CmoCh05G003930 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G003930
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPlant protein of unknown function (DUF247)
LocationCmo_Chr05 : 1769751 .. 1770067 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCATGGGAGTTCCTTGTGAAAACTACTCAAAGTTGGGTGAAAGAATCTCGAAATTACTATGCAGAACCCATAAACATGAGTGATGAAGATTTTCTTAAAATGATGCTTGTGGATAGTTGTTTCATAGTGGAGTTTTTGATACATCATGACCAATGCTTCTCAAATGTTTCCTCCGAGACCCAAAACAATTTAGATCTTTCCTTCCACCAAAGATATGATGAGATATATATTGATTTGGTTATGTTGGAAAATCTAAGTCTTTTTTTTTTTTTTTGTTCTTCAAGGTCTATTCCATCTTATACACAAAATAA

mRNA sequence

ATGAACTCATGGGAGTTCCTTGTGAAAACTACTCAAAGTTGGGTGAAAGAATCTCGAAATTACTATGCAGAACCCATAAACATGAGTGATGAAGATTTTCTTAAAATGATGCTTGTGGATAGTTGTTTCATAGTGGAGTTTTTGATACATCATGACCAATGCTTCTCAAATGTTTCCTCCGAGACCCAAAACAATTTAGATCTTTCCTTCCACCAAAGATATGATGAGATATATATTGATTTGGTCTATTCCATCTTATACACAAAATAA

Coding sequence (CDS)

ATGAACTCATGGGAGTTCCTTGTGAAAACTACTCAAAGTTGGGTGAAAGAATCTCGAAATTACTATGCAGAACCCATAAACATGAGTGATGAAGATTTTCTTAAAATGATGCTTGTGGATAGTTGTTTCATAGTGGAGTTTTTGATACATCATGACCAATGCTTCTCAAATGTTTCCTCCGAGACCCAAAACAATTTAGATCTTTCCTTCCACCAAAGATATGATGAGATATATATTGATTTGGTCTATTCCATCTTATACACAAAATAA
Homology
[Close]
BLAST of CmoCh05G003930 vs. TrEMBL
Match: A0A0A0LLX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-11
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 1 

Query: 3   SWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI----HHDQCFSNV 62
           S E LVK  QSWVKE+RN YAE I+M+DEDF+KMML+D CFIVEF I     +     + 
Sbjct: 121 SLEDLVKKAQSWVKEARNCYAESIDMNDEDFIKMMLMDGCFIVEFFILDYEEYKMPDESF 180

Query: 63  SSETQNNLDLSFH-QRYDEIYIDLV 83
             + +NN+ +SF+ +R  +I  DL+
Sbjct: 181 FPKIENNVSMSFYKERIPDIDDDLI 205

[Close]
BLAST of CmoCh05G003930 vs. TrEMBL
Match: A0A0A0LQ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-08
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 3   SWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLIHHDQCFSNVSSET 62
           S + LV+ +  WVKE+ N YAEPI M DE+F+ MMLVD+CFIVEF + +   F       
Sbjct: 111 SSKVLVEKSHDWVKEAWNCYAEPIKMKDEEFIIMMLVDACFIVEFFLLYYGSFHEDGKLF 170

Query: 63  QNNLDLSFHQRYDEIYIDLV 83
              L L ++  + EI +DL+
Sbjct: 171 NAELSLFYYGVFYEILLDLI 190

[Close]
BLAST of CmoCh05G003930 vs. TrEMBL
Match: A0A0A0L379_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104330 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.5e-08
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 1 

Query: 7   LVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI-----HHDQCFSNVSSE 66
           LV+    WVKE+ N YA PINM ++DF+ MM+VD+CFIVEF I      H  C  ++   
Sbjct: 81  LVEKAHDWVKEALNCYATPINMEEKDFIIMMVVDACFIVEFFILKVDESHPICKFDL--- 140

Query: 67  TQNNLDLSFH 72
            Q N+D+SFH
Sbjct: 141 IQENVDISFH 147

[Close]
BLAST of CmoCh05G003930 vs. TrEMBL
Match: A0A0A0K4A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G068570 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.5e-07
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1 

Query: 3   SWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEF--LIHHDQCFSNVSS 62
           S E LVK  +SW++E+R+ Y +PI+M D +F+KMMLVD CFIVEF  L++     SN   
Sbjct: 104 SLEELVKIARSWIEEARSCYVDPIDMDDYEFVKMMLVDGCFIVEFFILVYSQYTTSNDHK 163

Query: 63  --ETQNNLDLSFHQR-YDEIYIDLV 83
             +   N  L F+Q    ++Y DL+
Sbjct: 164 FPQIDPNAGLLFYQGIIPDMYFDLL 188

[Close]
BLAST of CmoCh05G003930 vs. TrEMBL
Match: A0A0A0LQ64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381630 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.2e-07
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 1 

Query: 5   EFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVE-FLIHHDQCFS--NVSSE 64
           E LV+ TQ +V  +R+ YA+PI+M D +F+KMMLVD CFIVE F++ H+   S  +  S+
Sbjct: 92  ENLVEITQFYVGRARSCYADPIDMDDHEFVKMMLVDGCFIVELFILVHNITTSDDHKFSK 151

Query: 65  TQNNLDLSFHQR--YDEIYIDLV 83
              N+DL F+ +    ++Y DL+
Sbjct: 152 IDQNVDLLFYYQGIIPDVYFDLI 174

[Close]
BLAST of CmoCh05G003930 vs. NCBI nr
Match: gi|659088838|ref|XP_008445188.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12
Identity = 43/85 (50.59%), Postives = 60/85 (70.59%), Query Frame = 1 

Query: 3   SWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI----HHDQCFSNV 62
           S E LVK  QSWV+E+RN YAE INM+DEDF+KMMLVD CFIVEF I     +++   ++
Sbjct: 127 SVEDLVKRAQSWVEEARNCYAETINMNDEDFIKMMLVDGCFIVEFFILDFEEYNESHESL 186

Query: 63  SSETQNNLDLSFH-QRYDEIYIDLV 83
             + +NN+ +SF+ +R  +I  DL+
Sbjct: 187 FPQIENNVSMSFYKERIPDIDEDLI 211

[Close]
BLAST of CmoCh05G003930 vs. NCBI nr
Match: gi|778674379|ref|XP_011650197.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 6.9e-11
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 1 

Query: 3   SWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI----HHDQCFSNV 62
           S E LVK  QSWVKE+RN YAE I+M+DEDF+KMML+D CFIVEF I     +     + 
Sbjct: 121 SLEDLVKKAQSWVKEARNCYAESIDMNDEDFIKMMLMDGCFIVEFFILDYEEYKMPDESF 180

Query: 63  SSETQNNLDLSFH-QRYDEIYIDLV 83
             + +NN+ +SF+ +R  +I  DL+
Sbjct: 181 FPKIENNVSMSFYKERIPDIDDDLI 205

[Close]
BLAST of CmoCh05G003930 vs. NCBI nr
Match: gi|659088834|ref|XP_008445186.1| (PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-10
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1 

Query: 3   SWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEF--LIHHDQCFS--NV 62
           S E LVK  QSWV+E+R  YA+PI+M D +F+KMMLVD CFIVEF  L+H+    S  + 
Sbjct: 106 SLEELVKIAQSWVEEARRCYADPIDMDDHEFVKMMLVDGCFIVEFFILVHNQYTTSADHK 165

Query: 63  SSETQNNLDLSFHQR-YDEIYIDLV 83
             +   N+DL F+Q    ++Y DL+
Sbjct: 166 FPQIDPNVDLLFYQGIIPDVYFDLI 190

[Close]
BLAST of CmoCh05G003930 vs. NCBI nr
Match: gi|700207813|gb|KGN62932.1| (hypothetical protein Csa_2G380610 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 3   SWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLIHHDQCFSNVSSET 62
           S + LV+ +  WVKE+ N YAEPI M DE+F+ MMLVD+CFIVEF + +   F       
Sbjct: 111 SSKVLVEKSHDWVKEAWNCYAEPIKMKDEEFIIMMLVDACFIVEFFLLYYGSFHEDGKLF 170

Query: 63  QNNLDLSFHQRYDEIYIDLV 83
              L L ++  + EI +DL+
Sbjct: 171 NAELSLFYYGVFYEILLDLI 190

[Close]
BLAST of CmoCh05G003930 vs. NCBI nr
Match: gi|778674382|ref|XP_004138863.2| (PREDICTED: UPF0481 protein At3g47200, partial [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 3   SWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLIHHDQCFSNVSSET 62
           S + LV+ +  WVKE+ N YAEPI M DE+F+ MMLVD+CFIVEF + +   F       
Sbjct: 159 SSKVLVEKSHDWVKEAWNCYAEPIKMKDEEFIIMMLVDACFIVEFFLLYYGSFHEDGKLF 218

Query: 63  QNNLDLSFHQRYDEIYIDLV 83
              L L ++  + EI +DL+
Sbjct: 219 NAELSLFYYGVFYEILLDLI 238

The following BLAST results are available for this feature:
BLAST of CmoCh05G003930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh05G003930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLX1_CUCSA4.8e-1149.41Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1[more]
A0A0A0LQ57_CUCSA1.7e-0843.75Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1[more]
A0A0A0L379_CUCSA6.5e-0848.57Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104330 PE=4 SV=1[more]
A0A0A0K4A0_CUCSA2.5e-0743.53Uncharacterized protein OS=Cucumis sativus GN=Csa_7G068570 PE=4 SV=1[more]
A0A0A0LQ64_CUCSA4.2e-0743.37Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381630 PE=4 SV=1[more]
BLAST of CmoCh05G003930 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh05G003930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659088838|ref|XP_008445188.1|1.6e-1250.59PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo][more]
gi|778674379|ref|XP_011650197.1|6.9e-1149.41PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus][more]
gi|659088834|ref|XP_008445186.1|4.5e-1048.24PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo][more]
gi|700207813|gb|KGN62932.1|2.5e-0843.75hypothetical protein Csa_2G380610 [Cucumis sativus][more]
gi|778674382|ref|XP_004138863.2|2.5e-0843.75PREDICTED: UPF0481 protein At3g47200, partial [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004158DUF247_pln
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G003930.1CmoCh05G003930.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004158Protein of unknown function DUF247, plantPFAMPF03140DUF247coord: 7..67
score: 1.5
NoneNo IPR availablePANTHERPTHR31549FAMILY NOT NAMEDcoord: 7..49
score: 8.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh05G003930Cucurbita moschata (Rifu)cmocmoB156
CmoCh05G003930Cucumber (Gy14) v1cgycmoB0463
CmoCh05G003930Cucurbita maxima (Rimu)cmacmoB199
CmoCh05G003930Cucurbita maxima (Rimu)cmacmoB786
CmoCh05G003930Wild cucumber (PI 183967)cmocpiB788
CmoCh05G003930Cucumber (Chinese Long) v2cmocuB785
CmoCh05G003930Melon (DHL92) v3.5.1cmomeB716
CmoCh05G003930Watermelon (Charleston Gray)cmowcgB716
CmoCh05G003930Watermelon (97103) v1cmowmB748
CmoCh05G003930Cucurbita pepo (Zucchini)cmocpeB720
CmoCh05G003930Cucurbita pepo (Zucchini)cmocpeB750
CmoCh05G003930Bottle gourd (USVL1VR-Ls)cmolsiB730
CmoCh05G003930Bottle gourd (USVL1VR-Ls)cmolsiB731
CmoCh05G003930Cucumber (Gy14) v2cgybcmoB244
CmoCh05G003930Melon (DHL92) v3.6.1cmomedB813
CmoCh05G003930Silver-seed gourdcarcmoB0196
CmoCh05G003930Silver-seed gourdcarcmoB1319
CmoCh05G003930Cucumber (Chinese Long) v3cmocucB0925
CmoCh05G003930Watermelon (97103) v2cmowmbB802
CmoCh05G003930Wax gourdcmowgoB0940