjct: 238 EALGTTFKKIPTEDCPTLGRGSVAWVGSGPEFFISLANHQEWKKVYTVFGSVLPEDMEIA 297

Query: 386 EKIAGLPTKPDVWNNVNVSVLQEHVPLRLKRMKKSHGDLNM 427
           EKIA LPTK DVWN +NVSVL+  +PLRL+RMKKS GDLN+
Sbjct: 298 EKIAQLPTKLDVWNKINVSVLENPIPLRLRRMKKSEGDLNV 338

[Close]

BLAST of CmoCh06G008440.1 vs. TrEMBL
Match: B9N2V4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s08220g PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.0e-70
Identity = 124/160 (77.50%), Postives = 139/160 (86.88%), Query Frame = 1


Query: 266 LFPDCAPHSVAYILELLELRHCAGCHFYRAEGRGQSWDSKGNPIENAPLGPPFALIQGTL 325
           LFPDCAPHSVAYILELL LRHCAGC F+RAEGRGQ WD++GN I+ AP GPPFA+IQGTL
Sbjct: 174 LFPDCAPHSVAYILELLTLRHCAGCQFHRAEGRGQLWDAEGNHIKKAPFGPPFAMIQGTL 233

Query: 326 ETQGEPFKKISPEVCPYIKRGSVAWVGSGPEFFISLANHQEWNKVYTVFGSVLPEDMEVA 385
           E QG  FKKI  E CPYI+RGSVAWVGSGPEFFISLANHQEW K YTVFGSVLPEDME+A
Sbjct: 234 EAQGTSFKKIPTEECPYIRRGSVAWVGSGPEFFISLANHQEWKKAYTVFGSVLPEDMEIA 293

Query: 386 EKIAGLPTKPDVWNNVNVSVLQEHVPLRLKRMKKSHGDLN 426
           EKIA LPTK DVWNN+NVSVL++ +PL ++R+K   G+LN
Sbjct: 294 EKIAQLPTKSDVWNNINVSVLEKPLPLLVRRLKARQGNLN 333

[Close]

BLAST of CmoCh06G008440.1 vs. TrEMBL
Match: B9MUW2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s03180g PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 9.9e-70
Identity = 127/165 (76.97%), Postives = 141/165 (85.45%), Query Frame = 1


Query: 266 LFPDCAPHSVAYILELLELRHCAGCHFYRAEGRGQSWDSKGNPIENAPLGPPFALIQGTL 325
           LFPDCAPHSVAYILELL LRHCAGC FYRAEGRGQ WDS+GN I+ AP GPPFA+IQGTL
Sbjct: 174 LFPDCAPHSVAYILELLTLRHCAGCQFYRAEGRGQLWDSEGNHIKKAPFGPPFAIIQGTL 233

Query: 326 ETQGEPFKKISPEVCPYIKRGSVAWVGSGPEFFISLANHQEWNKVYTVFGSVLPEDMEVA 385
           E QG  FKKI  E CPYI+RGSVAWVGSGPEFFISLA+HQEW K YTVFGSVLPEDME+A
Sbjct: 234 EAQGTTFKKIPTEECPYIRRGSVAWVGSGPEFFISLADHQEWKKAYTVFGSVLPEDMEIA 293

Query: 386 EKIAGLPTKPDVWNNVNVSVLQEHVPLRLKRMKK-SHGDLNMKSD 430
           EKIA LPTK DVWNN+NVSVL++ VPL ++R+    + D N+KSD
Sbjct: 294 EKIAQLPTKSDVWNNINVSVLEKPVPLLVRRLDGWGNLDTNVKSD 338

[Close]

BLAST of CmoCh06G008440.1 vs. TAIR10
Match: AT4G17070.1 (AT4G17070.1 peptidyl-prolyl cis-trans isomerases)

HSP 1 Score: 232.6 bits (592), Expect = 4.4e-61
Identity = 105/153 (68.63%), Postives = 122/153 (79.74%), Query Frame = 1


Query: 266 LFPDCAPHSVAYILELLELRHCAGCHFYRAEGRGQSWDSKGNPIENAPLGPPFALIQGTL 325
           L P+CAPHSV YIL LL LRHCAGC F+RAE RG  WDS+GN ++NAP GPP+A+IQG L
Sbjct: 181 LHPECAPHSVYYILSLLTLRHCAGCQFHRAENRGSYWDSEGNHVKNAPFGPPYAMIQGIL 240

Query: 326 ETQGEPFKKISPEVCPYIKRGSVAWVGSGPEFFISLANHQEWNKVYTVFGSVLPEDMEVA 385
           + +G  F  I  E CP I RGSVAWVGSGPEFFISLANH EW + YTVFG VLPEDM+V 
Sbjct: 241 QAEGNIFTPIPTEHCPTISRGSVAWVGSGPEFFISLANHHEWKQSYTVFGLVLPEDMDVV 300

Query: 386 EKIAGLPTKPDVWNNVNVSVLQEHVPLRLKRMK 419
           E IAGLPT+ DVWN+VNVSVL++ V L ++RMK
Sbjct: 301 ETIAGLPTRADVWNSVNVSVLEKPVSLTVRRMK 333

[Close]

BLAST of CmoCh06G008440.1 vs. NCBI nr
Match: gi|449459010|ref|XP_004147239.1| (PREDICTED: uncharacterized protein LOC101206948 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 9.5e-82
Identity = 143/164 (87.20%), Postives = 154/164 (93.90%), Query Frame = 1


Query: 266 LFPDCAPHSVAYILELLELRHCAGCHFYRAEGRGQSWDSKGNPIENAPLGPPFALIQGTL 325
           LFPDCAPHSVAYILELL LRHCAGCHFYRAEGRG+SWDSKGN IENAPLGPPFAL+QGTL
Sbjct: 180 LFPDCAPHSVAYILELLGLRHCAGCHFYRAEGRGESWDSKGNHIENAPLGPPFALVQGTL 239

Query: 326 ETQGEPFKKISPEVCPYIKRGSVAWVGSGPEFFISLANHQEWNKVYTVFGSVLPEDMEVA 385
           E+QG  FKKI  EVCPYIKRGSVAWVGSGPEFFISLANHQEWNKVYTVFGS+LPEDME+A
Sbjct: 240 ESQGIQFKKIPVEVCPYIKRGSVAWVGSGPEFFISLANHQEWNKVYTVFGSILPEDMEIA 299

Query: 386 EKIAGLPTKPDVWNNVNVSVLQEHVPLRLKRMKKSHGDLNMKSD 430
           EKIA LPTKPDVWNN+NVS+LQ+ V LR+ RMKKSHG+LN+KSD
Sbjct: 300 EKIARLPTKPDVWNNINVSLLQKPVSLRITRMKKSHGELNVKSD 343

[Close]

BLAST of CmoCh06G008440.1 vs. NCBI nr
Match: gi|659095795|ref|XP_008448772.1| (PREDICTED: uncharacterized protein LOC103490837 [Cucumis melo])

HSP 1 Score: 308.9 bits (790), Expect = 1.4e-80
Identity = 142/164 (86.59%), Postives = 153/164 (93.29%), Query Frame = 1


Query: 266 LFPDCAPHSVAYILELLELRHCAGCHFYRAEGRGQSWDSKGNPIENAPLGPPFALIQGTL 325
           LFPDCAPHSVAYILELL LRHCAGCHFYRAEG+G+SWDSKGN IENAPLGPPFAL+QGTL
Sbjct: 180 LFPDCAPHSVAYILELLGLRHCAGCHFYRAEGKGESWDSKGNHIENAPLGPPFALVQGTL 239

Query: 326 ETQGEPFKKISPEVCPYIKRGSVAWVGSGPEFFISLANHQEWNKVYTVFGSVLPEDMEVA 385
           E+QG  FKKI  EVCPYIKRGSVAWVGSGPEFFISLANH+EWNKVYTVFGSVLPEDME+A
Sbjct: 240 ESQGIQFKKIPTEVCPYIKRGSVAWVGSGPEFFISLANHREWNKVYTVFGSVLPEDMEIA 299

Query: 386 EKIAGLPTKPDVWNNVNVSVLQEHVPLRLKRMKKSHGDLNMKSD 430
           EKIA LPTKPDVWNN+NVSVLQ+ V LR+ RMKKS G+LN+KSD
Sbjct: 300 EKIARLPTKPDVWNNINVSVLQKPVSLRITRMKKSRGELNVKSD 343

[Close]

BLAST of CmoCh06G008440.1 vs. NCBI nr
Match: gi|720059229|ref|XP_010274510.1| (PREDICTED: uncharacterized protein LOC104609823 [Nelumbo nucifera])

HSP 1 Score: 283.5 bits (724), Expect = 6.2e-73
Identity = 128/164 (78.05%), Postives = 140/164 (85.37%), Query Frame = 1


Query: 266 LFPDCAPHSVAYILELLELRHCAGCHFYRAEGRGQSWDSKGNPIENAPLGPPFALIQGTL 325
           LFPDCAPHSVAY LELL L HCAGC FYRAEGRG SWDSKGN I NAP GPPFALIQGTL
Sbjct: 185 LFPDCAPHSVAYTLELLGLHHCAGCQFYRAEGRGSSWDSKGNNINNAPFGPPFALIQGTL 244

Query: 326 ETQGEPFKKISPEVCPYIKRGSVAWVGSGPEFFISLANHQEWNKVYTVFGSVLPEDMEVA 385
           E QG  FKKI  E CP I+RGSVAWVGSGPEFFISLANH EW K YTVFGSVLPEDME+A
Sbjct: 245 EAQGTTFKKIPTEACPPIRRGSVAWVGSGPEFFISLANHNEWRKSYTVFGSVLPEDMEIA 304

Query: 386 EKIAGLPTKPDVWNNVNVSVLQEHVPLRLKRMKKSHGDLNMKSD 430
           EKIA LPTKPDVWNN+NVSVL++ +P R +R++ SHGDLN+ ++
Sbjct: 305 EKIAELPTKPDVWNNINVSVLEKPIPFRFRRIRTSHGDLNLNTN 348

[Close]

BLAST of CmoCh06G008440.1 vs. NCBI nr
Match: gi|720044253|ref|XP_010269830.1| (PREDICTED: uncharacterized protein LOC104606378 [Nelumbo nucifera])

HSP 1 Score: 278.5 bits (711), Expect = 2.0e-71
Identity = 132/190 (69.47%), Postives = 147/190 (77.37%), Query Frame = 1


Query: 239 PCLWT--LIAFRTLPPVVFTCRYNAKICLLFPDCAPHSVAYILELLELRHCAGCHFYRAE 298
           P +WT  LI  +    +     Y      LFPDCAPHSVAYILELL L HCAGC  YRAE
Sbjct: 156 PQIWTSGLIFGKGEGIIGLETEYGVLHIKLFPDCAPHSVAYILELLGLHHCAGCQLYRAE 215

Query: 299 GRGQSWDSKGNPIENAPLGPPFALIQGTLETQGEPFKKISPEVCPYIKRGSVAWVGSGPE 358
           GRG SWDS+GN I NAPLGPPFAL+QGTLE QG  FKKI  E CP I+RGSVAWVGSGPE
Sbjct: 216 GRGSSWDSEGNHISNAPLGPPFALLQGTLEAQGTTFKKIPTEACPAIRRGSVAWVGSGPE 275

Query: 359 FFISLANHQEWNKVYTVFGSVLPEDMEVAEKIAGLPTKPDVWNNVNVSVLQEHVPLRLKR 418
           FFISLANH EW K YTVFGSVLPEDME+AEKIA LPTKPD+WNN+ VSVL++ +PL  +R
Sbjct: 276 FFISLANHDEWKKAYTVFGSVLPEDMEIAEKIAQLPTKPDLWNNIEVSVLEKPIPLSFRR 335

Query: 419 MKKSHGDLNM 427
           +K SHGDLN+
Sbjct: 336 IKMSHGDLNL 345

[Close]

BLAST of CmoCh06G008440.1 vs. NCBI nr
Match: gi|743944292|ref|XP_011016665.1| (PREDICTED: uncharacterized protein LOC105120171 isoform X2 [Populus euphratica])

HSP 1 Score: 278.1 bits (710), Expect = 2.6e-71
Identity = 126/160 (78.75%), Postives = 139/160 (86.88%), Query Frame = 1


Query: 266 LFPDCAPHSVAYILELLELRHCAGCHFYRAEGRGQSWDSKGNPIENAPLGPPFALIQGTL 325
           LFPDCAPHSVAYILELL L HCAGC FYRAEGRGQ WD++GN I+ AP GPPFA+IQGTL
Sbjct: 71  LFPDCAPHSVAYILELLTLHHCAGCQFYRAEGRGQLWDAEGNHIKKAPFGPPFAMIQGTL 130

Query: 326 ETQGEPFKKISPEVCPYIKRGSVAWVGSGPEFFISLANHQEWNKVYTVFGSVLPEDMEVA 385
           E QG  FKKI  E CPYI+RGSVAWVGSGPEFFISLANHQEW K YTVFGSVLPEDME+A
Sbjct: 131 EAQGTSFKKIPTEECPYIRRGSVAWVGSGPEFFISLANHQEWKKAYTVFGSVLPEDMEIA 190

Query: 386 EKIAGLPTKPDVWNNVNVSVLQEHVPLRLKRMKKSHGDLN 426
           EKIA LPTK DVWNN+NVSVL++ VPL ++R+KK  G+LN
Sbjct: 191 EKIAQLPTKSDVWNNINVSVLEKPVPLLVRRLKKRQGNLN 230

The following BLAST results are available for this feature:

BLAST of CmoCh06G008440.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G008440.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L227_CUCSA	6.6e-82	87.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017120 PE=4 SV=1	[more]
F6H7Y0_VITVI	2.4e-71	78.66	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00040 PE=4 SV=...	[more]
F6HD70_VITVI	1.2e-70	79.50	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0591g00010 PE=4 SV=...	[more]
B9N2V4_POPTR	2.0e-70	77.50	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s08220g PE=4 SV=1	[more]
B9MUW2_POPTR	9.9e-70	76.97	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s03180g PE=4 SV=1	[more]

BLAST of CmoCh06G008440.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17070.1	4.4e-61	68.63	peptidyl-prolyl cis-trans isomerases	[more]

BLAST of CmoCh06G008440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459010\|ref\|XP_004147239.1\|	9.5e-82	87.20	PREDICTED: uncharacterized protein LOC101206948 [Cucumis sativus]	[more]
gi\|659095795\|ref\|XP_008448772.1\|	1.4e-80	86.59	PREDICTED: uncharacterized protein LOC103490837 [Cucumis melo]	[more]
gi\|720059229\|ref\|XP_010274510.1\|	6.2e-73	78.05	PREDICTED: uncharacterized protein LOC104609823 [Nelumbo nucifera]	[more]
gi\|720044253\|ref\|XP_010269830.1\|	2.0e-71	69.47	PREDICTED: uncharacterized protein LOC104606378 [Nelumbo nucifera]	[more]
gi\|743944292\|ref\|XP_011016665.1\|	2.6e-71	78.75	PREDICTED: uncharacterized protein LOC105120171 isoform X2 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002130	Cyclophilin-type_PPIase_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0000413	protein peptidyl-prolyl isomerization
GO:0006457	protein folding

Vocabulary: **Molecular Function**
Term	Definition
GO:0003755	peptidyl-prolyl cis-trans isomerase activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G008440	CmoCh06G008440	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G008440.1	CmoCh06G008440.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G008440.1.three_prime_UTR.1	CmoCh06G008440.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G008440.1.CDS.6	CmoCh06G008440.1.CDS.6	CDS
CmoCh06G008440.1.CDS.5	CmoCh06G008440.1.CDS.5	CDS
CmoCh06G008440.1.CDS.4	CmoCh06G008440.1.CDS.4	CDS
CmoCh06G008440.1.CDS.3	CmoCh06G008440.1.CDS.3	CDS
CmoCh06G008440.1.CDS.2	CmoCh06G008440.1.CDS.2	CDS
CmoCh06G008440.1.CDS.1	CmoCh06G008440.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G008440.1.five_prime_UTR.1	CmoCh06G008440.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G008440.1.exon.6	CmoCh06G008440.1.exon.6	exon
CmoCh06G008440.1.exon.5	CmoCh06G008440.1.exon.5	exon
CmoCh06G008440.1.exon.4	CmoCh06G008440.1.exon.4	exon
CmoCh06G008440.1.exon.3	CmoCh06G008440.1.exon.3	exon
CmoCh06G008440.1.exon.2	CmoCh06G008440.1.exon.2	exon
CmoCh06G008440.1.exon.1	CmoCh06G008440.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	PFAM	PF00160	Pro_isomerase	coord: 264..397 score: 3.
None	No IPR available	PANTHER	PTHR33344	FAMILY NOT NAMED	coord: 201..377 score: 1.4E-90coord: 2..135 score: 1.4
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..26 score: