CmoCh05G008690.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGGCCACAAAGTGTGTGTGTTTTTCCATAAGGAAATTAAAGTTTATCCAAAGCCATGCCTGCCTTCGCCAACGCCACCACGCTCTTCTCCTCTCGCATTCCCACTCCCCACAGATGCCACCGCCATCCCTTCCCCATCATCTCCGCCTCCCTTTCCATCCACCGCCGCCACATCGCGACCGCCCTCGCACTGGTGGTCGGGCTGCAGGCTGCAGCACCTCCCGCGCTGGCCCAGACCTGGGGCACCCACTCATTCATTAAGGAGAGATACTTCGAGCCGGGGCTGTCGGGGGAGGAGGCAGTGGCAAGGATAAGGCAGACGGCGGAGGGACTCCACAGCATCCGCGACATGCTGGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTCAAGTCGGCTTATCTCTCCCAAGACTTGAAAACTGCCATGTCCGTTTTGCCCCAAGCTCGCCAAAATGAGTATGTTAAGACTGCTAATGAGTTGGTCGATAACATGGCCGAGGTATGTGCTTTAATTACCATTTGATTTTATTTGATTTGAATCCCATCTCAAAATTTTGAATTTTTTTTTTTTTTTTTTTTGACAAATTATGCATTGGAATTTGTGAGATAACGTAGGAATTTAGAGGGTAGTTTAGTAGGATGTTGTAGTTTGTAGTTTGTTGGATGAAAGTTGCACGTCCACTCATTTAGTAAATAATCATGGGTTTATAATAAGAAACACTATATCCATTGGGTATGAGACCTTTTGAAAAACTCAAAGCAAAGTCACGATCGCTTATGCCCAAAGTGGACAATACCATACATTGAAGGGTCGTGTTCATCTAACATAGTTTATATAAATTAAAGAATAATTTGGTTTGTGTTTCAGTTGGATTACTACGTTCGCACACCCAAGGTGTATGAGTCGTATTTGTATTACGAAAAGACACTCAAATCCATGGATGATCTGGTGGCCATACTAGCATAGCCTCAGTTATTAGCACTTAGGATTCATCAAAGGGAGGCCTCATCTTCCATAAATTACTGTACATTTGGATGTTAACAGTCTTATTACAAATACATATGTAAAATTTGTTTATTGGACAGTAATAATATGCCTAAAATCTTTTAATCTTATCATTTGTTTAAAAAAGTACTTAGGTTTAATATATATATATATATATATATATATGAAAAAAAT AGGCCACAAAGTGTGTGTGTTTTTCCATAAGGAAATTAAAGTTTATCCAAAGCCATGCCTGCCTTCGCCAACGCCACCACGCTCTTCTCCTCTCGCATTCCCACTCCCCACAGATGCCACCGCCATCCCTTCCCCATCATCTCCGCCTCCCTTTCCATCCACCGCCGCCACATCGCGACCGCCCTCGCACTGGTGGTCGGGCTGCAGGCTGCAGCACCTCCCGCGCTGGCCCAGACCTGGGGCACCCACTCATTCATTAAGGAGAGATACTTCGAGCCGGGGCTGTCGGGGGAGGAGGCAGTGGCAAGGATAAGGCAGACGGCGGAGGGACTCCACAGCATCCGCGACATGCTGGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTCAAGTCGGCTTATCTCTCCCAAGACTTGAAAACTGCCATGTCCGTTTTGCCCCAAGCTCGCCAAAATGAGTATGTTAAGACTGCTAATGAGTTGGTCGATAACATGGCCGAGTTGGATTACTACGTTCGCACACCCAAGGTGTATGAGTCGTATTTGTATTACGAAAAGACACTCAAATCCATGGATGATCTGGTGGCCATACTAGCATAGCCTCAGTTATTAGCACTTAGGATTCATCAAAGGGAGGCCTCATCTTCCATAAATTACTGTACATTTGGATGTTAACAGTCTTATTACAAATACATATGTAAAATTTGTTTATTGGACAGTAATAATATGCCTAAAATCTTTTAATCTTATCATTTGTTTAAAAAAGTACTTAGGTTTAATATATATATATATATATATATATATGAAAAAAAT ATGCCTGCCTTCGCCAACGCCACCACGCTCTTCTCCTCTCGCATTCCCACTCCCCACAGATGCCACCGCCATCCCTTCCCCATCATCTCCGCCTCCCTTTCCATCCACCGCCGCCACATCGCGACCGCCCTCGCACTGGTGGTCGGGCTGCAGGCTGCAGCACCTCCCGCGCTGGCCCAGACCTGGGGCACCCACTCATTCATTAAGGAGAGATACTTCGAGCCGGGGCTGTCGGGGGAGGAGGCAGTGGCAAGGATAAGGCAGACGGCGGAGGGACTCCACAGCATCCGCGACATGCTGGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTCAAGTCGGCTTATCTCTCCCAAGACTTGAAAACTGCCATGTCCGTTTTGCCCCAAGCTCGCCAAAATGAGTATGTTAAGACTGCTAATGAGTTGGTCGATAACATGGCCGAGTTGGATTACTACGTTCGCACACCCAAGGTGTATGAGTCGTATTTGTATTACGAAAAGACACTCAAATCCATGGATGATCTGGTGGCCATACTAGCATAG
BLAST of CmoCh05G008690.1 vs. Swiss-Prot
Match: PNSL2_ARATH (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana GN=PNSL2 PE=1 SV=1) HSP 1 Score: 196.1 bits (497), Expect = 3.5e-49 Identity = 103/171 (60.23%), Postives = 127/171 (74.27%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 7.8e-09 Identity = 31/115 (26.96%), Postives = 66/115 (57.39%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2) HSP 1 Score: 60.8 bits (146), Expect = 1.7e-08 Identity = 44/177 (24.86%), Postives = 86/177 (48.59%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3) HSP 1 Score: 60.5 bits (145), Expect = 2.3e-08 Identity = 30/115 (26.09%), Postives = 65/115 (56.52%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 2.3e-08 Identity = 30/115 (26.09%), Postives = 65/115 (56.52%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. TrEMBL
Match: A0A0A0L3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1) HSP 1 Score: 298.1 bits (762), Expect = 7.2e-78 Identity = 157/187 (83.96%), Postives = 169/187 (90.37%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. TrEMBL
Match: A0A0D2SAU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G087300 PE=4 SV=1) HSP 1 Score: 232.3 bits (591), Expect = 4.9e-58 Identity = 126/198 (63.64%), Postives = 149/198 (75.25%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. TrEMBL
Match: A0A0B0NLL7_GOSAR (Oxygen-evolving enhancer 3-2, chloroplastic-like protein OS=Gossypium arboreum GN=F383_08103 PE=4 SV=1) HSP 1 Score: 228.4 bits (581), Expect = 7.0e-57 Identity = 125/198 (63.13%), Postives = 147/198 (74.24%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. TrEMBL
Match: D7TN65_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=1) HSP 1 Score: 226.9 bits (577), Expect = 2.0e-56 Identity = 122/189 (64.55%), Postives = 142/189 (75.13%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. TrEMBL
Match: A0A061EB55_THECC (PsbQ-like 2 OS=Theobroma cacao GN=TCM_011674 PE=4 SV=1) HSP 1 Score: 223.8 bits (569), Expect = 1.7e-55 Identity = 122/201 (60.70%), Postives = 144/201 (71.64%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. TAIR10
Match: AT1G14150.1 (AT1G14150.1 PsbQ-like 2) HSP 1 Score: 196.1 bits (497), Expect = 2.0e-50 Identity = 103/171 (60.23%), Postives = 127/171 (74.27%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. TAIR10
Match: AT4G05180.1 (AT4G05180.1 photosystem II subunit Q-2) HSP 1 Score: 60.8 bits (146), Expect = 9.8e-10 Identity = 44/177 (24.86%), Postives = 86/177 (48.59%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. TAIR10
Match: AT4G21280.2 (AT4G21280.2 photosystem II subunit QA) HSP 1 Score: 60.5 bits (145), Expect = 1.3e-09 Identity = 30/115 (26.09%), Postives = 65/115 (56.52%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. TAIR10
Match: AT3G01440.1 (AT3G01440.1 PsbQ-like 1) HSP 1 Score: 49.3 bits (116), Expect = 3.0e-06 Identity = 30/121 (24.79%), Postives = 59/121 (48.76%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. NCBI nr
Match: gi|449432058|ref|XP_004133817.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus]) HSP 1 Score: 298.1 bits (762), Expect = 1.0e-77 Identity = 157/187 (83.96%), Postives = 169/187 (90.37%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. NCBI nr
Match: gi|659075001|ref|XP_008437911.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo]) HSP 1 Score: 295.8 bits (756), Expect = 5.1e-77 Identity = 153/181 (84.53%), Postives = 167/181 (92.27%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. NCBI nr
Match: gi|823265558|ref|XP_012465506.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Gossypium raimondii]) HSP 1 Score: 232.3 bits (591), Expect = 7.0e-58 Identity = 126/198 (63.64%), Postives = 149/198 (75.25%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. NCBI nr
Match: gi|747049862|ref|XP_011070986.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Sesamum indicum]) HSP 1 Score: 228.8 bits (582), Expect = 7.7e-57 Identity = 124/194 (63.92%), Postives = 146/194 (75.26%), Query Frame = 1
BLAST of CmoCh05G008690.1 vs. NCBI nr
Match: gi|728834109|gb|KHG13552.1| (Oxygen-evolving enhancer 3-2, chloroplastic -like protein [Gossypium arboreum]) HSP 1 Score: 228.4 bits (581), Expect = 1.0e-56 Identity = 125/198 (63.13%), Postives = 147/198 (74.24%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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