CmoCh05G008550 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G008550
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S ribosomal protein L38
Location	Cmo_Chr05 : 5480413 .. 5481946 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATCTATGGTATGTTTGTTATAATAGTGTAGTAGTTGATTGAATACCTGAACTTAGATGGATATGTATGTTTGGGGTTGTTGTTGGAGATAAAAGAGTTGATTTTGGGTATGTATGTATGGATGGACAGCCGAAGCAAATCCATGAGATAAAAGACTTTCTTCTGACTGCAAGAAGGAAGGATGCGCGGTCAGTTAAAATAAAGAGGAGCAAAGATGTAGTGAAGTTCAAGGTTCGGTGCTCAAAGTACCTTTACACGCTCTGCGTCTTTGACTCTGAGAAGGCTGATAAATTGAAGCAGTCTCTTCCACCAGGTATTCATTCATTCTTTCTTTTAGGTTCTTTTCAAATATGTTATGTTGTTGAAGCCTTTTATTTAATTTTATACATATTTTTGCTTTAAACTGCTGTAGGTTTGAGTGTGCAAGATCTTTGAACAAGGTAGTGTGGGTGGTGGTGGGTGATCATTCTTTGAACAAAATCAATCAGGAGGCTGAAGAGAAAAAAAAAAACGTTTGGCAGTAGTCAGTCTATTTCTTTTCAATCATTGAATGAATGAATGTCTTGATTTTTATAGGGACTGCTGGTGTTCTTGGCATTAATAGGACTTACAGCGCTTCTTTTTTTCTATGAACCTTTTCAAATTTTCAACCGTCTGAGATTGGTACGTCGTTGATTCCATTCCAAACTTTAATTATTCATTAGCCCTCTTTTTTGGCCCCTTCTCTTCAAGCAAAAATGTTATTAAGGTGTTCCTTCTCTGTTTGATATTTAGACAACCAAACATCATTTTATCTGTTCATTCAAAAAGGTTAACTCTTCACATGTAACAAAAGAAAAGCAAACATAAAGAGTCAGGAAAAGTAATTCATCCAATTCCTACTCGTATGTGAACAAGCTAGAATTTATATACATACAAAGAGGAAAGTAAAATATTCAAAGAGCAAATAAACCTGAATATTATCTGTTAGCTGCAGGTATGAAGTCTGCACTCTTCGGCCCCGCAAAAGCTGAAAATTTACAGTAACATCCTGGTAAAGGTATTCCCACAACTTTTAACAGATTACCAAGTTCTAGCTGCTATGAAGCGAGAAGCATAAAACAGCCCATAAAATTGTTATTGAGTGCAATGAGTTCTTTATTCAGTTAAGCAATAATGTAGAAAACCCAGTACCAGTTAGCGCTACTGAACCAAATAGTTTGAAATTATTTGATGCTGATATGATGCTGCACTTCTTTTTTTATCCTGCAATAGCCCTTCTGTTGAAATTATTTTGCACTCTTGGTAAACGTGAGTTGACAACATAATTCTTGCTGTAAGTTCAAGTTTGGGAATTTTCTCGGTGCGTTCTGTTTTTTTGTTCTCAATAAAAATGGGAACGTTTTGGTTTCTCATGCAGTTGAAATGTAACTAAGATATGACAAATGTCATCAATATATCCTCAATGTTCTTCACGGCTTCAATCTCTGGTATTGAGTTTGGAAAGAAAAGAAAAACTACGAAAATAACAGAAATTTCATAGAATATGCC

mRNA sequence

ATGCCATCTATGCCGAAGCAAATCCATGAGATAAAAGACTTTCTTCTGACTGCAAGAAGGAAGGATGCGCGGTCAGTTAAAATAAAGAGGAGCAAAGATGTAGTGAAGTTCAAGGTTCGGTGCTCAAAGTACCTTTACACGCTCTGCGTCTTTGACTCTGAGAAGGCTGATAAATTGAAGCAGTCTCTTCCACCAGGTATGAAGTCTGCACTCTTCGGCCCCGCAAAAGCTGAAAATTTACAGTAACATCCTGGTAAAGGTATTCCCACAACTTTTAACAGATTACCAAGTTCTAGCTGCTATGAAGCGAGAAGCATAAAACAGCCCATAAAATTGTTATTGAGTGCAATGAGTTCTTTATTCAGTTAAGCAATAATGTAGAAAACCCAGTACCAGTTAGCGCTACTGAACCAAATAGTTTGAAATTATTTGATGCTGATATGATGCTGCACTTCTTTTTTTATCCTGCAATAGCCCTTCTGTTGAAATTATTTTGCACTCTTGGTAAACGTGAGTTGACAACATAATTCTTGCTGTAAGTTCAAGTTTGGGAATTTTCTCGGTGCGTTCTGTTTTTTTGTTCTCAATAAAAATGGGAACGTTTTGGTTTCTCATGCAGTTGAAATGTAACTAAGATATGACAAATGTCATCAATATATCCTCAATGTTCTTCACGGCTTCAATCTCTGGTATTGAGTTTGGAAAGAAAAGAAAAACTACGAAAATAACAGAAATTTCATAGAATATGCC

Coding sequence (CDS)

ATGCCATCTATGCCGAAGCAAATCCATGAGATAAAAGACTTTCTTCTGACTGCAAGAAGGAAGGATGCGCGGTCAGTTAAAATAAAGAGGAGCAAAGATGTAGTGAAGTTCAAGGTTCGGTGCTCAAAGTACCTTTACACGCTCTGCGTCTTTGACTCTGAGAAGGCTGATAAATTGAAGCAGTCTCTTCCACCAGGTATGAAGTCTGCACTCTTCGGCCCCGCAAAAGCTGAAAATTTACAGTAA

Homology

[Close]

BLAST of CmoCh05G008550 vs. Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.3e-28
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 4  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 64 PPGM 68
          PPG+
Sbjct: 61 PPGL 64

[Close]

BLAST of CmoCh05G008550 vs. Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.3e-26
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 1


Query: 4  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63
          MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 64 PPGM 68
          PPG+
Sbjct: 61 PPGL 64

[Close]

BLAST of CmoCh05G008550 vs. Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.8e-24
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 4  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63
          MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 64 PPGM 68
          PPG+
Sbjct: 61 PPGL 64

[Close]

BLAST of CmoCh05G008550 vs. Swiss-Prot
Match: RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 6.1e-22
Identity = 50/64 (78.12%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 4  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 64 PPGM 68
          PPG+
Sbjct: 61 PPGL 64

[Close]

BLAST of CmoCh05G008550 vs. Swiss-Prot
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=1 SV=3)

HSP 1 Score: 104.4 bits (259), Expect = 6.1e-22
Identity = 50/64 (78.12%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 4  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 64 PPGM 68
          PPG+
Sbjct: 61 PPGL 64

[Close]

BLAST of CmoCh05G008550 vs. TrEMBL
Match: A0A068U8M1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018662001 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 6.7e-28
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1


Query: 2  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 61
          P MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ
Sbjct: 34 PKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 93

Query: 62 SLPPGM 68
          SLPPG+
Sbjct: 94 SLPPGL 99

[Close]

BLAST of CmoCh05G008550 vs. TrEMBL
Match: A0A078I3U9_BRANA (BnaC03g24210D protein OS=Brassica napus GN=BnaC03g24210D PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.0e-27
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 1


Query: 2  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 61
          P+MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCSKYLYTLCVFD EKADKLKQ
Sbjct: 16 PTMPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSKYLYTLCVFDQEKADKLKQ 75

Query: 62 SLPPGM 68
          SLPPG+
Sbjct: 76 SLPPGL 81

[Close]

BLAST of CmoCh05G008550 vs. TrEMBL
Match: A0A068VBT7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007069001 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.3e-27
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 3  SMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 62
          +MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS
Sbjct: 35 NMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 94

Query: 63 LPPGM 68
          LPPG+
Sbjct: 95 LPPGL 99

[Close]

BLAST of CmoCh05G008550 vs. TrEMBL
Match: A0A078FY31_BRANA (BnaC04g02930D protein OS=Brassica napus GN=BnaC04g02930D PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.4e-27
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 1


Query: 2  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 61
          P+MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCSKYLYTLCVFD EKADKLKQ
Sbjct: 12 PTMPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSKYLYTLCVFDQEKADKLKQ 71

Query: 62 SLPPG 67
          SLPPG
Sbjct: 72 SLPPG 76

[Close]

BLAST of CmoCh05G008550 vs. TrEMBL
Match: R0HM91_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10018301mg PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.4e-27
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1


Query: 2  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 61
          P+MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQ
Sbjct: 30 PTMPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQ 89

Query: 62 SLPPGM 68
          SLPPG+
Sbjct: 90 SLPPGL 95

[Close]

BLAST of CmoCh05G008550 vs. TAIR10
Match: AT2G43460.1 (AT2G43460.1 Ribosomal L38e protein family)

HSP 1 Score: 124.8 bits (312), Expect = 2.4e-29
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 4  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 64 PPGM 68
          PPG+
Sbjct: 61 PPGL 64

[Close]

BLAST of CmoCh05G008550 vs. TAIR10
Match: AT3G59540.1 (AT3G59540.1 Ribosomal L38e protein family)

HSP 1 Score: 124.8 bits (312), Expect = 2.4e-29
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 4  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 64 PPGM 68
          PPG+
Sbjct: 61 PPGL 64

[Close]

BLAST of CmoCh05G008550 vs. NCBI nr
Match: gi|661891717|emb|CDP04642.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 131.0 bits (328), Expect = 9.7e-28
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1


Query: 2  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 61
          P MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ
Sbjct: 34 PKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 93

Query: 62 SLPPGM 68
          SLPPG+
Sbjct: 94 SLPPGL 99

[Close]

BLAST of CmoCh05G008550 vs. NCBI nr
Match: gi|674888423|emb|CDY44229.1| (BnaC03g24210D [Brassica napus])

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-27
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 1


Query: 2  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 61
          P+MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCSKYLYTLCVFD EKADKLKQ
Sbjct: 16 PTMPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSKYLYTLCVFDQEKADKLKQ 75

Query: 62 SLPPGM 68
          SLPPG+
Sbjct: 76 SLPPGL 81

[Close]

BLAST of CmoCh05G008550 vs. NCBI nr
Match: gi|661878012|emb|CDP18171.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 128.6 bits (322), Expect = 4.8e-27
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 3  SMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 62
          +MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS
Sbjct: 35 NMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 94

Query: 63 LPPGM 68
          LPPG+
Sbjct: 95 LPPGL 99

[Close]

BLAST of CmoCh05G008550 vs. NCBI nr
Match: gi|565468464|ref|XP_006292105.1| (hypothetical protein CARUB_v10018301mg, partial [Capsella rubella])

HSP 1 Score: 128.3 bits (321), Expect = 6.3e-27
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1


Query: 2  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 61
          P+MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQ
Sbjct: 30 PTMPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQ 89

Query: 62 SLPPGM 68
          SLPPG+
Sbjct: 90 SLPPGL 95

[Close]

BLAST of CmoCh05G008550 vs. NCBI nr
Match: gi|674915308|emb|CDY17926.1| (BnaC04g02930D [Brassica napus])

HSP 1 Score: 128.3 bits (321), Expect = 6.3e-27
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 1


Query: 2  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 61
          P+MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCSKYLYTLCVFD EKADKLKQ
Sbjct: 12 PTMPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSKYLYTLCVFDQEKADKLKQ 71

Query: 62 SLPPG 67
          SLPPG
Sbjct: 72 SLPPG 76

The following BLAST results are available for this feature:

BLAST of CmoCh05G008550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL38_ARATH	4.3e-28	93.75	60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1	[more]
RL38_SOLLC	5.3e-26	89.06	60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1	[more]
RL38_BRABE	3.8e-24	84.38	60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1	[more]
RL38_RAT	6.1e-22	78.13	60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2	[more]
RL38_MOUSE	6.1e-22	78.13	60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=1 SV=3	[more]

BLAST of CmoCh05G008550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A068U8M1_COFCA	6.7e-28	96.97	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018662001 PE=3 SV=1	[more]
A0A078I3U9_BRANA	2.0e-27	93.94	BnaC03g24210D protein OS=Brassica napus GN=BnaC03g24210D PE=3 SV=1	[more]
A0A068VBT7_COFCA	3.3e-27	96.92	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007069001 PE=3 SV=1	[more]
A0A078FY31_BRANA	4.4e-27	95.38	BnaC04g02930D protein OS=Brassica napus GN=BnaC04g02930D PE=3 SV=1	[more]
R0HM91_9BRAS	4.4e-27	92.42	Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10018301mg PE=3...	[more]

BLAST of CmoCh05G008550 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43460.1	2.4e-29	93.75	Ribosomal L38e protein family	[more]
AT3G59540.1	2.4e-29	93.75	Ribosomal L38e protein family	[more]

BLAST of CmoCh05G008550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|661891717\|emb\|CDP04642.1\|	9.7e-28	96.97	unnamed protein product [Coffea canephora]	[more]
gi\|674888423\|emb\|CDY44229.1\|	2.8e-27	93.94	BnaC03g24210D [Brassica napus]	[more]
gi\|661878012\|emb\|CDP18171.1\|	4.8e-27	96.92	unnamed protein product [Coffea canephora]	[more]
gi\|565468464\|ref\|XP_006292105.1\|	6.3e-27	92.42	hypothetical protein CARUB_v10018301mg, partial [Capsella rubella]	[more]
gi\|674915308\|emb\|CDY17926.1\|	6.3e-27	95.38	BnaC04g02930D [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002675	Ribosomal_L38e

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0022618	ribonucleoprotein complex assembly
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G008550.1	CmoCh05G008550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002675	Ribosomal protein L38e	PRODOM	PD010361		coord: 4..67 score: 1.0
IPR002675	Ribosomal protein L38e	PANTHER	PTHR10965	60S RIBOSOMAL PROTEIN L38	coord: 5..67 score: 7.7
IPR002675	Ribosomal protein L38e	PFAM	PF01781	Ribosomal_L38e	coord: 5..68 score: 1.9
None	No IPR available	PANTHER	PTHR10965:SF3	SUBFAMILY NOT NAMED	coord: 5..67 score: 7.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G008550	Cucsa.189420	Cucumber (Gy14) v1	cgycmoB0554
CmoCh05G008550	CmaCh01G004870	Cucurbita maxima (Rimu)	cmacmoB485
CmoCh05G008550	CmaCh05G008720	Cucurbita maxima (Rimu)	cmacmoB789
CmoCh05G008550	Csa2G098440	Cucumber (Chinese Long) v2	cmocuB779
CmoCh05G008550	MELO3C008569	Melon (DHL92) v3.5.1	cmomeB726
CmoCh05G008550	CSPI02G08120	Wild cucumber (PI 183967)	cmocpiB784
CmoCh05G008550	Cp4.1LG11g07080	Cucurbita pepo (Zucchini)	cmocpeB725
CmoCh05G008550	Cp4.1LG02g12360	Cucurbita pepo (Zucchini)	cmocpeB732
CmoCh05G008550	MELO3C008569.2	Melon (DHL92) v3.6.1	cmomedB823
CmoCh05G008550	CsaV3_2G010500	Cucumber (Chinese Long) v3	cmocucB0920
CmoCh05G008550	Bhi06G000795	Wax gourd	cmowgoB0930
CmoCh05G008550	CsGy2G008380	Cucumber (Gy14) v2	cgybcmoB240

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G008550	Bottle gourd (USVL1VR-Ls)	cmolsiB703
CmoCh05G008550	Silver-seed gourd	carcmoB0956
CmoCh05G008550	Watermelon (97103) v2	cmowmbB780
CmoCh05G008550	Watermelon (97103) v2	cmowmbB784
CmoCh05G008550	Cucurbita moschata (Rifu)	cmocmoB372
CmoCh05G008550	Watermelon (Charleston Gray)	cmowcgB696
CmoCh05G008550	Watermelon (Charleston Gray)	cmowcgB697
CmoCh05G008550	Watermelon (97103) v1	cmowmB762
CmoCh05G008550	Watermelon (97103) v1	cmowmB765