CmoCh05G003930.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACTCATGGGAGTTCCTTGTGAAAACTACTCAAAGTTGGGTGAAAGAATCTCGAAATTACTATGCAGAACCCATAAACATGAGTGATGAAGATTTTCTTAAAATGATGCTTGTGGATAGTTGTTTCATAGTGGAGTTTTTGATACATCATGACCAATGCTTCTCAAATGTTTCCTCCGAGACCCAAAACAATTTAGATCTTTCCTTCCACCAAAGATATGATGAGATATATATTGATTTGGTTATGTTGGAAAATCTAAGTCTTTTTTTTTTTTTTTGTTCTTCAAGGTCTATTCCATCTTATACACAAAATAA ATGAACTCATGGGAGTTCCTTGTGAAAACTACTCAAAGTTGGGTGAAAGAATCTCGAAATTACTATGCAGAACCCATAAACATGAGTGATGAAGATTTTCTTAAAATGATGCTTGTGGATAGTTGTTTCATAGTGGAGTTTTTGATACATCATGACCAATGCTTCTCAAATGTTTCCTCCGAGACCCAAAACAATTTAGATCTTTCCTTCCACCAAAGATATGATGAGATATATATTGATTTGGTCTATTCCATCTTATACACAAAATAA ATGAACTCATGGGAGTTCCTTGTGAAAACTACTCAAAGTTGGGTGAAAGAATCTCGAAATTACTATGCAGAACCCATAAACATGAGTGATGAAGATTTTCTTAAAATGATGCTTGTGGATAGTTGTTTCATAGTGGAGTTTTTGATACATCATGACCAATGCTTCTCAAATGTTTCCTCCGAGACCCAAAACAATTTAGATCTTTCCTTCCACCAAAGATATGATGAGATATATATTGATTTGGTCTATTCCATCTTATACACAAAATAA
BLAST of CmoCh05G003930.1 vs. TrEMBL
Match: A0A0A0LLX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 4.8e-11 Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 1
BLAST of CmoCh05G003930.1 vs. TrEMBL
Match: A0A0A0LQ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 1.7e-08 Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1
BLAST of CmoCh05G003930.1 vs. TrEMBL
Match: A0A0A0L379_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104330 PE=4 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 6.5e-08 Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 1
BLAST of CmoCh05G003930.1 vs. TrEMBL
Match: A0A0A0K4A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G068570 PE=4 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 2.5e-07 Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1
BLAST of CmoCh05G003930.1 vs. TrEMBL
Match: A0A0A0LQ64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381630 PE=4 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 4.2e-07 Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 1
BLAST of CmoCh05G003930.1 vs. NCBI nr
Match: gi|659088838|ref|XP_008445188.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]) HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12 Identity = 43/85 (50.59%), Postives = 60/85 (70.59%), Query Frame = 1
BLAST of CmoCh05G003930.1 vs. NCBI nr
Match: gi|778674379|ref|XP_011650197.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus]) HSP 1 Score: 75.1 bits (183), Expect = 6.9e-11 Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 1
BLAST of CmoCh05G003930.1 vs. NCBI nr
Match: gi|659088834|ref|XP_008445186.1| (PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo]) HSP 1 Score: 72.4 bits (176), Expect = 4.5e-10 Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1
BLAST of CmoCh05G003930.1 vs. NCBI nr
Match: gi|700207813|gb|KGN62932.1| (hypothetical protein Csa_2G380610 [Cucumis sativus]) HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08 Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1
BLAST of CmoCh05G003930.1 vs. NCBI nr
Match: gi|778674382|ref|XP_004138863.2| (PREDICTED: UPF0481 protein At3g47200, partial [Cucumis sativus]) HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08 Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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