CmoCh05G008550.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCATCTATGGTATGTTTGTTATAATAGTGTAGTAGTTGATTGAATACCTGAACTTAGATGGATATGTATGTTTGGGGTTGTTGTTGGAGATAAAAGAGTTGATTTTGGGTATGTATGTATGGATGGACAGCCGAAGCAAATCCATGAGATAAAAGACTTTCTTCTGACTGCAAGAAGGAAGGATGCGCGGTCAGTTAAAATAAAGAGGAGCAAAGATGTAGTGAAGTTCAAGGTTCGGTGCTCAAAGTACCTTTACACGCTCTGCGTCTTTGACTCTGAGAAGGCTGATAAATTGAAGCAGTCTCTTCCACCAGGTATTCATTCATTCTTTCTTTTAGGTTCTTTTCAAATATGTTATGTTGTTGAAGCCTTTTATTTAATTTTATACATATTTTTGCTTTAAACTGCTGTAGGTTTGAGTGTGCAAGATCTTTGAACAAGGTAGTGTGGGTGGTGGTGGGTGATCATTCTTTGAACAAAATCAATCAGGAGGCTGAAGAGAAAAAAAAAAACGTTTGGCAGTAGTCAGTCTATTTCTTTTCAATCATTGAATGAATGAATGTCTTGATTTTTATAGGGACTGCTGGTGTTCTTGGCATTAATAGGACTTACAGCGCTTCTTTTTTTCTATGAACCTTTTCAAATTTTCAACCGTCTGAGATTGGTACGTCGTTGATTCCATTCCAAACTTTAATTATTCATTAGCCCTCTTTTTTGGCCCCTTCTCTTCAAGCAAAAATGTTATTAAGGTGTTCCTTCTCTGTTTGATATTTAGACAACCAAACATCATTTTATCTGTTCATTCAAAAAGGTTAACTCTTCACATGTAACAAAAGAAAAGCAAACATAAAGAGTCAGGAAAAGTAATTCATCCAATTCCTACTCGTATGTGAACAAGCTAGAATTTATATACATACAAAGAGGAAAGTAAAATATTCAAAGAGCAAATAAACCTGAATATTATCTGTTAGCTGCAGGTATGAAGTCTGCACTCTTCGGCCCCGCAAAAGCTGAAAATTTACAGTAACATCCTGGTAAAGGTATTCCCACAACTTTTAACAGATTACCAAGTTCTAGCTGCTATGAAGCGAGAAGCATAAAACAGCCCATAAAATTGTTATTGAGTGCAATGAGTTCTTTATTCAGTTAAGCAATAATGTAGAAAACCCAGTACCAGTTAGCGCTACTGAACCAAATAGTTTGAAATTATTTGATGCTGATATGATGCTGCACTTCTTTTTTTATCCTGCAATAGCCCTTCTGTTGAAATTATTTTGCACTCTTGGTAAACGTGAGTTGACAACATAATTCTTGCTGTAAGTTCAAGTTTGGGAATTTTCTCGGTGCGTTCTGTTTTTTTGTTCTCAATAAAAATGGGAACGTTTTGGTTTCTCATGCAGTTGAAATGTAACTAAGATATGACAAATGTCATCAATATATCCTCAATGTTCTTCACGGCTTCAATCTCTGGTATTGAGTTTGGAAAGAAAAGAAAAACTACGAAAATAACAGAAATTTCATAGAATATGCC ATGCCATCTATGCCGAAGCAAATCCATGAGATAAAAGACTTTCTTCTGACTGCAAGAAGGAAGGATGCGCGGTCAGTTAAAATAAAGAGGAGCAAAGATGTAGTGAAGTTCAAGGTTCGGTGCTCAAAGTACCTTTACACGCTCTGCGTCTTTGACTCTGAGAAGGCTGATAAATTGAAGCAGTCTCTTCCACCAGGTATGAAGTCTGCACTCTTCGGCCCCGCAAAAGCTGAAAATTTACAGTAACATCCTGGTAAAGGTATTCCCACAACTTTTAACAGATTACCAAGTTCTAGCTGCTATGAAGCGAGAAGCATAAAACAGCCCATAAAATTGTTATTGAGTGCAATGAGTTCTTTATTCAGTTAAGCAATAATGTAGAAAACCCAGTACCAGTTAGCGCTACTGAACCAAATAGTTTGAAATTATTTGATGCTGATATGATGCTGCACTTCTTTTTTTATCCTGCAATAGCCCTTCTGTTGAAATTATTTTGCACTCTTGGTAAACGTGAGTTGACAACATAATTCTTGCTGTAAGTTCAAGTTTGGGAATTTTCTCGGTGCGTTCTGTTTTTTTGTTCTCAATAAAAATGGGAACGTTTTGGTTTCTCATGCAGTTGAAATGTAACTAAGATATGACAAATGTCATCAATATATCCTCAATGTTCTTCACGGCTTCAATCTCTGGTATTGAGTTTGGAAAGAAAAGAAAAACTACGAAAATAACAGAAATTTCATAGAATATGCC ATGCCATCTATGCCGAAGCAAATCCATGAGATAAAAGACTTTCTTCTGACTGCAAGAAGGAAGGATGCGCGGTCAGTTAAAATAAAGAGGAGCAAAGATGTAGTGAAGTTCAAGGTTCGGTGCTCAAAGTACCTTTACACGCTCTGCGTCTTTGACTCTGAGAAGGCTGATAAATTGAAGCAGTCTCTTCCACCAGGTATGAAGTCTGCACTCTTCGGCCCCGCAAAAGCTGAAAATTTACAGTAA
BLAST of CmoCh05G008550.1 vs. Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 4.3e-28 Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 1
BLAST of CmoCh05G008550.1 vs. Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 5.3e-26 Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 1
BLAST of CmoCh05G008550.1 vs. Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 3.8e-24 Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 1
BLAST of CmoCh05G008550.1 vs. Swiss-Prot
Match: RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2) HSP 1 Score: 104.4 bits (259), Expect = 6.1e-22 Identity = 50/64 (78.12%), Postives = 59/64 (92.19%), Query Frame = 1
BLAST of CmoCh05G008550.1 vs. Swiss-Prot
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=1 SV=3) HSP 1 Score: 104.4 bits (259), Expect = 6.1e-22 Identity = 50/64 (78.12%), Postives = 59/64 (92.19%), Query Frame = 1
BLAST of CmoCh05G008550.1 vs. TrEMBL
Match: A0A068U8M1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018662001 PE=3 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 6.7e-28 Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1
BLAST of CmoCh05G008550.1 vs. TrEMBL
Match: A0A078I3U9_BRANA (BnaC03g24210D protein OS=Brassica napus GN=BnaC03g24210D PE=3 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 2.0e-27 Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 1
BLAST of CmoCh05G008550.1 vs. TrEMBL
Match: A0A068VBT7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007069001 PE=3 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 3.3e-27 Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1
BLAST of CmoCh05G008550.1 vs. TrEMBL
Match: A0A078FY31_BRANA (BnaC04g02930D protein OS=Brassica napus GN=BnaC04g02930D PE=3 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 4.4e-27 Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 1
BLAST of CmoCh05G008550.1 vs. TrEMBL
Match: R0HM91_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10018301mg PE=3 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 4.4e-27 Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1
BLAST of CmoCh05G008550.1 vs. TAIR10
Match: AT2G43460.1 (AT2G43460.1 Ribosomal L38e protein family) HSP 1 Score: 124.8 bits (312), Expect = 2.4e-29 Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 1
BLAST of CmoCh05G008550.1 vs. TAIR10
Match: AT3G59540.1 (AT3G59540.1 Ribosomal L38e protein family) HSP 1 Score: 124.8 bits (312), Expect = 2.4e-29 Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 1
BLAST of CmoCh05G008550.1 vs. NCBI nr
Match: gi|661891717|emb|CDP04642.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 131.0 bits (328), Expect = 9.7e-28 Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1
BLAST of CmoCh05G008550.1 vs. NCBI nr
Match: gi|674888423|emb|CDY44229.1| (BnaC03g24210D [Brassica napus]) HSP 1 Score: 129.4 bits (324), Expect = 2.8e-27 Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 1
BLAST of CmoCh05G008550.1 vs. NCBI nr
Match: gi|661878012|emb|CDP18171.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 128.6 bits (322), Expect = 4.8e-27 Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1
BLAST of CmoCh05G008550.1 vs. NCBI nr
Match: gi|565468464|ref|XP_006292105.1| (hypothetical protein CARUB_v10018301mg, partial [Capsella rubella]) HSP 1 Score: 128.3 bits (321), Expect = 6.3e-27 Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1
BLAST of CmoCh05G008550.1 vs. NCBI nr
Match: gi|674915308|emb|CDY17926.1| (BnaC04g02930D [Brassica napus]) HSP 1 Score: 128.3 bits (321), Expect = 6.3e-27 Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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