CsaV3_2G010500 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G010500
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	60S ribosomal protein L38
Location	chr2 : 7570147 .. 7570802 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAATCTACCTTTTGTTTCTCTTGTTGGACAGCCAAAGCAAATCCATGAGATCAAAGACTTTCTTCTCACTGCTAGAAGAAAGGATGCCCGCTCGGTCAAAATCAAGAGGAGCAAAGATGTAGTCAAGTTTAAGGTTCGCTGCTCCAAGTACCTTTACACGCTCTGCGTCTTTGACTCGGAGAAGGCTGACAAATTGAAGCAGTCTCTTCCCCCAGGTATTCTCTTAAGCTTTGTTTAATTTTTTCTTATGAAAAGAAGCTCTGTTAAATTTATGTTCAGGATTTGGCCTTGATTGGTTTCAAGAATCCATGTGTTTGTTATTTTTATCATGAATTTAAATTTATACGTTTTCTTGTTTAACTGCACACATGTTAAAGCGTTTTAATTCCTACATATTTTTGGTTTAAATTGTTGTAGGTTTGAGTGTGCAAGATCTTTGAAGAAGTAGTGAGCGAATTTTGGAGATTTATATGGAAAAACAAGGGCTGAAGGAAACATTTGCCAGTTATTTTTCTTTCTTATTTTCAATCATCTGCTGTGTTGAATGTTCGGATTTTTATAGGGACGGCTGTTCTTGTCACGAGTAGGAGTTGGACTGAACTTTTAGCGTTTCTTAAATTTTATGAACCCATCTCAGATTTTGAACTGTGA

mRNA sequence

ATGCTGAATCTACCTTTTGTTTCTCTTGTTGGACAGCCAAAGCAAATCCATGAGATCAAAGACTTTCTTCTCACTGCTAGAAGAAAGGATGCCCGCTCGGTCAAAATCAAGAGGAGCAAAGATGTAGTCAAGTTTAAGGTTCGCTGCTCCAAGTACCTTTACACGCTCTGCGTCTTTGACTCGGAGAAGGCTGACAAATTGAAGCAGTCTCTTCCCCCAGGGACGGCTGTTCTTGTCACGAGTAGGAGTTGGACTGAACTTTTAGCGTTTCTTAAATTTTATGAACCCATCTCAGATTTTGAACTGTGA

Coding sequence (CDS)

ATGCTGAATCTACCTTTTGTTTCTCTTGTTGGACAGCCAAAGCAAATCCATGAGATCAAAGACTTTCTTCTCACTGCTAGAAGAAAGGATGCCCGCTCGGTCAAAATCAAGAGGAGCAAAGATGTAGTCAAGTTTAAGGTTCGCTGCTCCAAGTACCTTTACACGCTCTGCGTCTTTGACTCGGAGAAGGCTGACAAATTGAAGCAGTCTCTTCCCCCAGGGACGGCTGTTCTTGTCACGAGTAGGAGTTGGACTGAACTTTTAGCGTTTCTTAAATTTTATGAACCCATCTCAGATTTTGAACTGTGA

Protein sequence

MLNLPFVSLVGQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTAVLVTSRSWTELLAFLKFYEPISDFEL

Homology

[Close]

BLAST of CsaV3_2G010500 vs. NCBI nr
Match: XP_022946384.1 (60S ribosomal protein L38 isoform X1 [Cucurbita moschata] >XP_022972863.1 60S ribosomal protein L38 isoform X1 [Cucurbita maxima] >XP_023545547.1 60S ribosomal protein L38 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545638.1 60S ribosomal protein L38 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.1 bits (331), Expect = 1.1e-27
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 11 GQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 70
          GQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS
Sbjct: 3  GQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 62

Query: 71 LPPGTAV 78
          LPPG +V
Sbjct: 63 LPPGLSV 69

[Close]

BLAST of CsaV3_2G010500 vs. NCBI nr
Match: RDX61312.1 (60S ribosomal protein L38, partial [Mucuna pruriens])

HSP 1 Score: 130.2 bits (326), Expect = 4.1e-27
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 12  QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 71
           QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 52  QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 111

Query: 72  PPGTAVL 79
           PPG  +L
Sbjct: 112 PPGRVIL 118

[Close]

BLAST of CsaV3_2G010500 vs. NCBI nr
Match: XP_020237024.1 (60S ribosomal protein L38-like [Cajanus cajan])

HSP 1 Score: 129.8 bits (325), Expect = 5.3e-27
Identity = 65/77 (84.42%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MLNLPFVSLVGQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD 60
          +L++  V LV  PKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFD
Sbjct: 19 LLSVTAVHLVTMPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFD 78

Query: 61 SEKADKLKQSLPPGTAV 78
           EKADKLKQSLPPG +V
Sbjct: 79 PEKADKLKQSLPPGLSV 95

[Close]

BLAST of CsaV3_2G010500 vs. NCBI nr
Match: PKI38043.1 (hypothetical protein CRG98_041573 [Punica granatum])

HSP 1 Score: 129.4 bits (324), Expect = 7.0e-27
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 12 QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 71
          QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 11 QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 70

Query: 72 PPGTAVL 79
          PPG+ +L
Sbjct: 71 PPGSFLL 77

[Close]

BLAST of CsaV3_2G010500 vs. NCBI nr
Match: EEF47361.1 (60S ribosomal protein L38, putative [Ricinus communis])

HSP 1 Score: 129.4 bits (324), Expect = 7.0e-27
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 12 QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 71
          QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 10 QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 69

Query: 72 PPGTAV 78
          PPG +V
Sbjct: 70 PPGLSV 75

[Close]

BLAST of CsaV3_2G010500 vs. TAIR10
Match: AT2G43460.1 (Ribosomal L38e protein family)

HSP 1 Score: 124.4 bits (311), Expect = 4.1e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 13 PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 72
          PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLP
Sbjct: 2  PKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLP 61

Query: 73 PGTAV 78
          PG +V
Sbjct: 62 PGLSV 66

[Close]

BLAST of CsaV3_2G010500 vs. TAIR10
Match: AT3G59540.1 (Ribosomal L38e protein family)

HSP 1 Score: 124.4 bits (311), Expect = 4.1e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 13 PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 72
          PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLP
Sbjct: 2  PKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLP 61

Query: 73 PGTAV 78
          PG +V
Sbjct: 62 PGLSV 66

[Close]

BLAST of CsaV3_2G010500 vs. Swiss-Prot
Match: sp|O22860|RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.3e-28
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 13 PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 72
          PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLP
Sbjct: 2  PKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLP 61

Query: 73 PGTAV 78
          PG +V
Sbjct: 62 PGLSV 66

[Close]

BLAST of CsaV3_2G010500 vs. Swiss-Prot
Match: sp|P46291|RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.0e-26
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 13 PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 72
          PKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLP
Sbjct: 2  PKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSLP 61

Query: 73 PGTAV 78
          PG +V
Sbjct: 62 PGLSV 66

[Close]

BLAST of CsaV3_2G010500 vs. Swiss-Prot
Match: sp|Q95V84|RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-24
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 13 PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 72
          PKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLP
Sbjct: 2  PKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSLP 61

Query: 73 PGTAV 78
          PG AV
Sbjct: 62 PGLAV 66

[Close]

BLAST of CsaV3_2G010500 vs. Swiss-Prot
Match: sp|Q32PB9|RL38_BOVIN (60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4)

HSP 1 Score: 105.1 bits (261), Expect = 4.6e-22
Identity = 51/65 (78.46%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 13 PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 72
          P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLP
Sbjct: 2  PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLP 61

Query: 73 PGTAV 78
          PG AV
Sbjct: 62 PGLAV 66

[Close]

BLAST of CsaV3_2G010500 vs. Swiss-Prot
Match: sp|P63173|RL38_HUMAN (60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 4.6e-22
Identity = 51/65 (78.46%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 13 PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 72
          P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLP
Sbjct: 2  PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLP 61

Query: 73 PGTAV 78
          PG AV
Sbjct: 62 PGLAV 66

[Close]

BLAST of CsaV3_2G010500 vs. TrEMBL
Match: tr|B9RM38|B9RM38_RICCO (60S ribosomal protein L38, putative OS=Ricinus communis OX=3988 GN=RCOM_1077580 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.6e-27
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 12 QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 71
          QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 10 QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 69

Query: 72 PPGTAV 78
          PPG +V
Sbjct: 70 PPGLSV 75

[Close]

BLAST of CsaV3_2G010500 vs. TrEMBL
Match: tr|A0A2I0I2J4|A0A2I0I2J4_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_041573 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.6e-27
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 12 QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 71
          QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 11 QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 70

Query: 72 PPGTAVL 79
          PPG+ +L
Sbjct: 71 PPGSFLL 77

[Close]

BLAST of CsaV3_2G010500 vs. TrEMBL
Match: tr|A0A2H5QP44|A0A2H5QP44_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_248250 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.0e-27
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 8  SLVGQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKL 67
          +L+  PKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFDSEKADKL
Sbjct: 27 ALIKMPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKL 86

Query: 68 KQSLPPGTAV 78
          KQSLPPG +V
Sbjct: 87 KQSLPPGLSV 96

[Close]

BLAST of CsaV3_2G010500 vs. TrEMBL
Match: tr|A0A068VBT7|A0A068VBT7_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00007069001 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.0e-27
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 8   SLVGQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKL 67
           S +  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKL
Sbjct: 32  SSLNMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKL 91

Query: 68  KQSLPPGTAV 78
           KQSLPPG +V
Sbjct: 92  KQSLPPGLSV 101

[Close]

BLAST of CsaV3_2G010500 vs. TrEMBL
Match: tr|A0A200Q3X3|A0A200Q3X3_9MAGN (Ribosomal protein L38e OS=Macleaya cordata OX=56857 GN=BVC80_8895g26 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.0e-26
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 12 QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 71
          +PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 15 EPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 74

Query: 72 PPGTAV 78
          PPG +V
Sbjct: 75 PPGLSV 80

The following BLAST results are available for this feature:

BLAST of CsaV3_2G010500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946384.1	1.1e-27	97.01	60S ribosomal protein L38 isoform X1 [Cucurbita moschata] >XP_022972863.1 60S ri...	[more]
RDX61312.1	4.1e-27	95.52	60S ribosomal protein L38, partial [Mucuna pruriens]	[more]
XP_020237024.1	5.3e-27	84.42	60S ribosomal protein L38-like [Cajanus cajan]	[more]
PKI38043.1	7.0e-27	95.52	hypothetical protein CRG98_041573 [Punica granatum]	[more]
EEF47361.1	7.0e-27	96.97	60S ribosomal protein L38, putative [Ricinus communis]	[more]

BLAST of CsaV3_2G010500 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43460.1	4.1e-29	92.31	Ribosomal L38e protein family	[more]
AT3G59540.1	4.1e-29	92.31	Ribosomal L38e protein family	[more]

BLAST of CsaV3_2G010500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22860\|RL38_ARATH	7.3e-28	92.31	60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1	[more]
sp\|P46291\|RL38_SOLLC	9.0e-26	87.69	60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1	[more]
sp\|Q95V84\|RL38_BRABE	2.9e-24	84.62	60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1	[more]
sp\|Q32PB9\|RL38_BOVIN	4.6e-22	78.46	60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4	[more]
sp\|P63173\|RL38_HUMAN	4.6e-22	78.46	60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2	[more]

BLAST of CsaV3_2G010500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|B9RM38\|B9RM38_RICCO	4.6e-27	96.97	60S ribosomal protein L38, putative OS=Ricinus communis OX=3988 GN=RCOM_1077580 ...	[more]
tr\|A0A2I0I2J4\|A0A2I0I2J4_PUNGR	4.6e-27	95.52	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_041573 PE=3 SV=1	[more]
tr\|A0A2H5QP44\|A0A2H5QP44_CITUN	6.0e-27	90.00	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_248250 PE=3 SV=1	[more]
tr\|A0A068VBT7\|A0A068VBT7_COFCA	6.0e-27	91.43	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00007069001 PE=3 ...	[more]
tr\|A0A200Q3X3\|A0A200Q3X3_9MAGN	1.0e-26	95.45	Ribosomal protein L38e OS=Macleaya cordata OX=56857 GN=BVC80_8895g26 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR038464	Ribosomal_L38e_sf
IPR002675	Ribosomal_L38e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0022618	ribonucleoprotein complex assembly
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G010500.1	CsaV3_2G010500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002675	Ribosomal protein L38e	PFAM	PF01781	Ribosomal_L38e	coord: 13..77 e-value: 2.4E-33 score: 113.9
IPR002675	Ribosomal protein L38e	PANTHER	PTHR10965	60S RIBOSOMAL PROTEIN L38	coord: 13..77
IPR002675	Ribosomal protein L38e	PRODOM	PD010361		coord: 13..77 e-value: 3.0E-29 score: 313.0
IPR038464	Ribosomal protein L38e superfamily	GENE3D	G3DSA:3.30.720.90		coord: 12..79 e-value: 2.5E-33 score: 116.0
None	No IPR available	PANTHER	PTHR10965:SF3	SUBFAMILY NOT NAMED	coord: 13..77

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G010500	CSPI02G08120	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G010500	Cucsa.189420	Cucumber (Gy14) v1	cgycucB304
CsaV3_2G010500	CmaCh01G004870	Cucurbita maxima (Rimu)	cmacucB0532
CsaV3_2G010500	CmaCh05G008720	Cucurbita maxima (Rimu)	cmacucB0936
CsaV3_2G010500	CmoCh05G008550	Cucurbita moschata (Rifu)	cmocucB0920
CsaV3_2G010500	Cp4.1LG11g07080	Cucurbita pepo (Zucchini)	cpecucB0118
CsaV3_2G010500	Cp4.1LG02g12360	Cucurbita pepo (Zucchini)	cpecucB0672
CsaV3_2G010500	CsGy2G008380	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G010500	MELO3C008569	Melon (DHL92) v3.5.1	cucmeB144
CsaV3_2G010500	MELO3C008569.2	Melon (DHL92) v3.6.1	cucmedB137
CsaV3_2G010500	Bhi06G000795	Wax gourd	cucwgoB147

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G010500	Silver-seed gourd	carcucB0737
CsaV3_2G010500	Cucurbita moschata (Rifu)	cmocucB0518
CsaV3_2G010500	Bottle gourd (USVL1VR-Ls)	cuclsiB108
CsaV3_2G010500	Watermelon (Charleston Gray)	cucwcgB115
CsaV3_2G010500	Watermelon (Charleston Gray)	cucwcgB119
CsaV3_2G010500	Watermelon (Charleston Gray)	cucwcgB123
CsaV3_2G010500	Watermelon (97103) v1	cucwmB169
CsaV3_2G010500	Watermelon (97103) v1	cucwmB177
CsaV3_2G010500	Watermelon (97103) v2	cucwmbB114
CsaV3_2G010500	Watermelon (97103) v2	cucwmbB110